data_Z9L # _chem_comp.id Z9L _chem_comp.name "methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O15 S3" _chem_comp.mon_nstd_parent_comp_id GLC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E03 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z9L O4 O4 O 0 1 N N N 68.982 0.986 -17.638 0.646 2.402 0.177 O4 Z9L 1 Z9L C4 C4 C 0 1 N N R 68.647 1.224 -19.009 0.351 1.039 0.486 C4 Z9L 2 Z9L C5 C5 C 0 1 N N R 69.775 0.751 -19.917 1.390 0.128 -0.174 C5 Z9L 3 Z9L O5 O5 O 0 1 N N N 69.602 1.087 -21.287 1.060 -1.237 0.088 O5 Z9L 4 Z9L C6 C6 C 0 1 N N N 70.041 -0.753 -19.817 2.775 0.437 0.398 C6 Z9L 5 Z9L O6 O6 O 0 1 N N N 69.187 -1.466 -20.708 3.760 -0.329 -0.298 O6 Z9L 6 Z9L S1 S1 S 0 1 N N N 69.206 -3.085 -20.564 5.183 -0.100 0.191 S1 Z9L 7 Z9L O7 O7 O 0 1 N N N 68.508 -3.342 -19.341 6.036 -0.771 -0.726 O7 Z9L 8 Z9L O11 O11 O 0 1 N N N 70.589 -3.429 -20.500 5.289 1.287 0.480 O11 Z9L 9 Z9L O15 O15 O 0 1 N N N 68.546 -3.589 -21.721 5.324 -0.827 1.521 O15 Z9L 10 Z9L C3 C3 C 0 1 N N S 68.327 2.707 -19.211 -1.040 0.683 -0.048 C3 Z9L 11 Z9L O3 O3 O 0 1 N N N 67.144 3.021 -18.461 -2.025 1.478 0.616 O3 Z9L 12 Z9L S2 S2 S 0 1 N N N 67.140 4.195 -17.357 -2.412 2.741 -0.139 S2 Z9L 13 Z9L O8 O8 O 0 1 N N N 67.960 3.712 -16.303 -1.216 3.247 -0.716 O8 Z9L 14 Z9L O9 O9 O 0 1 N N N 65.773 4.326 -16.974 -3.303 2.318 -1.298 O9 Z9L 15 Z9L O10 O10 O 0 1 N N N 67.646 5.364 -17.996 -3.232 3.499 0.741 O10 Z9L 16 Z9L C2 C2 C 0 1 N N R 68.047 2.905 -20.712 -1.314 -0.800 0.220 C2 Z9L 17 Z9L O2 O2 O 0 1 N N N 67.629 4.230 -21.017 -2.579 -1.161 -0.338 O2 Z9L 18 Z9L S3 S3 S 0 1 N N N 66.269 4.363 -21.897 -3.342 -2.196 0.476 S3 Z9L 19 Z9L O12 O12 O 0 1 N N N 65.229 4.364 -20.924 -3.903 -1.483 1.698 O12 Z9L 20 Z9L O13 O13 O 0 1 N N N 66.261 3.212 -22.728 -4.460 -2.582 -0.312 O13 Z9L 21 Z9L O14 O14 O 0 1 N N N 66.382 5.576 -22.633 -2.376 -3.119 0.959 O14 Z9L 22 Z9L C1 C1 C 0 1 N N S 69.217 2.427 -21.579 -0.210 -1.640 -0.429 C1 Z9L 23 Z9L O1 O1 O 0 1 N N N 70.312 3.319 -21.587 -0.232 -1.443 -1.845 O1 Z9L 24 Z9L C7 C7 C 0 1 N N N 70.715 3.715 -22.897 0.606 -2.346 -2.570 C7 Z9L 25 Z9L H4 H4 H 0 1 N N N 67.745 0.648 -19.263 0.375 0.896 1.566 H4 Z9L 26 Z9L H5 H5 H 0 1 N N N 70.689 1.251 -19.564 1.394 0.301 -1.250 H5 Z9L 27 Z9L H61 H61 H 0 1 N N N 71.090 -0.954 -20.080 2.989 1.499 0.279 H61 Z9L 28 Z9L H62 H62 H 0 1 N N N 69.851 -1.088 -18.786 2.796 0.179 1.457 H62 Z9L 29 Z9L H6O H6O H 0 1 N N N 69.165 -4.075 -22.253 6.200 -0.745 1.923 H6O Z9L 30 Z9L H3 H3 H 0 1 N N N 69.181 3.327 -18.900 -1.079 0.874 -1.120 H3 Z9L 31 Z9L H9O H9O H 0 1 N N N 65.671 4.059 -16.068 -3.608 3.053 -1.848 H9O Z9L 32 Z9L H2 H2 H 0 1 N N N 67.205 2.238 -20.949 -1.325 -0.980 1.294 H2 Z9L 33 Z9L H12O H12O H 0 0 N N N 64.710 3.574 -21.014 -4.411 -2.056 2.289 H12O Z9L 34 Z9L H1 H1 H 0 1 N N N 68.823 2.414 -22.606 -0.376 -2.694 -0.206 H1 Z9L 35 Z9L H71 H71 H 0 1 N N N 71.568 4.406 -22.826 0.284 -3.370 -2.382 H71 Z9L 36 Z9L H72 H72 H 0 1 N N N 71.010 2.826 -23.474 0.533 -2.132 -3.636 H72 Z9L 37 Z9L H73 H73 H 0 1 N N N 69.877 4.218 -23.402 1.639 -2.224 -2.244 H73 Z9L 38 Z9L HO4 HO4 H 0 1 N N N 68.272 1.285 -17.082 1.516 2.695 0.482 HO4 Z9L 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z9L O4 C4 SING N N 1 Z9L C4 C5 SING N N 2 Z9L C4 C3 SING N N 3 Z9L C4 H4 SING N N 4 Z9L C5 O5 SING N N 5 Z9L C5 C6 SING N N 6 Z9L C5 H5 SING N N 7 Z9L O5 C1 SING N N 8 Z9L C6 O6 SING N N 9 Z9L C6 H61 SING N N 10 Z9L C6 H62 SING N N 11 Z9L O6 S1 SING N N 12 Z9L S1 O7 DOUB N N 13 Z9L S1 O11 DOUB N N 14 Z9L S1 O15 SING N N 15 Z9L O15 H6O SING N N 16 Z9L C3 O3 SING N N 17 Z9L C3 C2 SING N N 18 Z9L C3 H3 SING N N 19 Z9L O3 S2 SING N N 20 Z9L S2 O8 DOUB N N 21 Z9L S2 O9 SING N N 22 Z9L S2 O10 DOUB N N 23 Z9L O9 H9O SING N N 24 Z9L C2 O2 SING N N 25 Z9L C2 C1 SING N N 26 Z9L C2 H2 SING N N 27 Z9L O2 S3 SING N N 28 Z9L S3 O12 SING N N 29 Z9L S3 O13 DOUB N N 30 Z9L S3 O14 DOUB N N 31 Z9L O12 H12O SING N N 32 Z9L C1 O1 SING N N 33 Z9L C1 H1 SING N N 34 Z9L O1 C7 SING N N 35 Z9L C7 H71 SING N N 36 Z9L C7 H72 SING N N 37 Z9L C7 H73 SING N N 38 Z9L O4 HO4 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z9L SMILES ACDLabs 12.01 "O=S(=O)(O)OCC1OC(OC)C(OS(=O)(=O)O)C(OS(=O)(=O)O)C1O" Z9L InChI InChI 1.03 "InChI=1S/C7H14O15S3/c1-18-7-6(22-25(15,16)17)5(21-24(12,13)14)4(8)3(20-7)2-19-23(9,10)11/h3-8H,2H2,1H3,(H,9,10,11)(H,12,13,14)(H,15,16,17)/t3-,4-,5+,6-,7+/m1/s1" Z9L InChIKey InChI 1.03 KOFWJYYHIXJXAE-ZFYZTMLRSA-N Z9L SMILES_CANONICAL CACTVS 3.370 "CO[C@H]1O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H](O[S](O)(=O)=O)[C@H]1O[S](O)(=O)=O" Z9L SMILES CACTVS 3.370 "CO[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O[S](O)(=O)=O" Z9L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)COS(=O)(=O)O)O)OS(=O)(=O)O)OS(=O)(=O)O" Z9L SMILES "OpenEye OEToolkits" 1.7.6 "COC1C(C(C(C(O1)COS(=O)(=O)O)O)OS(=O)(=O)O)OS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z9L "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside" Z9L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5R,6S)-6-methoxy-3-oxidanyl-4,5-disulfooxy-oxan-2-yl]methyl hydrogen sulfate" # _pdbx_chem_comp_related.comp_id Z9L _pdbx_chem_comp_related.related_comp_id GLC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 Z9L C1 GLC C1 "Carbohydrate core" 2 Z9L C2 GLC C2 "Carbohydrate core" 3 Z9L C3 GLC C3 "Carbohydrate core" 4 Z9L C4 GLC C4 "Carbohydrate core" 5 Z9L C5 GLC C5 "Carbohydrate core" 6 Z9L C6 GLC C6 "Carbohydrate core" 7 Z9L O1 GLC O1 "Carbohydrate core" 8 Z9L O2 GLC O2 "Carbohydrate core" 9 Z9L O3 GLC O3 "Carbohydrate core" 10 Z9L O4 GLC O4 "Carbohydrate core" 11 Z9L O5 GLC O5 "Carbohydrate core" 12 Z9L O6 GLC O6 "Carbohydrate core" 13 Z9L H1 GLC H1 "Carbohydrate core" 14 Z9L H2 GLC H2 "Carbohydrate core" 15 Z9L H3 GLC H3 "Carbohydrate core" 16 Z9L H4 GLC H4 "Carbohydrate core" 17 Z9L H5 GLC H5 "Carbohydrate core" 18 Z9L H61 GLC H61 "Carbohydrate core" 19 Z9L H62 GLC H62 "Carbohydrate core" 20 Z9L HO4 GLC HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z9L "CARBOHYDRATE ISOMER" D PDB ? Z9L "CARBOHYDRATE RING" pyranose PDB ? Z9L "CARBOHYDRATE ANOMER" alpha PDB ? Z9L "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z9L "Create component" 2012-12-18 RCSB Z9L "Modify atom id" 2020-05-09 RCSB Z9L "Modify component atom id" 2020-07-17 RCSB Z9L "Initial release" 2020-07-29 RCSB ##