data_ZAP
#
_chem_comp.id ZAP
_chem_comp.name "[N-(BENZYLOXYCARBONYL)AMINO](4-AMIDINOPHENYL)METHANE-PHOSPHONATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H18 N3 O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Z-AMIDINOPHENYLMETHANE-PHOSPHONATE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 363.305
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZAP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MAX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZAP C1 C1 C 0 1 N N N N N N -2.274 13.477 15.366 2.415 0.189 5.485 C1 ZAP 1
ZAP C2 C2 C 0 1 Y N N N N N -1.889 14.140 16.534 1.532 -0.005 4.311 C2 ZAP 2
ZAP C3 C3 C 0 1 Y N N N N N -2.303 15.436 16.762 1.648 0.833 3.203 C3 ZAP 3
ZAP C4 C4 C 0 1 Y N N N N N -1.965 16.100 17.924 0.823 0.647 2.112 C4 ZAP 4
ZAP C5 C5 C 0 1 Y N N N N N -1.198 15.498 18.888 -0.116 -0.367 2.117 C5 ZAP 5
ZAP C6 C6 C 0 1 Y N N N N N -0.780 14.196 18.725 -0.236 -1.201 3.215 C6 ZAP 6
ZAP C7 C7 C 0 1 Y N N N N N -1.135 13.535 17.537 0.587 -1.030 4.308 C7 ZAP 7
ZAP C8 C8 C 0 1 N N R N N N -0.815 16.402 20.064 -1.014 -0.564 0.923 C8 ZAP 8
ZAP C9 C9 C 0 1 N N N N N N 0.274 18.443 20.332 -0.591 -0.725 -1.470 C9 ZAP 9
ZAP C10 C10 C 0 1 N N N N N N 2.447 19.105 19.227 -0.247 -0.966 -3.857 C10 ZAP 10
ZAP C11 C11 C 0 1 Y N N N N N 2.156 20.094 18.088 0.602 -0.348 -4.938 C11 ZAP 11
ZAP C12 C12 C 0 1 Y N N N N N 3.204 20.599 17.334 1.845 -0.880 -5.228 C12 ZAP 12
ZAP C13 C13 C 0 1 Y N N N N N 2.967 21.483 16.296 2.624 -0.314 -6.219 C13 ZAP 13
ZAP C14 C14 C 0 1 Y N N N N N 1.667 21.860 15.997 2.161 0.783 -6.921 C14 ZAP 14
ZAP C15 C15 C 0 1 Y N N N N N 0.613 21.368 16.739 0.918 1.314 -6.631 C15 ZAP 15
ZAP C16 C16 C 0 1 Y N N N N N 0.857 20.485 17.775 0.137 0.745 -5.643 C16 ZAP 16
ZAP N1 N1 N 0 1 N N N N N N -3.022 14.090 14.438 3.300 1.143 5.483 N1 ZAP 17
ZAP N2 N2 N 0 1 N N N N N N -1.878 12.239 15.071 2.298 -0.640 6.579 N2 ZAP 18
ZAP N3 N3 N 0 1 N N N N N N 0.345 17.219 19.817 -0.314 -0.137 -0.289 N3 ZAP 19
ZAP O3 O3 O 0 1 N N N N N N -0.730 19.123 20.143 -1.422 -1.610 -1.528 O3 ZAP 20
ZAP O4 O4 O 0 1 N N N N N N 1.487 19.196 20.322 0.051 -0.332 -2.585 O4 ZAP 21
ZAP O1P O1P O 0 1 N N N N N N -0.297 16.762 22.733 -3.237 -0.004 2.358 O1P ZAP 22
ZAP O2P O2P O 0 1 N N N N N N -2.024 15.116 22.212 -2.138 1.984 1.258 O2P ZAP 23
ZAP O3P O3P O 0 1 N Y N N N N 0.404 14.729 22.001 -3.489 0.216 -0.143 O3P ZAP 24
ZAP P P P 0 1 N N N N N N -0.747 15.731 21.779 -2.529 0.427 1.132 P ZAP 25
ZAP H3 H3 H 0 1 N N N N N N -2.914 15.950 16.002 2.381 1.625 3.198 H3 ZAP 26
ZAP H4 H4 H 0 1 N N N N N N -2.315 17.133 18.085 0.911 1.295 1.253 H4 ZAP 27
ZAP H6 H6 H 0 1 N N N N N N -0.185 13.703 19.512 -0.972 -1.992 3.213 H6 ZAP 28
ZAP H7 H7 H 0 1 N N N N N N -0.806 12.493 17.384 0.493 -1.682 5.164 H7 ZAP 29
ZAP H8 H8 H 0 1 N N N N N N -1.748 17.011 20.077 -1.279 -1.618 0.838 H8 ZAP 30
ZAP H101 1H10 H 0 0 N N N N N N 2.511 18.061 18.840 -0.032 -2.032 -3.791 H101 ZAP 31
ZAP H102 2H10 H 0 0 N N N N N N 3.490 19.225 19.601 -1.300 -0.821 -4.096 H102 ZAP 32
ZAP H12 H12 H 0 1 N N N N N N 4.238 20.293 17.562 2.207 -1.737 -4.680 H12 ZAP 33
ZAP H13 H13 H 0 1 N N N N N N 3.810 21.885 15.709 3.596 -0.728 -6.446 H13 ZAP 34
ZAP H14 H14 H 0 1 N N N N N N 1.470 22.555 15.163 2.770 1.226 -7.695 H14 ZAP 35
ZAP H15 H15 H 0 1 N N N N N N -0.419 21.678 16.505 0.556 2.172 -7.179 H15 ZAP 36
ZAP H16 H16 H 0 1 N N N N N N 0.007 20.089 18.357 -0.833 1.160 -5.416 H16 ZAP 37
ZAP HN1 HN1 H 0 1 N N N N N N -2.902 14.816 15.144 3.382 1.727 4.713 HN1 ZAP 38
ZAP HN21 1HN2 H 0 0 N N N N N N -2.159 11.755 14.218 2.876 -0.513 7.348 HN21 ZAP 39
ZAP HN22 2HN2 H 0 0 N N N N N N -2.130 11.641 15.858 1.636 -1.349 6.582 HN22 ZAP 40
ZAP HN3 HN3 H 0 1 N N N N N N 1.179 16.943 19.300 0.349 0.568 -0.243 HN3 ZAP 41
ZAP HOP2 2HOP H 0 0 N N N N N N -1.988 14.770 23.096 -2.966 2.472 1.367 HOP2 ZAP 42
ZAP HOP3 3HOP H 0 0 N N N N N N 0.439 14.383 22.885 -2.991 0.509 -0.918 HOP3 ZAP 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZAP C1 C2 SING N N 1
ZAP C1 N1 DOUB N E 2
ZAP C1 N2 SING N N 3
ZAP C2 C3 DOUB Y N 4
ZAP C2 C7 SING Y N 5
ZAP C3 C4 SING Y N 6
ZAP C3 H3 SING N N 7
ZAP C4 C5 DOUB Y N 8
ZAP C4 H4 SING N N 9
ZAP C5 C6 SING Y N 10
ZAP C5 C8 SING N N 11
ZAP C6 C7 DOUB Y N 12
ZAP C6 H6 SING N N 13
ZAP C7 H7 SING N N 14
ZAP C8 N3 SING N N 15
ZAP C8 P SING N N 16
ZAP C8 H8 SING N N 17
ZAP C9 N3 SING N N 18
ZAP C9 O3 DOUB N N 19
ZAP C9 O4 SING N N 20
ZAP C10 C11 SING N N 21
ZAP C10 O4 SING N N 22
ZAP C10 H101 SING N N 23
ZAP C10 H102 SING N N 24
ZAP C11 C12 DOUB Y N 25
ZAP C11 C16 SING Y N 26
ZAP C12 C13 SING Y N 27
ZAP C12 H12 SING N N 28
ZAP C13 C14 DOUB Y N 29
ZAP C13 H13 SING N N 30
ZAP C14 C15 SING Y N 31
ZAP C14 H14 SING N N 32
ZAP C15 C16 DOUB Y N 33
ZAP C15 H15 SING N N 34
ZAP C16 H16 SING N N 35
ZAP N1 HN1 SING N N 36
ZAP N2 HN21 SING N N 37
ZAP N2 HN22 SING N N 38
ZAP N3 HN3 SING N N 39
ZAP O1P P DOUB N N 40
ZAP O2P P SING N N 41
ZAP O2P HOP2 SING N N 42
ZAP O3P P SING N N 43
ZAP O3P HOP3 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZAP SMILES ACDLabs 10.04 "O=P(O)(O)C(c1ccc(C(=[N@H])N)cc1)NC(=O)OCc2ccccc2"
ZAP SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(cc1)[C@H](NC(=O)OCc2ccccc2)[P](O)(O)=O"
ZAP SMILES CACTVS 3.341 "NC(=N)c1ccc(cc1)[CH](NC(=O)OCc2ccccc2)[P](O)(O)=O"
ZAP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1ccc(cc1)[C@H](NC(=O)OCc2ccccc2)P(=O)(O)O)/N"
ZAP SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cc1)C(NC(=O)OCc2ccccc2)P(=O)(O)O)N"
ZAP InChI InChI 1.03 "InChI=1S/C16H18N3O5P/c17-14(18)12-6-8-13(9-7-12)15(25(21,22)23)19-16(20)24-10-11-4-2-1-3-5-11/h1-9,15H,10H2,(H3,17,18)(H,19,20)(H2,21,22,23)/t15-/m1/s1"
ZAP InChIKey InChI 1.03 FSNDLCSOLUMYRH-OAHLLOKOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZAP "SYSTEMATIC NAME" ACDLabs 10.04 "[(R)-{[(benzyloxy)carbonyl]amino}(4-carbamimidoylphenyl)methyl]phosphonic acid"
ZAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(R)-(4-carbamimidoylphenyl)-phenylmethoxycarbonylamino-methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZAP "Create component" 1999-07-08 EBI
ZAP "Modify descriptor" 2011-06-04 RCSB
ZAP "Modify synonyms" 2021-03-01 PDBE
ZAP "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZAP
_pdbx_chem_comp_synonyms.name Z-AMIDINOPHENYLMETHANE-PHOSPHONATE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ZAP
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#