data_Z4U # _chem_comp.id Z4U _chem_comp.name "methyl 4-thio-alpha-D-xylopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z4U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XNK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z4U C1 C1 C 0 1 N N S 20.644 22.956 9.308 -1.268 -0.295 -0.027 C1 Z4U 1 Z4U O1 O1 O 0 1 N N N 21.358 22.241 8.307 -2.414 0.420 0.441 O1 Z4U 2 Z4U C6 C6 C 0 1 N N N 22.012 23.109 7.392 -3.512 0.421 -0.473 C6 Z4U 3 Z4U C2 C2 C 0 1 N N R 21.500 23.102 10.568 -0.259 -0.444 1.114 C2 Z4U 4 Z4U O2 O2 O 0 1 N N N 22.764 23.650 10.222 0.101 0.849 1.606 O2 Z4U 5 Z4U C3 C3 C 0 1 N N R 21.700 21.744 11.249 0.991 -1.158 0.589 C3 Z4U 6 Z4U O3 O3 O 0 1 N N N 22.347 21.940 12.498 0.644 -2.475 0.157 O3 Z4U 7 Z4U C4 C4 C 0 1 N N R 20.366 21.015 11.477 1.561 -0.365 -0.591 C4 Z4U 8 Z4U S4 S4 S 0 1 N N N 20.677 19.288 12.014 2.078 1.279 -0.024 S4 Z4U 9 Z4U C5 C5 C 0 1 N N N 19.544 20.992 10.181 0.481 -0.218 -1.666 C5 Z4U 10 Z4U O5 O5 O 0 1 N N N 19.410 22.323 9.634 -0.665 0.425 -1.104 O5 Z4U 11 Z4U H1 H1 H 0 1 N N N 20.433 23.969 8.935 -1.573 -1.282 -0.375 H1 Z4U 12 Z4U H21 H21 H 0 1 N N N 22.549 22.512 6.640 -3.828 -0.605 -0.662 H21 Z4U 13 Z4U H22 H22 H 0 1 N N N 21.266 23.744 6.892 -4.341 0.983 -0.045 H22 Z4U 14 Z4U H23 H23 H 0 1 N N N 22.728 23.743 7.936 -3.204 0.885 -1.411 H23 Z4U 15 Z4U H2 H2 H 0 1 N N N 20.979 23.771 11.269 -0.702 -1.029 1.919 H2 Z4U 16 Z4U HO2 HO2 H 0 1 N Y N 23.295 23.741 11.004 -0.644 1.360 1.950 HO2 Z4U 17 Z4U H3 H3 H 0 1 N N N 22.328 21.119 10.597 1.736 -1.219 1.382 H3 Z4U 18 Z4U HO3 HO3 H 0 1 N Y N 22.474 21.101 12.925 1.389 -2.985 -0.188 HO3 Z4U 19 Z4U H4 H4 H 0 1 N N N 19.797 21.503 12.282 2.419 -0.894 -1.005 H4 Z4U 20 Z4U H51 H51 H 0 1 N N N 20.049 20.349 9.445 0.867 0.382 -2.490 H51 Z4U 21 Z4U H52 H52 H 0 1 N N N 18.544 20.588 10.396 0.199 -1.205 -2.035 H52 Z4U 22 Z4U HS4 HS4 H 0 1 N Y N 19.470 18.828 12.158 2.549 1.852 -1.146 HS4 Z4U 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z4U C1 O1 SING N N 1 Z4U C1 C2 SING N N 2 Z4U C1 O5 SING N N 3 Z4U C1 H1 SING N N 4 Z4U O1 C6 SING N N 5 Z4U C6 H21 SING N N 6 Z4U C6 H22 SING N N 7 Z4U C6 H23 SING N N 8 Z4U C2 O2 SING N N 9 Z4U C2 C3 SING N N 10 Z4U C2 H2 SING N N 11 Z4U O2 HO2 SING N N 12 Z4U C3 O3 SING N N 13 Z4U C3 C4 SING N N 14 Z4U C3 H3 SING N N 15 Z4U O3 HO3 SING N N 16 Z4U C4 S4 SING N N 17 Z4U C4 C5 SING N N 18 Z4U C4 H4 SING N N 19 Z4U C5 O5 SING N N 20 Z4U C5 H51 SING N N 21 Z4U C5 H52 SING N N 22 Z4U S4 HS4 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z4U SMILES ACDLabs 12.01 "OC1C(O)C(S)COC1OC" Z4U InChI InChI 1.03 "InChI=1S/C6H12O4S/c1-9-6-5(8)4(7)3(11)2-10-6/h3-8,11H,2H2,1H3/t3-,4+,5-,6+/m1/s1" Z4U InChIKey InChI 1.03 YRXSBQDFUVBYAI-MOJAZDJTSA-N Z4U SMILES_CANONICAL CACTVS 3.370 "CO[C@H]1OC[C@@H](S)[C@H](O)[C@H]1O" Z4U SMILES CACTVS 3.370 "CO[CH]1OC[CH](S)[CH](O)[CH]1O" Z4U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO[C@@H]1[C@@H]([C@H]([C@@H](CO1)S)O)O" Z4U SMILES "OpenEye OEToolkits" 1.7.6 "COC1C(C(C(CO1)S)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z4U "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 4-thio-alpha-D-xylopyranoside" Z4U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4R,5R)-2-methoxy-5-sulfanyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z4U "CARBOHYDRATE ISOMER" D PDB ? Z4U "CARBOHYDRATE RING" pyranose PDB ? Z4U "CARBOHYDRATE ANOMER" alpha PDB ? Z4U "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z4U "Create component" 2012-12-18 RCSB Z4U "Modify atom id" 2020-05-09 RCSB Z4U "Modify component atom id" 2020-07-17 RCSB Z4U "Initial release" 2020-07-29 RCSB ##