data_Z5J # _chem_comp.id Z5J _chem_comp.name beta-L-Olivopyranose _chem_comp.type "L-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;beta-L-Olivose; 2,6-dideoxy-beta-L-arabino-hexopyranose; 2,6-dideoxy-beta-L-glucopyranose; 2,6-dideoxy-beta-L-mannopyranose; 2-deoxy-beta-L-quinovopyranose; 2-deoxy-beta-L-rhamnoopyranose; L-Olivose; Olivose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z5J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Q0Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 Z5J beta-L-Olivose PDB ? 2 Z5J "2,6-dideoxy-beta-L-arabino-hexopyranose" PDB ? 3 Z5J "2,6-dideoxy-beta-L-glucopyranose" PDB ? 4 Z5J "2,6-dideoxy-beta-L-mannopyranose" PDB ? 5 Z5J 2-deoxy-beta-L-quinovopyranose PDB ? 6 Z5J 2-deoxy-beta-L-rhamnoopyranose PDB ? 7 Z5J L-Olivose PDB ? 8 Z5J Olivose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z5J O4 O1 O 0 1 N N N 19.478 8.593 14.223 2.478 -0.322 0.242 O4 Z5J 1 Z5J C4 C1 C 0 1 N N R 18.969 9.089 12.953 1.142 -0.140 -0.229 C4 Z5J 2 Z5J C5 C2 C 0 1 N N S 18.075 8.023 12.243 0.257 -1.277 0.289 C5 Z5J 3 Z5J C6 C3 C 0 1 N N N 18.854 6.835 11.662 0.760 -2.609 -0.268 C6 Z5J 4 Z5J O5 O2 O 0 1 N N N 17.324 8.803 11.298 -1.091 -1.061 -0.135 O5 Z5J 5 Z5J C3 C4 C 0 1 N N S 18.179 10.383 13.322 0.596 1.196 0.284 C3 Z5J 6 Z5J O3 O3 O 0 1 N N N 19.019 11.528 13.529 1.372 2.268 -0.254 O3 Z5J 7 Z5J C2 C5 C 0 1 N N N 17.232 10.849 12.236 -0.862 1.345 -0.162 C2 Z5J 8 Z5J C1 C6 C 0 1 N N S 16.589 9.648 11.583 -1.670 0.151 0.354 C1 Z5J 9 Z5J O1 O4 O 0 1 N Y N 15.210 9.594 11.186 -3.019 0.254 -0.106 O1 Z5J 10 Z5J HO1 H4O H 0 1 N Y N 14.758 10.366 11.505 -3.589 -0.472 0.183 HO1 Z5J 11 Z5J H4 H11 H 0 1 N N N 19.801 9.357 12.286 1.136 -0.142 -1.319 H4 Z5J 12 Z5J H5 H21 H 0 1 N N N 17.383 7.625 13.000 0.296 -1.300 1.378 H5 Z5J 13 Z5J H61 H31 H 0 1 N N N 18.153 6.136 11.183 1.788 -2.773 0.055 H61 Z5J 14 Z5J H62 H32 H 0 1 N N N 19.576 7.199 10.916 0.130 -3.419 0.101 H62 Z5J 15 Z5J H63 H33 H 0 1 N N N 19.392 6.318 12.471 0.721 -2.586 -1.357 H63 Z5J 16 Z5J H3 H41 H 0 1 N N N 17.597 10.180 14.233 0.649 1.218 1.373 H3 Z5J 17 Z5J HO3 H3O H 0 1 N Y N 18.482 12.280 13.749 1.081 3.146 0.030 HO3 Z5J 18 Z5J H21 H51 H 0 1 N N N 16.453 11.488 12.677 -1.276 2.267 0.246 H21 Z5J 19 Z5J H22 H52 H 0 1 N N N 17.792 11.421 11.482 -0.909 1.373 -1.250 H22 Z5J 20 Z5J H1 H61 H 0 1 N N N 16.366 9.191 12.558 -1.656 0.146 1.444 H1 Z5J 21 Z5J HO4 H1O H 0 1 N Y N 20.017 9.261 14.631 3.095 0.363 -0.049 HO4 Z5J 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z5J O4 C4 SING N N 1 Z5J C4 C5 SING N N 2 Z5J C4 C3 SING N N 3 Z5J C4 H4 SING N N 4 Z5J C5 C6 SING N N 5 Z5J C5 O5 SING N N 6 Z5J C5 H5 SING N N 7 Z5J C6 H61 SING N N 8 Z5J C6 H62 SING N N 9 Z5J C6 H63 SING N N 10 Z5J O5 C1 SING N N 11 Z5J C3 O3 SING N N 12 Z5J C3 C2 SING N N 13 Z5J C3 H3 SING N N 14 Z5J O3 HO3 SING N N 15 Z5J C2 C1 SING N N 16 Z5J C2 H21 SING N N 17 Z5J C2 H22 SING N N 18 Z5J C1 O1 SING N N 19 Z5J C1 H1 SING N N 20 Z5J HO1 O1 SING N N 21 Z5J O4 HO4 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z5J SMILES ACDLabs 12.01 "OC1C(OC(O)CC1O)C" Z5J InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6-/m0/s1" Z5J InChIKey InChI 1.03 FDWRIIDFYSUTDP-BXKVDMCESA-N Z5J SMILES_CANONICAL CACTVS 3.370 "C[C@@H]1O[C@H](O)C[C@H](O)[C@H]1O" Z5J SMILES CACTVS 3.370 "C[CH]1O[CH](O)C[CH](O)[CH]1O" Z5J SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@@H]([C@H](CC(O1)O)O)O" Z5J SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z5J "SYSTEMATIC NAME" ACDLabs 12.01 "2,6-dideoxy-beta-L-arabino-hexopyranose" Z5J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S,5R,6S)-6-methyloxane-2,4,5-triol" Z5J "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LOlib Z5J "COMMON NAME" GMML 1.0 b-L-Olivopyranose Z5J "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Oli Z5J "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "b-L-2,6-deoxy-Glcp" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z5J "CARBOHYDRATE ISOMER" L PDB ? Z5J "CARBOHYDRATE RING" pyranose PDB ? Z5J "CARBOHYDRATE ANOMER" beta PDB ? Z5J "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z5J "Create component" 2012-12-18 RCSB Z5J "Other modification" 2019-08-12 RCSB Z5J "Other modification" 2019-12-19 RCSB Z5J "Other modification" 2020-06-03 RCSB Z5J "Other modification" 2020-06-10 RCSB Z5J "Other modification" 2020-07-03 RCSB Z5J "Modify atom id" 2020-07-17 RCSB Z5J "Modify component atom id" 2020-07-17 RCSB Z5J "Initial release" 2020-07-29 RCSB ##