data_ZA3 # _chem_comp.id ZA3 _chem_comp.name "TRIHYDROXY-[[(2-NITROPHENYL)CARBONYLAMINO]METHYL]BORON" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H10 B N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2010-12-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 240.986 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZA3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2Y2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZA3 O6 O6 O 0 1 N N N N N N 8.279 7.165 40.963 0.311 -1.061 -0.920 O6 ZA3 1 ZA3 C5 C5 C 0 1 N N N N N N 9.132 8.047 40.908 0.147 -0.205 -0.073 C5 ZA3 2 ZA3 N4 N4 N 0 1 N N N N N N 9.551 8.660 39.747 1.110 0.036 0.837 N4 ZA3 3 ZA3 C3 C3 C 0 1 N N N N N N 8.996 8.714 38.504 2.356 -0.734 0.806 C3 ZA3 4 ZA3 B B B -1 1 N N N N N N 9.187 10.110 37.810 3.461 0.074 -0.015 B ZA3 5 ZA3 O2 O2 O 0 1 N N N N N N 8.342 10.141 36.526 3.686 1.280 0.588 O2 ZA3 6 ZA3 O1 O1 O 0 1 N N N N N N 8.818 11.264 38.757 4.624 -0.644 -0.045 O1 ZA3 7 ZA3 C7 C7 C 0 1 Y N N N N N 9.956 8.336 42.170 -1.108 0.576 -0.045 C7 ZA3 8 ZA3 C14 C14 C 0 1 Y N N N N N 10.277 7.318 43.073 -2.340 -0.078 0.029 C14 ZA3 9 ZA3 N15 N15 N 1 1 N N N N N N 10.180 5.918 42.689 -2.393 -1.556 0.080 N15 ZA3 10 ZA3 O16 O16 O -1 1 N N N N N N 10.175 5.190 41.428 -3.466 -2.129 0.025 O16 ZA3 11 ZA3 O17 O17 O 0 1 N N N N N N 10.074 4.803 43.641 -1.363 -2.199 0.177 O17 ZA3 12 ZA3 C8 C8 C 0 1 Y N N N N N 9.960 9.652 42.631 -1.067 1.970 -0.087 C8 ZA3 13 ZA3 C11 C11 C 0 1 Y N N N N N 10.613 9.975 43.821 -2.242 2.694 -0.061 C11 ZA3 14 ZA3 C12 C12 C 0 1 Y N N N N N 11.104 8.963 44.647 -3.459 2.039 0.007 C12 ZA3 15 ZA3 C13 C13 C 0 1 Y N N N N N 10.942 7.637 44.256 -3.507 0.657 0.055 C13 ZA3 16 ZA3 OXT OXT O 0 1 N Y N N N N 10.609 9.807 37.309 3.020 0.279 -1.293 OXT ZA3 17 ZA3 H4 H4 H 0 1 N N N N N N 10.417 9.153 39.832 0.979 0.719 1.513 H4 ZA3 18 ZA3 H31C H31C H 0 0 N N N N N N 9.475 7.947 37.877 2.708 -0.897 1.825 H31C ZA3 19 ZA3 H32C H32C H 0 0 N N N N N N 7.915 8.543 38.615 2.177 -1.696 0.325 H32C ZA3 20 ZA3 H2 H2 H 0 1 N N N N N N 7.420 10.147 36.753 4.348 1.826 0.141 H2 ZA3 21 ZA3 H1 H1 H 0 1 N N N N N N 8.742 10.934 39.645 4.996 -0.827 0.829 H1 ZA3 22 ZA3 HXT HXT H 0 1 N N N N N N 10.605 9.745 36.361 2.197 0.784 -1.349 HXT ZA3 23 ZA3 H8 H8 H 0 1 N N N N N N 9.457 10.423 42.066 -0.117 2.482 -0.140 H8 ZA3 24 ZA3 H13 H13 H 0 1 N N N N N N 11.336 6.846 44.877 -4.460 0.153 0.112 H13 ZA3 25 ZA3 H11 H11 H 0 1 N N N N N N 10.739 11.010 44.103 -2.211 3.773 -0.093 H11 ZA3 26 ZA3 H12 H12 H 0 1 N N N N N N 11.602 9.205 45.575 -4.375 2.610 0.028 H12 ZA3 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZA3 O6 C5 DOUB N N 1 ZA3 C5 N4 SING N N 2 ZA3 C5 C7 SING N N 3 ZA3 N4 C3 SING N N 4 ZA3 C3 B SING N N 5 ZA3 B O2 SING N N 6 ZA3 B O1 SING N N 7 ZA3 B OXT SING N N 8 ZA3 C7 C14 SING Y N 9 ZA3 C7 C8 DOUB Y N 10 ZA3 C14 N15 SING N N 11 ZA3 C14 C13 DOUB Y N 12 ZA3 N15 O16 SING N N 13 ZA3 N15 O17 DOUB N N 14 ZA3 C8 C11 SING Y N 15 ZA3 C11 C12 DOUB Y N 16 ZA3 C12 C13 SING Y N 17 ZA3 N4 H4 SING N N 18 ZA3 C3 H31C SING N N 19 ZA3 C3 H32C SING N N 20 ZA3 O2 H2 SING N N 21 ZA3 O1 H1 SING N N 22 ZA3 OXT HXT SING N N 23 ZA3 C8 H8 SING N N 24 ZA3 C13 H13 SING N N 25 ZA3 C11 H11 SING N N 26 ZA3 C12 H12 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZA3 SMILES_CANONICAL CACTVS 3.352 "O[B-](O)(O)CNC(=O)c1ccccc1[N+]([O-])=O" ZA3 SMILES CACTVS 3.352 "O[B-](O)(O)CNC(=O)c1ccccc1[N+]([O-])=O" ZA3 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "[B-](CNC(=O)c1ccccc1[N+](=O)[O-])(O)(O)O" ZA3 SMILES "OpenEye OEToolkits" 1.6.1 "[B-](CNC(=O)c1ccccc1[N+](=O)[O-])(O)(O)O" ZA3 InChI InChI 1.03 "InChI=1S/C8H10BN2O6/c12-8(10-5-9(13,14)15)6-3-1-2-4-7(6)11(16)17/h1-4,13-15H,5H2,(H,10,12)/q-1" ZA3 InChIKey InChI 1.03 YKMUZZUWSQWVEH-UHFFFAOYSA-N # _pdbx_chem_comp_identifier.comp_id ZA3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "trihydroxy-[[(2-nitrophenyl)carbonylamino]methyl]boron" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZA3 "Create component" 2010-12-15 EBI ZA3 "Modify aromatic_flag" 2011-06-04 RCSB ZA3 "Modify descriptor" 2011-06-04 RCSB ZA3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZA3 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #