data_Z4W # _chem_comp.id Z4W _chem_comp.name beta-D-lyxopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-lyxose; D-lyxose; lyxose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z4W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XNK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 Z4W beta-D-lyxose PDB ? 2 Z4W D-lyxose PDB ? 3 Z4W lyxose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z4W C1 C1 C 0 1 N N R 3.689 0.348 -8.888 1.473 0.298 -0.538 C1 Z4W 1 Z4W C2 C2 C 0 1 N N S 4.130 0.035 -10.324 0.632 -0.957 -0.288 C2 Z4W 2 Z4W C3 C3 C 0 1 N N S 4.796 1.274 -10.933 -0.841 -0.639 -0.564 C3 Z4W 3 Z4W C4 C4 C 0 1 N N R 3.887 2.499 -10.802 -1.272 0.535 0.320 C4 Z4W 4 Z4W C5 C5 C 0 1 N N N 3.411 2.660 -9.362 -0.358 1.732 0.047 C5 Z4W 5 Z4W O1 O1 O 0 1 N Y N 3.045 -0.845 -8.246 2.841 0.024 -0.228 O1 Z4W 6 Z4W O2 O2 O 0 1 N N N 2.980 -0.306 -11.103 0.785 -1.372 1.071 O2 Z4W 7 Z4W O3 O3 O 0 1 N N N 5.088 1.025 -12.304 -1.642 -1.783 -0.263 O3 Z4W 8 Z4W O4 O4 O 0 1 N N N 4.588 3.671 -11.205 -2.624 0.888 0.020 O4 Z4W 9 Z4W O5 O5 O 0 1 N N N 2.794 1.467 -8.881 0.999 1.359 0.294 O5 Z4W 10 Z4W H1 H1 H 0 1 N N N 4.589 0.605 -8.310 1.388 0.590 -1.584 H1 Z4W 11 Z4W HO1 H1O H ? 1 N Y N 3.650 -1.577 -8.259 3.432 0.777 -0.363 HO1 Z4W 12 Z4W H2 H2 H 0 1 N N N 4.851 -0.795 -10.310 0.963 -1.755 -0.953 H2 Z4W 13 Z4W HO2 H2O H 0 1 N Y N 3.247 -0.501 -11.994 1.695 -1.586 1.317 HO2 Z4W 14 Z4W H3 H3 H 0 1 N N N 5.728 1.473 -10.383 -0.967 -0.371 -1.613 H3 Z4W 15 Z4W HO3 H3O H 0 1 N Y N 5.652 0.264 -12.375 -2.588 -1.650 -0.409 HO3 Z4W 16 Z4W H4 H4 H 0 1 N N N 3.008 2.350 -11.446 -1.194 0.249 1.369 H4 Z4W 17 Z4W HO4 H4O H 0 1 N Y N 4.884 3.571 -12.102 -2.962 1.629 0.540 HO4 Z4W 18 Z4W H51 H51 H 0 1 N N N 2.683 3.483 -9.316 -0.633 2.557 0.705 H51 Z4W 19 Z4W H52 H52 H 0 1 N N N 4.275 2.898 -8.724 -0.467 2.043 -0.992 H52 Z4W 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z4W C1 H1 SING N N 1 Z4W C1 O1 SING N N 2 Z4W O1 HO1 SING N N 3 Z4W C1 O5 SING N N 4 Z4W C1 C2 SING N N 5 Z4W C2 H2 SING N N 6 Z4W C2 O2 SING N N 7 Z4W O2 HO2 SING N N 8 Z4W C2 C3 SING N N 9 Z4W C3 H3 SING N N 10 Z4W C3 O3 SING N N 11 Z4W O3 HO3 SING N N 12 Z4W C3 C4 SING N N 13 Z4W C4 H4 SING N N 14 Z4W C4 O4 SING N N 15 Z4W O4 HO4 SING N N 16 Z4W C4 C5 SING N N 17 Z4W C5 O5 SING N N 18 Z4W C5 H51 SING N N 19 Z4W C5 H52 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z4W SMILES ACDLabs 12.01 "OC1C(O)COC(O)C1O" Z4W InChI InChI 1.03 "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4+,5-/m1/s1" Z4W InChIKey InChI 1.03 SRBFZHDQGSBBOR-MGCNEYSASA-N Z4W SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1CO[C@@H](O)[C@@H](O)[C@H]1O" Z4W SMILES CACTVS 3.370 "O[CH]1CO[CH](O)[CH](O)[CH]1O" Z4W SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O" Z4W SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z4W "SYSTEMATIC NAME" ACDLabs 12.01 beta-D-lyxopyranose Z4W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4S,5R)-oxane-2,3,4,5-tetrol" Z4W "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DLyxpb Z4W "COMMON NAME" GMML 1.0 b-D-lyxopyranose Z4W "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Lyxp Z4W "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Lyx # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z4W "CARBOHYDRATE ISOMER" D PDB ? Z4W "CARBOHYDRATE RING" pyranose PDB ? Z4W "CARBOHYDRATE ANOMER" beta PDB ? Z4W "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z4W "Create component" 2012-12-18 RCSB Z4W "Other modification" 2013-01-09 RCSB Z4W "Modify atom id" 2013-01-11 RCSB Z4W "Other modification" 2019-08-12 RCSB Z4W "Other modification" 2019-12-19 RCSB Z4W "Other modification" 2020-06-03 RCSB Z4W "Other modification" 2020-06-10 RCSB Z4W "Other modification" 2020-07-03 RCSB Z4W "Modify atom id" 2020-07-17 RCSB Z4W "Modify component atom id" 2020-07-17 RCSB Z4W "Initial release" 2020-07-29 RCSB ##