data_Z4I # _chem_comp.id Z4I _chem_comp.name "2-(benzylamino)-N'-(difluoroacetyl)pyrimidine-5-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 F2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2023-09-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 321.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z4I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GD4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z4I N12 N1 N 0 1 Y N N 29.247 -5.544 -10.281 1.162 -0.357 -0.043 N12 Z4I 1 Z4I C13 C1 C 0 1 Y N N 30.368 -5.018 -10.782 1.943 0.716 -0.032 C13 Z4I 2 Z4I C15 C2 C 0 1 N N N 32.464 -5.247 -12.182 3.883 -0.802 0.012 C15 Z4I 3 Z4I C17 C3 C 0 1 Y N N 34.277 -4.690 -10.478 6.053 -0.663 1.251 C17 Z4I 4 Z4I C20 C4 C 0 1 Y N N 34.197 -7.266 -9.384 7.481 -0.599 -1.115 C20 Z4I 5 Z4I C21 C5 C 0 1 Y N N 33.362 -6.924 -10.444 6.101 -0.672 -1.142 C21 Z4I 6 Z4I C02 C6 C 0 1 N N N 25.999 -4.696 -5.449 -6.691 -0.572 -0.197 C02 Z4I 7 Z4I C04 C7 C 0 1 N N N 25.869 -3.180 -5.368 -5.195 -0.756 -0.167 C04 Z4I 8 Z4I C07 C8 C 0 1 N N N 28.593 -3.043 -7.526 -2.182 1.224 -0.116 C07 Z4I 9 Z4I C08 C9 C 0 1 Y N N 29.218 -3.785 -8.729 -0.718 1.044 -0.086 C08 Z4I 10 Z4I C09 C10 C 0 1 Y N N 30.385 -3.260 -9.278 0.142 2.149 -0.073 C09 Z4I 11 Z4I C11 C11 C 0 1 Y N N 28.636 -4.951 -9.235 -0.152 -0.238 -0.070 C11 Z4I 12 Z4I C16 C12 C 0 1 Y N N 33.404 -5.622 -10.997 5.387 -0.710 0.041 C16 Z4I 13 Z4I C18 C13 C 0 1 Y N N 35.123 -5.029 -9.415 7.433 -0.578 1.278 C18 Z4I 14 Z4I C19 C14 C 0 1 Y N N 35.080 -6.326 -8.866 8.147 -0.546 0.095 C19 Z4I 15 Z4I F01 F1 F 0 1 N N N 26.695 -5.102 -4.361 -7.317 -1.819 -0.090 F01 Z4I 16 Z4I F03 F2 F 0 1 N N N 24.740 -5.189 -5.355 -7.082 0.240 0.873 F03 Z4I 17 Z4I N05 N2 N 0 1 N N N 26.484 -2.377 -6.372 -4.384 0.320 -0.155 N05 Z4I 18 Z4I N06 N3 N 0 1 N N N 27.158 -3.037 -7.442 -2.994 0.148 -0.128 N06 Z4I 19 Z4I N10 N4 N 0 1 Y N N 30.923 -3.916 -10.293 1.446 1.946 -0.047 N10 Z4I 20 Z4I N14 N5 N 0 1 N N N 31.089 -5.648 -11.926 3.312 0.547 -0.005 N14 Z4I 21 Z4I O22 O1 O 0 1 N N N 29.266 -2.506 -6.683 -2.657 2.344 -0.129 O22 Z4I 22 Z4I O23 O2 O 0 1 N N N 25.267 -2.669 -4.494 -4.722 -1.873 -0.154 O23 Z4I 23 Z4I H1 H1 H 0 1 N N N 32.819 -5.752 -13.092 3.570 -1.340 -0.883 H1 Z4I 24 Z4I H2 H2 H 0 1 N N N 32.496 -4.158 -12.331 3.535 -1.334 0.897 H2 Z4I 25 Z4I H3 H3 H 0 1 N N N 34.309 -3.694 -10.893 5.496 -0.688 2.176 H3 Z4I 26 Z4I H4 H4 H 0 1 N N N 34.159 -8.261 -8.965 8.039 -0.574 -2.040 H4 Z4I 27 Z4I H5 H5 H 0 1 N N N 32.678 -7.657 -10.847 5.581 -0.714 -2.088 H5 Z4I 28 Z4I H6 H6 H 0 1 N N N 26.491 -4.978 -6.392 -6.980 -0.100 -1.136 H6 Z4I 29 Z4I H7 H7 H 0 1 N N N 30.832 -2.356 -8.892 -0.255 3.154 -0.085 H7 Z4I 30 Z4I H8 H8 H 0 1 N N N 27.734 -5.360 -8.806 -0.781 -1.115 -0.079 H8 Z4I 31 Z4I H9 H9 H 0 1 N N N 35.809 -4.296 -9.016 7.953 -0.537 2.224 H9 Z4I 32 Z4I H10 H10 H 0 1 N N N 35.731 -6.589 -8.045 9.225 -0.489 0.116 H10 Z4I 33 Z4I H11 H11 H 0 1 N N N 26.444 -1.379 -6.328 -4.762 1.213 -0.166 H11 Z4I 34 Z4I H12 H12 H 0 1 N N N 26.623 -3.504 -8.146 -2.615 -0.745 -0.117 H12 Z4I 35 Z4I H13 H13 H 0 1 N N N 30.564 -5.448 -12.753 3.896 1.321 0.004 H13 Z4I 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z4I C15 N14 SING N N 1 Z4I C15 C16 SING N N 2 Z4I N14 C13 SING N N 3 Z4I C16 C17 DOUB Y N 4 Z4I C16 C21 SING Y N 5 Z4I C13 N10 DOUB Y N 6 Z4I C13 N12 SING Y N 7 Z4I C17 C18 SING Y N 8 Z4I C21 C20 DOUB Y N 9 Z4I N10 C09 SING Y N 10 Z4I N12 C11 DOUB Y N 11 Z4I C18 C19 DOUB Y N 12 Z4I C20 C19 SING Y N 13 Z4I C09 C08 DOUB Y N 14 Z4I C11 C08 SING Y N 15 Z4I C08 C07 SING N N 16 Z4I C07 N06 SING N N 17 Z4I C07 O22 DOUB N N 18 Z4I N06 N05 SING N N 19 Z4I N05 C04 SING N N 20 Z4I C02 C04 SING N N 21 Z4I C02 F03 SING N N 22 Z4I C02 F01 SING N N 23 Z4I C04 O23 DOUB N N 24 Z4I C15 H1 SING N N 25 Z4I C15 H2 SING N N 26 Z4I C17 H3 SING N N 27 Z4I C20 H4 SING N N 28 Z4I C21 H5 SING N N 29 Z4I C02 H6 SING N N 30 Z4I C09 H7 SING N N 31 Z4I C11 H8 SING N N 32 Z4I C18 H9 SING N N 33 Z4I C19 H10 SING N N 34 Z4I N05 H11 SING N N 35 Z4I N06 H12 SING N N 36 Z4I N14 H13 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z4I SMILES ACDLabs 12.01 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1" Z4I InChI InChI 1.06 "InChI=1S/C14H13F2N5O2/c15-11(16)13(23)21-20-12(22)10-7-18-14(19-8-10)17-6-9-4-2-1-3-5-9/h1-5,7-8,11H,6H2,(H,20,22)(H,21,23)(H,17,18,19)" Z4I InChIKey InChI 1.06 WAERNYVSQGAOPC-UHFFFAOYSA-N Z4I SMILES_CANONICAL CACTVS 3.385 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1" Z4I SMILES CACTVS 3.385 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1" Z4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2ncc(cn2)C(=O)NNC(=O)C(F)F" Z4I SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2ncc(cn2)C(=O)NNC(=O)C(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z4I "SYSTEMATIC NAME" ACDLabs 12.01 "2-(benzylamino)-N'-(difluoroacetyl)pyrimidine-5-carbohydrazide" Z4I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[2,2-bis(fluoranyl)ethanoyl]-2-[(phenylmethyl)amino]pyrimidine-5-carbohydrazide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z4I "Create component" 2023-03-06 RCSB Z4I "Initial release" 2023-10-04 RCSB #