data_Z6F # _chem_comp.id Z6F _chem_comp.name "(3S,5R)-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 Cl F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-07 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.886 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z6F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z6F C01 C1 C 0 1 N N N N N N -1.710 13.316 -7.777 -7.896 1.937 1.358 C01 Z6F 1 Z6F C03 C2 C 0 1 N N N N N N 0.082 13.662 -8.991 -5.871 0.610 1.361 C03 Z6F 2 Z6F C04 C3 C 0 1 N N N N N N 0.596 14.072 -10.374 -4.891 -0.143 0.454 C04 Z6F 3 Z6F C06 C4 C 0 1 N N N N N N 0.039 16.440 -11.150 -2.963 0.896 -0.649 C06 Z6F 4 Z6F C08 C5 C 0 1 N N N N N N -2.270 17.393 -12.197 -0.742 0.257 0.160 C08 Z6F 5 Z6F C09 C6 C 0 1 N N S N N N -2.094 17.787 -13.688 0.105 -0.842 -0.489 C09 Z6F 6 Z6F O11 O1 O 0 1 N N N N N N -4.365 17.317 -14.364 2.160 -1.497 0.470 O11 Z6F 7 Z6F C10 C7 C 0 1 N N N N N N -3.235 17.449 -14.695 1.555 -0.636 -0.133 C10 Z6F 8 Z6F C13 C8 C 0 1 Y N N N N N -3.556 17.055 -17.253 3.554 0.649 -0.264 C13 Z6F 9 Z6F C14 C9 C 0 1 Y N N N N N -4.943 17.125 -17.263 4.369 -0.474 -0.207 C14 Z6F 10 Z6F C15 C10 C 0 1 Y N N N N N -5.620 16.855 -18.449 5.727 -0.329 0.011 C15 Z6F 11 Z6F C17 C11 C 0 1 Y N N N N N -4.917 16.527 -19.596 6.273 0.934 0.173 C17 Z6F 12 Z6F C19 C12 C 0 1 Y N N N N N -3.531 16.462 -19.588 5.461 2.053 0.116 C19 Z6F 13 Z6F C20 C13 C 0 1 Y N N N N N -2.853 16.731 -18.412 4.105 1.913 -0.108 C20 Z6F 14 Z6F C21 C14 C 0 1 N N N N N N -1.839 19.229 -13.784 -0.358 -2.207 0.026 C21 Z6F 15 Z6F C22 C15 C 0 1 N N R N N N -0.466 19.423 -13.274 -1.821 -2.432 -0.364 C22 Z6F 16 Z6F C23 C16 C 0 1 N N N N N N -0.136 20.931 -13.248 -2.273 -3.810 0.122 C23 Z6F 17 Z6F C25 C17 C 0 1 N N N N N N -0.330 18.870 -11.845 -2.690 -1.350 0.285 C25 Z6F 18 Z6F C27 C18 C 0 1 N N N N N N -1.513 14.351 -11.163 -5.203 1.683 -1.261 C27 Z6F 19 Z6F C28 C19 C 0 1 N N N N N N -2.110 14.128 -9.771 -6.170 2.364 -0.286 C28 Z6F 20 Z6F F16 F1 F 0 1 N N N N N N -6.985 16.900 -18.521 6.522 -1.421 0.068 F16 Z6F 21 Z6F N02 N1 N 0 1 N N N N N N -1.283 13.335 -8.962 -6.837 1.342 0.531 N02 Z6F 22 Z6F N05 N2 N 0 1 N N N N N N -0.292 15.017 -10.943 -4.299 0.816 -0.491 N05 Z6F 23 Z6F N07 N3 N 0 1 N N N N N N -0.852 17.477 -11.689 -2.161 -0.031 -0.088 N07 Z6F 24 Z6F N12 N4 N 0 1 N N N N N N -2.770 17.341 -16.066 2.179 0.506 -0.485 N12 Z6F 25 Z6F O24 O2 O 0 1 N N N N N N 0.213 21.250 -11.935 -3.600 -4.067 -0.342 O24 Z6F 26 Z6F O26 O3 O 0 1 N N N N N N 1.130 16.805 -10.856 -2.480 1.806 -1.296 O26 Z6F 27 Z6F CL1 CL1 CL 0 0 N N N N N N -5.835 16.187 -21.086 7.977 1.113 0.454 CL1 Z6F 28 Z6F H1 H1 H 0 1 N N N N N N -1.050 12.690 -7.159 -7.452 2.631 2.072 H1 Z6F 29 Z6F H2 H2 H 0 1 N N N N N N -1.725 14.340 -7.376 -8.597 2.473 0.719 H2 Z6F 30 Z6F H3 H3 H 0 1 N N N N N N -2.729 12.901 -7.761 -8.423 1.149 1.895 H3 Z6F 31 Z6F H4 H4 H 0 1 N N N N N N 0.655 12.785 -8.655 -6.400 -0.102 1.994 H4 Z6F 32 Z6F H5 H5 H 0 1 N N N N N N 0.252 14.498 -8.297 -5.321 1.314 1.986 H5 Z6F 33 Z6F H6 H6 H 0 1 N N N N N N 0.653 13.185 -11.022 -4.105 -0.594 1.059 H6 Z6F 34 Z6F H7 H7 H 0 1 N N N N N N 1.596 14.520 -10.276 -5.423 -0.921 -0.093 H7 Z6F 35 Z6F H8 H8 H 0 1 N N N N N N -2.927 18.100 -11.670 -0.555 0.277 1.233 H8 Z6F 36 Z6F H9 H9 H 0 1 N N N N N N -2.672 16.374 -12.096 -0.484 1.223 -0.274 H9 Z6F 37 Z6F H10 H10 H 0 1 N N N N N N -1.195 17.265 -14.047 -0.013 -0.802 -1.571 H10 Z6F 38 Z6F H11 H11 H 0 1 N N N N N N -5.487 17.384 -16.367 3.944 -1.458 -0.333 H11 Z6F 39 Z6F H12 H12 H 0 1 N N N N N N -2.989 16.205 -20.486 5.889 3.037 0.243 H12 Z6F 40 Z6F H13 H13 H 0 1 N N N N N N -1.774 16.690 -18.392 3.472 2.788 -0.152 H13 Z6F 41 Z6F H14 H14 H 0 1 N N N N N N -1.911 19.563 -14.829 0.260 -2.990 -0.415 H14 Z6F 42 Z6F H15 H15 H 0 1 N N N N N N -2.560 19.788 -13.170 -0.262 -2.238 1.111 H15 Z6F 43 Z6F H16 H16 H 0 1 N N N N N N 0.253 18.909 -13.929 -1.921 -2.377 -1.448 H16 Z6F 44 Z6F H17 H17 H 0 1 N N N N N N 0.704 21.146 -13.925 -1.598 -4.572 -0.268 H17 Z6F 45 Z6F H18 H18 H 0 1 N N N N N N -1.015 21.515 -13.558 -2.258 -3.834 1.212 H18 Z6F 46 Z6F H19 H19 H 0 1 N N N N N N 0.735 18.875 -11.570 -3.717 -1.446 -0.068 H19 Z6F 47 Z6F H20 H20 H 0 1 N N N N N N -0.888 19.529 -11.163 -2.662 -1.461 1.369 H20 Z6F 48 Z6F H21 H21 H 0 1 N N N N N N -2.185 14.971 -11.775 -5.766 1.083 -1.976 H21 Z6F 49 Z6F H22 H22 H 0 1 N N N N N N -1.341 13.388 -11.667 -4.623 2.440 -1.789 H22 Z6F 50 Z6F H23 H23 H 0 1 N N N N N N -2.250 15.105 -9.285 -5.616 3.044 0.361 H23 Z6F 51 Z6F H24 H24 H 0 1 N N N N N N -3.084 13.629 -9.879 -6.918 2.925 -0.848 H24 Z6F 52 Z6F H26 H26 H 0 1 N N N N N N -1.790 17.480 -16.210 1.676 1.228 -0.892 H26 Z6F 53 Z6F H27 H27 H 0 1 N N N N N N 0.424 22.175 -11.879 -3.952 -4.926 -0.071 H27 Z6F 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z6F CL1 C17 SING N N 1 Z6F C17 C19 DOUB Y N 2 Z6F C17 C15 SING Y N 3 Z6F C19 C20 SING Y N 4 Z6F F16 C15 SING N N 5 Z6F C15 C14 DOUB Y N 6 Z6F C20 C13 DOUB Y N 7 Z6F C14 C13 SING Y N 8 Z6F C13 N12 SING N N 9 Z6F N12 C10 SING N N 10 Z6F C10 O11 DOUB N N 11 Z6F C10 C09 SING N N 12 Z6F C21 C09 SING N N 13 Z6F C21 C22 SING N N 14 Z6F C09 C08 SING N N 15 Z6F C22 C23 SING N N 16 Z6F C22 C25 SING N N 17 Z6F C23 O24 SING N N 18 Z6F C08 N07 SING N N 19 Z6F C25 N07 SING N N 20 Z6F N07 C06 SING N N 21 Z6F C27 N05 SING N N 22 Z6F C27 C28 SING N N 23 Z6F C06 N05 SING N N 24 Z6F C06 O26 DOUB N N 25 Z6F N05 C04 SING N N 26 Z6F C04 C03 SING N N 27 Z6F C28 N02 SING N N 28 Z6F C03 N02 SING N N 29 Z6F N02 C01 SING N N 30 Z6F C01 H1 SING N N 31 Z6F C01 H2 SING N N 32 Z6F C01 H3 SING N N 33 Z6F C03 H4 SING N N 34 Z6F C03 H5 SING N N 35 Z6F C04 H6 SING N N 36 Z6F C04 H7 SING N N 37 Z6F C08 H8 SING N N 38 Z6F C08 H9 SING N N 39 Z6F C09 H10 SING N N 40 Z6F C14 H11 SING N N 41 Z6F C19 H12 SING N N 42 Z6F C20 H13 SING N N 43 Z6F C21 H14 SING N N 44 Z6F C21 H15 SING N N 45 Z6F C22 H16 SING N N 46 Z6F C23 H17 SING N N 47 Z6F C23 H18 SING N N 48 Z6F C25 H19 SING N N 49 Z6F C25 H20 SING N N 50 Z6F C27 H21 SING N N 51 Z6F C27 H22 SING N N 52 Z6F C28 H23 SING N N 53 Z6F C28 H24 SING N N 54 Z6F N12 H26 SING N N 55 Z6F O24 H27 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z6F SMILES ACDLabs 12.01 "O=C(N1CCN(C)CC1)N1CC(CC(CO)C1)C(=O)Nc1ccc(Cl)c(F)c1" Z6F InChI InChI 1.06 "InChI=1S/C19H26ClFN4O3/c1-23-4-6-24(7-5-23)19(28)25-10-13(12-26)8-14(11-25)18(27)22-15-2-3-16(20)17(21)9-15/h2-3,9,13-14,26H,4-8,10-12H2,1H3,(H,22,27)/t13-,14+/m1/s1" Z6F InChIKey InChI 1.06 YJQIDERPUXKPOK-KGLIPLIRSA-N Z6F SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C(=O)N2C[C@H](CO)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3" Z6F SMILES CACTVS 3.385 "CN1CCN(CC1)C(=O)N2C[CH](CO)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3" Z6F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2C[C@@H](C[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)CO" Z6F SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2CC(CC(C2)C(=O)Nc3ccc(c(c3)F)Cl)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z6F "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5R)-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" Z6F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)-1-(4-methylpiperazin-1-yl)carbonyl-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z6F "Create component" 2023-03-07 RCSB Z6F "Initial release" 2024-03-20 RCSB #