data_Z5L # _chem_comp.id Z5L _chem_comp.name "methyl 2-thio-alpha-D-mannopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z5L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1X9D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z5L S2 S2 S 0 1 N N N 2.759 -5.803 -0.496 2.096 0.362 1.527 S2 Z5L 1 Z5L C2 C2 C 0 1 N N S 2.918 -7.077 0.784 1.396 0.831 -0.080 C2 Z5L 2 Z5L C1 C1 C 0 1 N N S 3.993 -8.069 0.411 0.040 1.509 0.131 C1 Z5L 3 Z5L O1 O1 O 0 1 N N N 4.209 -8.893 1.557 -0.486 1.926 -1.131 O1 Z5L 4 Z5L C1M C1M C 0 1 N N N 5.377 -9.728 1.466 -1.637 2.767 -1.032 C1M Z5L 5 Z5L O5 O5 O 0 1 N N N 3.592 -8.831 -0.720 -0.863 0.586 0.742 O5 Z5L 6 Z5L C3 C3 C 0 1 N N S 1.611 -7.844 1.050 1.204 -0.421 -0.940 C3 Z5L 7 Z5L O3 O3 O 0 1 N N N 0.589 -6.898 1.339 2.453 -1.101 -1.081 O3 Z5L 8 Z5L C4 C4 C 0 1 N N S 1.225 -8.756 -0.126 0.192 -1.346 -0.257 C4 Z5L 9 Z5L O4 O4 O 0 1 N N N 0.158 -9.646 0.278 -0.050 -2.485 -1.085 O4 Z5L 10 Z5L C5 C5 C 0 1 N N R 2.393 -9.621 -0.554 -1.118 -0.584 -0.039 C5 Z5L 11 Z5L C6 C6 C 0 1 N N N 2.071 -10.262 -1.885 -2.114 -1.482 0.697 C6 Z5L 12 Z5L O6 O6 O 0 1 N N N 3.033 -11.285 -2.161 -3.373 -0.813 0.799 O6 Z5L 13 Z5L H2 H2 H 0 1 N N N 3.214 -6.548 1.702 2.074 1.520 -0.585 H2 Z5L 14 Z5L H1 H1 H 0 1 N N N 4.914 -7.514 0.177 0.164 2.378 0.777 H1 Z5L 15 Z5L H31 H31 H 0 1 N N N 5.472 -10.328 2.383 -2.432 2.234 -0.512 H31 Z5L 16 Z5L H32 H32 H 0 1 N N N 5.282 -10.397 0.598 -1.381 3.669 -0.477 H32 Z5L 17 Z5L H33 H33 H 0 1 N N N 6.270 -9.097 1.347 -1.974 3.040 -2.032 H33 Z5L 18 Z5L H3 H3 H 0 1 N N N 1.772 -8.483 1.931 0.832 -0.135 -1.924 H3 Z5L 19 Z5L HO3 HO3 H 0 1 N Y N -0.227 -7.354 1.506 3.144 -0.571 -1.501 HO3 Z5L 20 Z5L H4 H4 H 0 1 N N N 0.903 -8.133 -0.973 0.588 -1.673 0.705 H4 Z5L 21 Z5L HO4 HO4 H 0 1 N Y N -0.079 -10.208 -0.450 0.739 -3.013 -1.269 HO4 Z5L 22 Z5L H5 H5 H 0 1 N N N 2.557 -10.407 0.198 -1.534 -0.294 -1.004 H5 Z5L 23 Z5L H61 H61 H 0 1 N N N 1.065 -10.704 -1.846 -2.241 -2.413 0.146 H61 Z5L 24 Z5L H62 H62 H 0 1 N N N 2.106 -9.500 -2.678 -1.737 -1.700 1.697 H62 Z5L 25 Z5L HO6 HO6 H 0 1 N Y N 2.834 -11.690 -2.997 -4.055 -1.325 1.255 HO6 Z5L 26 Z5L HS2 HS2 H 0 1 N Y N 1.810 -5.055 -0.016 2.201 1.541 2.166 HS2 Z5L 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z5L S2 C2 SING N N 1 Z5L C2 C1 SING N N 2 Z5L C2 C3 SING N N 3 Z5L C2 H2 SING N N 4 Z5L C1 O1 SING N N 5 Z5L C1 O5 SING N N 6 Z5L C1 H1 SING N N 7 Z5L O1 C1M SING N N 8 Z5L C1M H31 SING N N 9 Z5L C1M H32 SING N N 10 Z5L C1M H33 SING N N 11 Z5L O5 C5 SING N N 12 Z5L C3 O3 SING N N 13 Z5L C3 C4 SING N N 14 Z5L C3 H3 SING N N 15 Z5L O3 HO3 SING N N 16 Z5L C4 O4 SING N N 17 Z5L C4 C5 SING N N 18 Z5L C4 H4 SING N N 19 Z5L O4 HO4 SING N N 20 Z5L C5 C6 SING N N 21 Z5L C5 H5 SING N N 22 Z5L C6 O6 SING N N 23 Z5L C6 H61 SING N N 24 Z5L C6 H62 SING N N 25 Z5L O6 HO6 SING N N 26 Z5L S2 HS2 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z5L SMILES ACDLabs 12.01 "SC1C(O)C(O)C(OC1OC)CO" Z5L InChI InChI 1.03 "InChI=1S/C7H14O5S/c1-11-7-6(13)5(10)4(9)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5+,6+,7+/m1/s1" Z5L InChIKey InChI 1.03 VHSKYAXEXJLKPC-VEIUFWFVSA-N Z5L SMILES_CANONICAL CACTVS 3.370 "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1S" Z5L SMILES CACTVS 3.370 "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1S" Z5L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)S" Z5L SMILES "OpenEye OEToolkits" 1.7.6 "COC1C(C(C(C(O1)CO)O)O)S" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z5L "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2-thio-alpha-D-mannopyranoside" Z5L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4S,5S,6S)-2-(hydroxymethyl)-6-methoxy-5-sulfanyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z5L "CARBOHYDRATE ISOMER" D PDB ? Z5L "CARBOHYDRATE RING" pyranose PDB ? Z5L "CARBOHYDRATE ANOMER" alpha PDB ? Z5L "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z5L "Create component" 2012-12-18 RCSB Z5L "Modify atom id" 2020-05-09 RCSB Z5L "Modify component atom id" 2020-07-17 RCSB Z5L "Initial release" 2020-07-29 RCSB ##