data_Z61 # _chem_comp.id Z61 _chem_comp.name 2-deoxy-alpha-D-arabino-hexopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-deoxy-alpha-D-glucopyranose; 2-deoxy-alpha-D-mannopyranose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z61 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z61 O4 O4 O 0 1 N N N -0.574 31.646 30.846 0.233 2.255 0.588 O4 Z61 1 Z61 C1 C1 C 0 1 N N S -3.456 29.583 33.185 0.386 -1.822 -0.304 C1 Z61 2 Z61 C2 C2 C 0 1 N N N -3.338 31.107 33.344 1.645 -1.009 -0.618 C2 Z61 3 Z61 C3 C3 C 0 1 N N R -2.621 31.781 32.189 1.602 0.306 0.167 C3 Z61 4 Z61 C4 C4 C 0 1 N N S -1.307 31.065 31.954 0.318 1.061 -0.192 C4 Z61 5 Z61 C5 C5 C 0 1 N N R -1.588 29.625 31.677 -0.889 0.168 0.105 C5 Z61 6 Z61 C6 C6 C 0 1 N N N -0.275 28.931 31.531 -2.173 0.892 -0.307 C6 Z61 7 Z61 O1 O1 O 0 1 N Y N -4.403 29.184 32.238 0.363 -2.148 1.087 O1 Z61 8 Z61 O3 O3 O 0 1 N N N -2.312 33.097 32.577 2.737 1.104 -0.176 O3 Z61 9 Z61 O5 O5 O 0 1 N N N -2.207 28.993 32.823 -0.772 -1.051 -0.632 O5 Z61 10 Z61 O6 O6 O 0 1 N N N -0.388 27.559 31.399 -3.305 0.109 0.076 O6 Z61 11 Z61 H1 H1 H 0 1 N N N -3.752 29.183 34.166 0.390 -2.740 -0.892 H1 Z61 12 Z61 H21 H21 H 0 1 N N N -4.351 31.529 33.419 2.527 -1.578 -0.327 H21 Z61 13 Z61 H22 H22 H 0 1 N N N -2.783 31.319 34.270 1.683 -0.795 -1.686 H22 Z61 14 Z61 H3 H3 H 0 1 N N N -3.242 31.752 31.282 1.613 0.093 1.236 H3 Z61 15 Z61 H4 H4 H 0 1 N N N -0.702 31.138 32.870 0.331 1.318 -1.251 H4 Z61 16 Z61 H5 H5 H 0 1 N N N -2.199 29.510 30.769 -0.923 -0.054 1.171 H5 Z61 17 Z61 H61 H61 H 0 1 N N N 0.230 29.326 30.637 -2.217 1.862 0.188 H61 Z61 18 Z61 H62 H62 H 0 1 N N N 0.334 29.146 32.422 -2.178 1.035 -1.388 H62 Z61 19 Z61 HO1 HO1 H 0 1 N Y N -4.424 28.235 32.191 -0.409 -2.664 1.357 HO1 Z61 20 Z61 HO3 HO3 H 0 1 N Y N -1.861 33.539 31.867 3.586 0.684 0.018 HO3 Z61 21 Z61 HO6 HO6 H 0 1 N Y N 0.477 27.177 31.310 -4.155 0.508 -0.154 HO6 Z61 22 Z61 HO4 HO4 H 0 1 N Y N 0.243 31.176 30.725 0.970 2.866 0.454 HO4 Z61 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z61 O4 C4 SING N N 1 Z61 C1 C2 SING N N 2 Z61 C1 O1 SING N N 3 Z61 C1 O5 SING N N 4 Z61 C1 H1 SING N N 5 Z61 C2 C3 SING N N 6 Z61 C2 H21 SING N N 7 Z61 C2 H22 SING N N 8 Z61 C3 C4 SING N N 9 Z61 C3 O3 SING N N 10 Z61 C3 H3 SING N N 11 Z61 C4 C5 SING N N 12 Z61 C4 H4 SING N N 13 Z61 C5 C6 SING N N 14 Z61 C5 O5 SING N N 15 Z61 C5 H5 SING N N 16 Z61 C6 O6 SING N N 17 Z61 C6 H61 SING N N 18 Z61 C6 H62 SING N N 19 Z61 O1 HO1 SING N N 20 Z61 O3 HO3 SING N N 21 Z61 O6 HO6 SING N N 22 Z61 O4 HO4 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z61 SMILES ACDLabs 12.01 "OC1C(OC(O)CC1O)CO" Z61 InChI InChI 1.03 "InChI=1S/C6H12O5/c7-2-4-6(10)3(8)1-5(9)11-4/h3-10H,1-2H2/t3-,4-,5+,6+/m1/s1" Z61 InChIKey InChI 1.03 PMMURAAUARKVCB-ZXXMMSQZSA-N Z61 SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](O)C[C@@H](O)[C@@H]1O" Z61 SMILES CACTVS 3.370 "OC[CH]1O[CH](O)C[CH](O)[CH]1O" Z61 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O" Z61 SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(OC1O)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z61 "SYSTEMATIC NAME" ACDLabs 12.01 2-deoxy-alpha-D-arabino-hexopyranose Z61 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,4R,5S,6R)-6-(hydroxymethyl)oxane-2,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z61 "CARBOHYDRATE ISOMER" D PDB ? Z61 "CARBOHYDRATE RING" pyranose PDB ? Z61 "CARBOHYDRATE ANOMER" alpha PDB ? Z61 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z61 "Create component" 2012-12-18 RCSB Z61 "Modify atom id" 2020-05-09 RCSB Z61 "Modify synonyms" 2020-06-11 RCSB Z61 "Modify component atom id" 2020-07-17 RCSB Z61 "Initial release" 2020-07-29 RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 Z61 2-deoxy-alpha-D-glucopyranose PDB ? 2 Z61 2-deoxy-alpha-D-mannopyranose PDB ? ##