data_ZAI # _chem_comp.id ZAI _chem_comp.name "(2~{S})-2-azanyl-6-[[(~{R})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-[[(2~{S})-1-oxidanyl-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]methyl]amino]hexanoic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H29 N4 O9 P S" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.472 _chem_comp.one_letter_code K _chem_comp.three_letter_code ZAI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7YB3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZAI OAP O1 O 0 1 N N N N N N -47.584 8.983 -17.237 -0.297 5.662 0.445 OAP ZAI 1 ZAI PAO P1 P 0 1 N N N N N N -46.494 10.014 -16.841 0.039 4.106 0.689 PAO ZAI 2 ZAI OAR O2 O 0 1 N N N N N N -46.299 11.065 -17.994 1.292 3.756 -0.016 OAR ZAI 3 ZAI OAQ O3 O 0 1 N N N N N N -45.168 9.410 -16.397 0.217 3.836 2.266 OAQ ZAI 4 ZAI OAN O4 O 0 1 N N N N N N -46.939 10.858 -15.564 -1.166 3.201 0.123 OAN ZAI 5 ZAI CAM C1 C 0 1 N N N N N N -48.070 11.780 -15.703 -1.122 1.773 0.096 CAM ZAI 6 ZAI CAF C2 C 0 1 Y N N N N N -48.037 12.655 -14.487 -2.403 1.242 -0.492 CAF ZAI 7 ZAI CAG C3 C 0 1 Y N N N N N -49.056 12.608 -13.646 -3.394 2.110 -0.911 CAG ZAI 8 ZAI NAH N1 N 0 1 Y N N N N N -49.167 13.455 -12.536 -4.519 1.656 -1.428 NAH ZAI 9 ZAI CAI C4 C 0 1 Y N N N N N -48.242 14.361 -12.213 -4.747 0.365 -1.566 CAI ZAI 10 ZAI CAL C5 C 0 1 N N N N N N -48.450 15.189 -10.955 -6.051 -0.102 -2.162 CAL ZAI 11 ZAI CAE C6 C 0 1 Y N N N N N -47.155 14.431 -13.117 -3.801 -0.568 -1.169 CAE ZAI 12 ZAI OAK O5 O 0 1 N N N N N N -46.195 15.350 -12.851 -4.041 -1.898 -1.314 OAK ZAI 13 ZAI CAD C7 C 0 1 Y N N N N N -47.064 13.616 -14.275 -2.601 -0.124 -0.624 CAD ZAI 14 ZAI CAJ C8 C 0 1 N N R N N N -45.939 13.693 -15.228 -1.543 -1.102 -0.184 CAJ ZAI 15 ZAI NAT N2 N 0 1 N N N N N N -45.639 15.208 -15.401 -2.011 -2.473 -0.429 NAT ZAI 16 ZAI CAZ C9 C 0 1 N N S N N N -45.663 16.052 -16.567 -1.732 -3.339 0.724 CAZ ZAI 17 ZAI CBA C10 C 0 1 N N N N N N -44.586 17.230 -16.318 -0.277 -3.735 0.714 CBA ZAI 18 ZAI OBC O6 O 0 1 N N N N N N -44.757 17.694 -15.221 0.269 -4.309 1.797 OBC ZAI 19 ZAI OBB O7 O 0 1 N N N N N N -43.747 17.730 -17.189 0.396 -3.535 -0.269 OBB ZAI 20 ZAI CBD C11 C 0 1 N N N N N N -45.513 15.376 -17.831 -2.046 -2.584 2.017 CBD ZAI 21 ZAI SBE S1 S 0 1 N N N N N N -43.911 14.512 -17.568 -3.697 -1.843 1.898 SBE ZAI 22 ZAI NAS N3 N 0 1 N N N N N N -44.817 13.268 -14.367 -0.308 -0.864 -0.944 NAS ZAI 23 ZAI CAU C12 C 0 1 N N N N N N -43.366 13.150 -14.538 0.861 -0.842 -0.056 CAU ZAI 24 ZAI CAV C13 C 0 1 N N N N N N -42.554 12.763 -13.200 2.138 -0.750 -0.895 CAV ZAI 25 ZAI CAW C14 C 0 1 N N N N N N -41.411 11.807 -13.504 3.355 -0.727 0.031 CAW ZAI 26 ZAI CB C15 C 0 1 N N N N N N -40.701 11.124 -12.240 4.632 -0.634 -0.808 CB ZAI 27 ZAI CA C16 C 0 1 N N S N N N -39.342 10.674 -12.832 5.850 -0.612 0.118 CA ZAI 28 ZAI C C17 C 0 1 N N N N N N -38.408 10.424 -11.650 7.109 -0.644 -0.709 C ZAI 29 ZAI O O8 O 0 1 N N N N N N -38.019 11.337 -10.947 7.720 0.377 -0.920 O ZAI 30 ZAI N N4 N 0 1 N N N N N N -39.536 9.446 -13.667 5.827 0.614 0.928 N ZAI 31 ZAI H1 H1 H 0 1 N N N N N N -47.919 9.192 -18.101 0.388 6.266 0.762 H1 ZAI 32 ZAI H2 H2 H 0 1 N N N N N N -44.461 9.787 -16.907 -0.567 4.045 2.792 H2 ZAI 33 ZAI H3 H3 H 0 1 N N N N N N -47.960 12.386 -16.614 -0.279 1.447 -0.514 H3 ZAI 34 ZAI H4 H4 H 0 1 N N N N N N -49.016 11.221 -15.747 -1.003 1.395 1.111 H4 ZAI 35 ZAI H5 H5 H 0 1 N N N N N N -49.838 11.884 -13.823 -3.244 3.175 -0.815 H5 ZAI 36 ZAI H6 H6 H 0 1 N N N N N N -49.394 14.894 -10.473 -5.945 -0.188 -3.243 H6 ZAI 37 ZAI H7 H7 H 0 1 N N N N N N -47.614 15.017 -10.261 -6.314 -1.073 -1.744 H7 ZAI 38 ZAI H8 H8 H 0 1 N N N N N N -48.492 16.256 -11.221 -6.835 0.618 -1.929 H8 ZAI 39 ZAI H9 H9 H 0 1 N N N N N N -46.407 15.806 -12.045 -3.750 -2.260 -2.162 H9 ZAI 40 ZAI H10 H10 H 0 1 N N N N N N -46.063 13.138 -16.170 -1.345 -0.971 0.879 H10 ZAI 41 ZAI H11 H11 H 0 1 N N N N N N -44.707 15.308 -15.053 -1.603 -2.850 -1.272 H11 ZAI 42 ZAI H13 H13 H 0 1 N N N N N N -46.641 16.554 -16.583 -2.352 -4.234 0.665 H13 ZAI 43 ZAI H14 H14 H 0 1 N N N N N N -44.198 18.454 -15.107 1.206 -4.545 1.743 H14 ZAI 44 ZAI H15 H15 H 0 1 N N N N N N -45.457 16.088 -18.667 -2.018 -3.277 2.858 H15 ZAI 45 ZAI H16 H16 H 0 1 N N N N N N -46.333 14.664 -18.010 -1.305 -1.799 2.168 H16 ZAI 46 ZAI H17 H17 H 0 1 N N N N N N -43.750 13.891 -18.699 -3.836 -1.223 3.083 H17 ZAI 47 ZAI H18 H18 H 0 1 N N N N N N -44.898 13.881 -13.581 -0.195 -1.551 -1.675 H18 ZAI 48 ZAI H20 H20 H 0 1 N N N N N N -43.173 12.373 -15.292 0.798 0.021 0.607 H20 ZAI 49 ZAI H21 H21 H 0 1 N N N N N N -42.985 14.116 -14.902 0.883 -1.756 0.539 H21 ZAI 50 ZAI H22 H22 H 0 1 N N N N N N -42.144 13.680 -12.752 2.200 -1.613 -1.557 H22 ZAI 51 ZAI H23 H23 H 0 1 N N N N N N -43.243 12.283 -12.489 2.116 0.164 -1.489 H23 ZAI 52 ZAI H24 H24 H 0 1 N N N N N N -41.807 11.002 -14.141 3.293 0.136 0.694 H24 ZAI 53 ZAI H25 H25 H 0 1 N N N N N N -40.643 12.368 -14.057 3.377 -1.640 0.626 H25 ZAI 54 ZAI H26 H26 H 0 1 N N N N N N -40.560 11.847 -11.423 4.695 -1.498 -1.470 H26 ZAI 55 ZAI H27 H27 H 0 1 N N N N N N -41.281 10.264 -11.873 4.610 0.279 -1.402 H27 ZAI 56 ZAI H28 H28 H 0 1 N N N N N N -38.935 11.485 -13.453 5.824 -1.482 0.774 H28 ZAI 57 ZAI H30 H30 H 0 1 N N N N N N -38.657 9.159 -14.047 6.586 0.622 1.593 H30 ZAI 58 ZAI H31 H31 H 0 1 N N N N N N -39.909 8.712 -13.099 5.851 1.435 0.342 H31 ZAI 59 ZAI OXT OXT O 0 1 N Y N N N N -38.087 9.075 -11.339 7.554 -1.808 -1.210 O1 ZAI 60 ZAI HXT HXT H 0 1 N Y N N N N -37.560 9.048 -10.549 8.366 -1.779 -1.734 H12 ZAI 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZAI OAR PAO DOUB N N 1 ZAI CBD SBE SING N N 2 ZAI CBD CAZ SING N N 3 ZAI OAP PAO SING N N 4 ZAI OBB CBA DOUB N N 5 ZAI PAO OAQ SING N N 6 ZAI PAO OAN SING N N 7 ZAI CAZ CBA SING N N 8 ZAI CAZ NAT SING N N 9 ZAI CBA OBC SING N N 10 ZAI CAM OAN SING N N 11 ZAI CAM CAF SING N N 12 ZAI NAT CAJ SING N N 13 ZAI CAJ NAS SING N N 14 ZAI CAJ CAD SING N N 15 ZAI CAU NAS SING N N 16 ZAI CAU CAV SING N N 17 ZAI CAF CAD SING Y N 18 ZAI CAF CAG DOUB Y N 19 ZAI CAD CAE DOUB Y N 20 ZAI N CA SING N N 21 ZAI CAG NAH SING Y N 22 ZAI CAW CAV SING N N 23 ZAI CAW CB SING N N 24 ZAI CAE OAK SING N N 25 ZAI CAE CAI SING Y N 26 ZAI CA CB SING N N 27 ZAI CA C SING N N 28 ZAI NAH CAI DOUB Y N 29 ZAI CAI CAL SING N N 30 ZAI C O DOUB N N 31 ZAI OAP H1 SING N N 32 ZAI OAQ H2 SING N N 33 ZAI CAM H3 SING N N 34 ZAI CAM H4 SING N N 35 ZAI CAG H5 SING N N 36 ZAI CAL H6 SING N N 37 ZAI CAL H7 SING N N 38 ZAI CAL H8 SING N N 39 ZAI OAK H9 SING N N 40 ZAI CAJ H10 SING N N 41 ZAI NAT H11 SING N N 42 ZAI CAZ H13 SING N N 43 ZAI OBC H14 SING N N 44 ZAI CBD H15 SING N N 45 ZAI CBD H16 SING N N 46 ZAI SBE H17 SING N N 47 ZAI NAS H18 SING N N 48 ZAI CAU H20 SING N N 49 ZAI CAU H21 SING N N 50 ZAI CAV H22 SING N N 51 ZAI CAV H23 SING N N 52 ZAI CAW H24 SING N N 53 ZAI CAW H25 SING N N 54 ZAI CB H26 SING N N 55 ZAI CB H27 SING N N 56 ZAI CA H28 SING N N 57 ZAI N H30 SING N N 58 ZAI N H31 SING N N 59 ZAI C OXT SING N N 60 ZAI OXT HXT SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZAI InChI InChI 1.06 "InChI=1S/C17H29N4O9PS/c1-9-14(22)13(10(6-20-9)7-30-31(27,28)29)15(21-12(8-32)17(25)26)19-5-3-2-4-11(18)16(23)24/h6,11-12,15,19,21-22,32H,2-5,7-8,18H2,1H3,(H,23,24)(H,25,26)(H2,27,28,29)/t11-,12+,15+/m0/s1" ZAI InChIKey InChI 1.06 ZOOIRKLCYJDYSX-YWPYICTPSA-N ZAI SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H](NCCCC[C@H](N)C(O)=O)N[C@H](CS)C(O)=O)c1O" ZAI SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH](NCCCC[CH](N)C(O)=O)N[CH](CS)C(O)=O)c1O" ZAI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@H](NCCCC[C@@H](C(=O)O)N)N[C@H](CS)C(=O)O)O" ZAI SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C(NCCCCC(C(=O)O)N)NC(CS)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id ZAI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(~{R})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-[[(2~{S})-1-oxidanyl-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]methyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZAI "Create component" 2022-07-05 PDBJ ZAI "Modify parent residue" 2022-07-06 PDBJ ZAI "Initial release" 2023-07-05 RCSB ZAI "Modify PCM" 2024-09-27 PDBE #