data_Z4V # _chem_comp.id Z4V _chem_comp.name 4-thio-beta-L-ribopyranose _chem_comp.type "L-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 166.195 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z4V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XNK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z4V C1 C1 C 0 1 N N S 2.675 -0.305 -3.603 1.607 0.529 0.294 C1 Z4V 1 Z4V C2 C2 C 0 1 N N S 3.430 0.750 -4.428 1.155 -0.653 -0.568 C2 Z4V 2 Z4V C3 C3 C 0 1 N N R 3.804 0.190 -5.809 -0.320 -0.951 -0.279 C3 Z4V 3 Z4V C4 C4 C 0 1 N N S 2.540 -0.356 -6.485 -1.145 0.312 -0.544 C4 Z4V 4 Z4V C5 C5 C 0 1 N N N 1.853 -1.374 -5.576 -0.604 1.456 0.317 C5 Z4V 5 Z4V O1 O1 O 0 1 N Y N 2.241 0.271 -2.288 2.966 0.848 -0.010 O1 Z4V 6 Z4V O2 O2 O 0 1 N N N 4.625 1.166 -3.776 1.944 -1.802 -0.255 O2 Z4V 7 Z4V O3 O3 O 0 1 N N N 4.764 -0.854 -5.623 -0.470 -1.342 1.087 O3 Z4V 8 Z4V S4 S4 S 0 1 N N N 2.905 -1.104 -8.106 -2.881 0.001 -0.119 S4 Z4V 9 Z4V O5 O5 O 0 1 N N N 1.527 -0.770 -4.321 0.779 1.660 0.021 O5 Z4V 10 Z4V H1 H1 H 0 1 N N N 3.358 -1.146 -3.412 1.523 0.263 1.348 H1 Z4V 11 Z4V HO1 HO1 H 0 1 N N N 1.776 -0.391 -1.790 3.320 1.589 0.501 HO1 Z4V 12 Z4V H2 H2 H 0 1 N N N 2.765 1.614 -4.574 1.277 -0.403 -1.622 H2 Z4V 13 Z4V HO2 HO2 H 0 1 N Y N 5.067 1.816 -4.309 2.891 -1.683 -0.409 HO2 Z4V 14 Z4V H3 H3 H 0 1 N N N 4.224 0.999 -6.425 -0.663 -1.756 -0.929 H3 Z4V 15 Z4V HO3 HO3 H 0 1 N Y N 5.009 -1.214 -6.467 -1.381 -1.546 1.339 HO3 Z4V 16 Z4V H4 H4 H 0 1 N N N 1.849 0.476 -6.684 -1.070 0.582 -1.598 H4 Z4V 17 Z4V HS4 HS4 H 0 1 N Y N 1.727 -1.493 -8.496 -3.476 1.175 -0.398 HS4 Z4V 18 Z4V H51 H51 H 0 1 N N N 2.529 -2.225 -5.406 -0.717 1.202 1.371 H51 Z4V 19 Z4V H52 H52 H 0 1 N N N 0.931 -1.730 -6.059 -1.161 2.368 0.101 H52 Z4V 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z4V C1 H1 SING N N 1 Z4V C1 O1 SING N N 2 Z4V O1 HO1 SING N N 3 Z4V C1 O5 SING N N 4 Z4V C1 C2 SING N N 5 Z4V C2 H2 SING N N 6 Z4V C2 O2 SING N N 7 Z4V O2 HO2 SING N N 8 Z4V C2 C3 SING N N 9 Z4V C3 H3 SING N N 10 Z4V C3 O3 SING N N 11 Z4V O3 HO3 SING N N 12 Z4V C3 C4 SING N N 13 Z4V C4 H4 SING N N 14 Z4V C4 S4 SING N N 15 Z4V S4 HS4 SING N N 16 Z4V C4 C5 SING N N 17 Z4V C5 O5 SING N N 18 Z4V C5 H51 SING N N 19 Z4V C5 H52 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z4V SMILES ACDLabs 12.01 "OC1C(S)COC(O)C1O" Z4V InChI InChI 1.03 "InChI=1S/C5H10O4S/c6-3-2(10)1-9-5(8)4(3)7/h2-8,10H,1H2/t2-,3-,4-,5-/m0/s1" Z4V InChIKey InChI 1.03 MFDZOCXKSSGEBR-FCAWWPLPSA-N Z4V SMILES_CANONICAL CACTVS 3.370 "O[C@H]1OC[C@H](S)[C@H](O)[C@@H]1O" Z4V SMILES CACTVS 3.370 "O[CH]1OC[CH](S)[CH](O)[CH]1O" Z4V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@@H]([C@@H]([C@H](O1)O)O)O)S" Z4V SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)O)O)O)S" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z4V "SYSTEMATIC NAME" ACDLabs 12.01 4-thio-beta-L-ribopyranose Z4V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S,4R,5S)-5-sulfanyloxane-2,3,4-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z4V "CARBOHYDRATE ISOMER" L PDB ? Z4V "CARBOHYDRATE RING" pyranose PDB ? Z4V "CARBOHYDRATE ANOMER" beta PDB ? Z4V "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z4V "Create component" 2012-12-18 RCSB Z4V "Other modification" 2013-01-09 RCSB Z4V "Modify atom id" 2013-01-11 RCSB Z4V "Modify atom id" 2020-05-09 RCSB Z4V "Modify component atom id" 2020-07-17 RCSB Z4V "Initial release" 2020-07-29 RCSB ##