data_Z6W # _chem_comp.id Z6W _chem_comp.name "(5R)-5-[(2R)-2-hydroxynonyl]-beta-D-xylulofuranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H28 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z6W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1IZ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z6W O2 O2 O 0 1 N Y N -37.764 113.205 37.436 4.435 1.257 1.322 O2 Z6W 1 Z6W C1 C1 C 0 1 N N N -37.427 111.710 35.619 4.091 1.607 -1.050 C1 Z6W 2 Z6W C2 C2 C 0 1 N N R -37.289 111.962 37.064 3.826 0.702 0.154 C2 Z6W 3 Z6W C3 C3 C 0 1 N N S -35.922 111.830 37.513 4.394 -0.706 -0.114 C3 Z6W 4 Z6W C4 C4 C 0 1 N N S -36.162 112.031 38.862 3.151 -1.628 -0.087 C4 Z6W 5 Z6W C5 C5 C 0 1 N N R -37.096 110.974 39.030 1.998 -0.626 -0.352 C5 Z6W 6 Z6W O1 O1 O 0 1 N N N -36.913 112.654 34.862 3.555 2.907 -0.796 O1 Z6W 7 Z6W O3 O3 O 0 1 N N N -35.068 112.729 37.017 5.315 -1.077 0.914 O3 Z6W 8 Z6W O4 O4 O 0 1 N N N -35.076 111.932 39.630 3.221 -2.609 -1.123 O4 Z6W 9 Z6W O5 O5 O 0 1 N N N -37.835 110.997 37.856 2.410 0.563 0.360 O5 Z6W 10 Z6W C7 C7 C 0 1 N N R -38.836 110.136 40.476 -0.460 -0.215 -0.173 C7 Z6W 11 Z6W C8 C8 C 0 1 N N N -39.491 110.113 41.725 -1.794 -0.812 0.280 C8 Z6W 12 Z6W C9 C9 C 0 1 N N N -40.867 110.356 41.574 -2.942 0.072 -0.212 C9 Z6W 13 Z6W C10 C10 C 0 1 N N N -41.474 110.364 42.830 -4.275 -0.525 0.242 C10 Z6W 14 Z6W C11 C11 C 0 1 N N N -42.843 110.620 42.692 -5.424 0.358 -0.250 C11 Z6W 15 Z6W C12 C12 C 0 1 N N N -43.399 110.673 43.972 -6.757 -0.239 0.204 C12 Z6W 16 Z6W C13 C13 C 0 1 N N N -43.945 111.969 44.123 -7.905 0.644 -0.289 C13 Z6W 17 Z6W C14 C14 C 0 1 N N N -44.515 112.108 45.390 -9.239 0.047 0.165 C14 Z6W 18 Z6W O7 O7 O 0 1 N N N -39.131 109.231 39.577 -0.263 1.050 0.462 O7 Z6W 19 Z6W C6 C6 C 0 1 N N N -37.869 111.167 40.222 0.679 -1.161 0.210 C6 Z6W 20 Z6W HO2 HO2 H 0 1 N Y N -37.653 113.319 38.373 4.117 2.142 1.548 HO2 Z6W 21 Z6W H11 H11 H 0 1 N N N -36.921 110.763 35.383 5.165 1.684 -1.219 H11 Z6W 22 Z6W H12 H12 H 0 1 N N N -38.498 111.622 35.384 3.614 1.184 -1.934 H12 Z6W 23 Z6W H3 H3 H 0 1 N N N -35.571 110.803 37.333 4.876 -0.743 -1.091 H3 Z6W 24 Z6W H4 H4 H 0 1 N N N -36.666 112.996 39.017 3.038 -2.101 0.889 H4 Z6W 25 Z6W H5 H5 H 0 1 N N N -36.553 110.021 39.106 1.906 -0.420 -1.418 H5 Z6W 26 Z6W HO1 HO1 H 0 1 N N N -37.036 112.429 33.947 3.686 3.536 -1.519 HO1 Z6W 27 Z6W HO3 HO3 H 0 1 N N N -34.199 112.566 37.365 5.703 -1.955 0.795 HO3 Z6W 28 Z6W HO4 HO4 H 0 1 N N N -35.315 112.081 40.537 3.980 -3.204 -1.049 HO4 Z6W 29 Z6W H7 H7 H 0 1 N N N -38.043 109.486 40.876 -0.472 -0.080 -1.255 H7 Z6W 30 Z6W H71 H71 H 0 1 N N N -39.348 109.126 42.188 -1.903 -1.814 -0.134 H71 Z6W 31 Z6W H72 H72 H 0 1 N N N -39.057 110.888 42.373 -1.817 -0.864 1.369 H72 Z6W 32 Z6W H81 H81 H 0 1 N N N -41.017 111.331 41.087 -2.833 1.074 0.203 H81 Z6W 33 Z6W H82 H82 H 0 1 N N N -41.314 109.564 40.955 -2.919 0.124 -1.300 H82 Z6W 34 Z6W H91 H91 H 0 1 N N N -41.332 109.385 43.311 -4.385 -1.528 -0.172 H91 Z6W 35 Z6W H92 H92 H 0 1 N N N -41.017 111.148 43.452 -4.298 -0.578 1.331 H92 Z6W 36 Z6W H101 H101 H 0 0 N N N -42.994 111.581 42.178 -5.314 1.360 0.164 H101 Z6W 37 Z6W H102 H102 H 0 0 N N N -43.317 109.815 42.111 -5.401 0.410 -1.339 H102 Z6W 38 Z6W H111 H111 H 0 0 N N N -44.189 109.914 44.074 -6.866 -1.241 -0.211 H111 Z6W 39 Z6W H112 H112 H 0 0 N N N -42.622 110.498 44.731 -6.780 -0.292 1.292 H112 Z6W 40 Z6W H121 H121 H 0 0 N N N -43.147 112.716 44.000 -7.796 1.646 0.126 H121 Z6W 41 Z6W H122 H122 H 0 0 N N N -44.718 112.129 43.357 -7.882 0.697 -1.377 H122 Z6W 42 Z6W H131 H131 H 0 0 N N N -44.936 113.119 45.495 -9.348 -0.955 -0.249 H131 Z6W 43 Z6W H132 H132 H 0 0 N N N -45.315 111.364 45.516 -9.262 -0.005 1.254 H132 Z6W 44 Z6W H133 H133 H 0 0 N N N -43.744 111.951 46.158 -10.057 0.677 -0.185 H133 Z6W 45 Z6W HO7 HO7 H 0 1 N N N -38.611 109.378 38.796 -0.242 1.006 1.428 HO7 Z6W 46 Z6W H61 H61 H 0 1 N N N -37.178 111.209 41.077 0.484 -2.151 -0.202 H61 Z6W 47 Z6W H62 H62 H 0 1 N N N -38.403 112.125 40.135 0.747 -1.226 1.296 H62 Z6W 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z6W O2 C2 SING N N 1 Z6W C1 C2 SING N N 2 Z6W C1 O1 SING N N 3 Z6W C1 H11 SING N N 4 Z6W C1 H12 SING N N 5 Z6W C2 C3 SING N N 6 Z6W C2 O5 SING N N 7 Z6W C3 C4 SING N N 8 Z6W C3 O3 SING N N 9 Z6W C3 H3 SING N N 10 Z6W C4 C5 SING N N 11 Z6W C4 O4 SING N N 12 Z6W C4 H4 SING N N 13 Z6W C5 O5 SING N N 14 Z6W C5 C6 SING N N 15 Z6W C5 H5 SING N N 16 Z6W O1 HO1 SING N N 17 Z6W O3 HO3 SING N N 18 Z6W O4 HO4 SING N N 19 Z6W C7 C8 SING N N 20 Z6W C7 O7 SING N N 21 Z6W C7 C6 SING N N 22 Z6W C7 H7 SING N N 23 Z6W C8 C9 SING N N 24 Z6W C8 H71 SING N N 25 Z6W C8 H72 SING N N 26 Z6W C9 C10 SING N N 27 Z6W C9 H81 SING N N 28 Z6W C9 H82 SING N N 29 Z6W C10 C11 SING N N 30 Z6W C10 H91 SING N N 31 Z6W C10 H92 SING N N 32 Z6W C11 C12 SING N N 33 Z6W C11 H101 SING N N 34 Z6W C11 H102 SING N N 35 Z6W C12 C13 SING N N 36 Z6W C12 H111 SING N N 37 Z6W C12 H112 SING N N 38 Z6W C13 C14 SING N N 39 Z6W C13 H121 SING N N 40 Z6W C13 H122 SING N N 41 Z6W C14 H131 SING N N 42 Z6W C14 H132 SING N N 43 Z6W C14 H133 SING N N 44 Z6W O7 HO7 SING N N 45 Z6W C6 H61 SING N N 46 Z6W C6 H62 SING N N 47 Z6W HO2 O2 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z6W SMILES ACDLabs 12.01 "OC1C(O)C(OC1(O)CO)CC(O)CCCCCCC" Z6W InChI InChI 1.03 "InChI=1S/C14H28O6/c1-2-3-4-5-6-7-10(16)8-11-12(17)13(18)14(19,9-15)20-11/h10-13,15-19H,2-9H2,1H3/t10-,11-,12-,13+,14-/m1/s1" Z6W InChIKey InChI 1.03 ACFOUPJNYNVPQE-XGFWRYKXSA-N Z6W SMILES_CANONICAL CACTVS 3.370 "CCCCCCC[C@@H](O)C[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O" Z6W SMILES CACTVS 3.370 "CCCCCCC[CH](O)C[CH]1O[C](O)(CO)[CH](O)[CH]1O" Z6W SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(C[C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)O" Z6W SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(CC1C(C(C(O1)(CO)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z6W "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-5-[(2R)-2-hydroxynonyl]-beta-D-xylulofuranose" Z6W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4S,5R)-2-(hydroxymethyl)-5-(2-oxidanylnonyl)oxolane-2,3,4-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z6W "CARBOHYDRATE ISOMER" D PDB ? Z6W "CARBOHYDRATE RING" furanose PDB ? Z6W "CARBOHYDRATE ANOMER" beta PDB ? Z6W "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z6W "Create component" 2012-12-17 RCSB Z6W "Modify atom id" 2020-05-09 RCSB Z6W "Modify component atom id" 2020-07-17 RCSB Z6W "Initial release" 2020-07-29 RCSB ##