data_Z9J # _chem_comp.id Z9J _chem_comp.name "3-{[(3-{[(2-aminoethyl)sulfanyl]methyl}phenyl)methyl]sulfanyl}propanoic acid" _chem_comp.type "PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H19 N O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.425 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z9J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z9J N N N 0 1 N N N Y Y N -6.113 1.390 -1.858 7.552 -2.514 -0.115 N Z9J 1 Z9J CA CA C 0 1 N N N N Y N -5.580 0.184 -1.215 6.528 -1.702 0.555 CA Z9J 2 Z9J C2 C2 C 0 1 N N N N Y N -4.068 0.085 -1.310 5.493 -1.238 -0.472 C2 Z9J 3 Z9J S1 S1 S 0 1 N N N N Y N -3.407 -1.485 -0.693 4.227 -0.236 0.356 S1 Z9J 4 Z9J C3 C3 C 0 1 N N N N Y N -2.923 -1.062 1.010 3.110 0.213 -1.001 C3 Z9J 5 Z9J C4 C4 C 0 1 Y N N N Y N -1.655 -0.248 1.076 1.985 1.061 -0.467 C4 Z9J 6 Z9J C5 C5 C 0 1 Y N N N N N -1.700 1.121 1.305 2.116 2.436 -0.427 C5 Z9J 7 Z9J C6 C6 C 0 1 Y N N N N N -0.528 1.863 1.364 1.084 3.215 0.064 C6 Z9J 8 Z9J C7 C7 C 0 1 Y N N N N N 0.700 1.239 1.194 -0.078 2.618 0.514 C7 Z9J 9 Z9J C8 C8 C 0 1 Y N N N Y N 0.768 -0.129 0.963 -0.209 1.242 0.474 C8 Z9J 10 Z9J C9 C9 C 0 1 N N N N Y N 2.099 -0.813 0.777 -1.476 0.591 0.965 C9 Z9J 11 Z9J S2 S2 S 0 1 N N N N Y N 2.572 -0.980 -0.972 -2.651 0.439 -0.409 S2 Z9J 12 Z9J C10 C10 C 0 1 N N N N Y N 4.263 -1.623 -0.839 -4.086 -0.353 0.367 C10 Z9J 13 Z9J C11 C11 C 0 1 N N N N Y N 5.287 -0.533 -0.563 -5.185 -0.554 -0.679 C11 Z9J 14 Z9J C C C 0 1 N N N N Y Y 5.517 0.365 -1.747 -6.378 -1.211 -0.034 C Z9J 15 Z9J OXT OXT O 0 1 N Y N N Y Y 4.632 1.321 -1.868 -7.469 -1.487 -0.766 OXT Z9J 16 Z9J O O O 0 1 N N N N Y Y 6.443 0.215 -2.522 -6.352 -1.491 1.141 O Z9J 17 Z9J C13 C13 C 0 1 Y N N N Y N -0.416 -0.861 0.907 0.821 0.464 -0.021 C13 Z9J 18 Z9J H H H 0 1 N N N Y Y N -7.109 1.405 -1.766 8.248 -2.833 0.542 H Z9J 19 Z9J H2 H2 H 0 1 N Y N Y Y N -5.726 2.201 -1.419 7.135 -3.291 -0.605 H2 Z9J 20 Z9J HA3 HA3 H 0 1 N N N N Y N -5.865 0.197 -0.153 6.035 -2.300 1.322 HA3 Z9J 21 Z9J HA2 HA2 H 0 1 N N N N Y N -6.021 -0.698 -1.702 6.997 -0.834 1.016 HA2 Z9J 22 Z9J H5 H5 H 0 1 N N N N Y N -3.777 0.195 -2.365 5.985 -0.641 -1.239 H5 Z9J 23 Z9J H6 H6 H 0 1 N N N N Y N -3.628 0.904 -0.722 5.024 -2.107 -0.933 H6 Z9J 24 Z9J H7 H7 H 0 1 N N N N Y N -3.736 -0.483 1.472 3.662 0.774 -1.755 H7 Z9J 25 Z9J H8 H8 H 0 1 N N N N Y N -2.771 -1.994 1.573 2.701 -0.693 -1.450 H8 Z9J 26 Z9J H9 H9 H 0 1 N N N N N N -2.653 1.612 1.438 3.024 2.903 -0.779 H9 Z9J 27 Z9J H10 H10 H 0 1 N N N N N N -0.572 2.927 1.542 1.186 4.290 0.095 H10 Z9J 28 Z9J H11 H11 H 0 1 N N N N N N 1.609 1.821 1.242 -0.884 3.226 0.898 H11 Z9J 29 Z9J H12 H12 H 0 1 N N N N Y N 2.871 -0.225 1.295 -1.247 -0.400 1.358 H12 Z9J 30 Z9J H13 H13 H 0 1 N N N N Y N 2.043 -1.817 1.223 -1.916 1.202 1.754 H13 Z9J 31 Z9J H14 H14 H 0 1 N N N N Y N 4.298 -2.354 -0.018 -3.792 -1.319 0.775 H14 Z9J 32 Z9J H15 H15 H 0 1 N N N N Y N 4.525 -2.121 -1.784 -4.461 0.282 1.171 H15 Z9J 33 Z9J H16 H16 H 0 1 N N N N Y N 4.930 0.079 0.278 -5.480 0.413 -1.087 H16 Z9J 34 Z9J H17 H17 H 0 1 N N N N Y N 6.241 -1.008 -0.292 -4.810 -1.188 -1.482 H17 Z9J 35 Z9J HXT HXT H 0 1 N Y N N Y Y 4.836 1.847 -2.632 -8.209 -1.909 -0.308 HXT Z9J 36 Z9J H19 H19 H 0 1 N N N N Y N -0.372 -1.925 0.729 0.717 -0.610 -0.056 H19 Z9J 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z9J N CA SING N N 1 Z9J CA C2 SING N N 2 Z9J C2 S1 SING N N 3 Z9J S1 C3 SING N N 4 Z9J C3 C4 SING N N 5 Z9J C4 C5 DOUB Y N 6 Z9J C5 C6 SING Y N 7 Z9J C6 C7 DOUB Y N 8 Z9J C7 C8 SING Y N 9 Z9J C8 C9 SING N N 10 Z9J C9 S2 SING N N 11 Z9J S2 C10 SING N N 12 Z9J C10 C11 SING N N 13 Z9J C11 C SING N N 14 Z9J C OXT SING N N 15 Z9J C O DOUB N N 16 Z9J C8 C13 DOUB Y N 17 Z9J C4 C13 SING Y N 18 Z9J N H SING N N 19 Z9J N H2 SING N N 20 Z9J CA HA3 SING N N 21 Z9J CA HA2 SING N N 22 Z9J C2 H5 SING N N 23 Z9J C2 H6 SING N N 24 Z9J C3 H7 SING N N 25 Z9J C3 H8 SING N N 26 Z9J C5 H9 SING N N 27 Z9J C6 H10 SING N N 28 Z9J C7 H11 SING N N 29 Z9J C9 H12 SING N N 30 Z9J C9 H13 SING N N 31 Z9J C10 H14 SING N N 32 Z9J C10 H15 SING N N 33 Z9J C11 H16 SING N N 34 Z9J C11 H17 SING N N 35 Z9J OXT HXT SING N N 36 Z9J C13 H19 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z9J InChI InChI 1.06 "InChI=1S/C13H19NO2S2/c14-5-7-18-10-12-3-1-2-11(8-12)9-17-6-4-13(15)16/h1-3,8H,4-7,9-10,14H2,(H,15,16)" Z9J InChIKey InChI 1.06 HDBIDFYDMNICRF-UHFFFAOYSA-N Z9J SMILES_CANONICAL CACTVS 3.385 "NCCSCc1cccc(CSCCC(O)=O)c1" Z9J SMILES CACTVS 3.385 "NCCSCc1cccc(CSCCC(O)=O)c1" Z9J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCCN)CSCCC(=O)O" Z9J SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCCN)CSCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id Z9J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z9J "Create component" 2024-02-14 PDBE Z9J "Modify descriptor" 2024-02-14 PDBE Z9J "Other modification" 2024-02-14 PDBE Z9J "Initial release" 2024-04-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Z9J _pdbx_chem_comp_synonyms.name "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #