data_ZAS # _chem_comp.id ZAS _chem_comp.name "5'-azido-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-05 _chem_comp.pdbx_modified_date 2024-05-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.254 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZAS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V7W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZAS N53 N53 N -1 1 N N N N N N 16.504 5.043 10.646 -6.346 -1.506 1.010 N53 ZAS 1 ZAS N52 N52 N 1 1 N N N N N N 16.762 5.981 11.448 -5.278 -1.520 0.660 N52 ZAS 2 ZAS N51 N51 N 0 1 N N N N N N 17.003 6.907 12.258 -4.210 -1.535 0.310 N51 ZAS 3 ZAS "C5'" "C5'" C 0 1 N N N N N N 17.497 6.490 13.528 -3.731 -0.512 -0.623 "C5'" ZAS 4 ZAS "C4'" "C4'" C 0 1 N N R N N N 18.839 6.982 13.749 -2.584 0.269 0.020 "C4'" ZAS 5 ZAS "O4'" "O4'" O 0 1 N N N N N N 19.091 8.097 13.029 -1.412 -0.566 0.141 "O4'" ZAS 6 ZAS "C3'" "C3'" C 0 1 N N S N N N 18.509 7.480 15.136 -2.146 1.434 -0.895 "C3'" ZAS 7 ZAS "O3'" "O3'" O 0 1 N N N N N N 19.648 7.175 15.875 -2.741 2.660 -0.466 "O3'" ZAS 8 ZAS "C2'" "C2'" C 0 1 N N R N N N 18.421 8.965 14.953 -0.612 1.488 -0.726 "C2'" ZAS 9 ZAS "O2'" "O2'" O 0 1 N N N N N N 18.842 9.582 16.120 -0.212 2.750 -0.186 "O2'" ZAS 10 ZAS "C1'" "C1'" C 0 1 N N R N N N 19.522 9.073 13.926 -0.303 0.350 0.273 "C1'" ZAS 11 ZAS N9 N9 N 0 1 Y N N N N N 19.607 10.344 13.249 0.953 -0.314 -0.083 N9 ZAS 12 ZAS C8 C8 C 0 1 Y N N N N N 18.643 11.117 12.818 1.088 -1.407 -0.886 C8 ZAS 13 ZAS N7 N7 N 0 1 Y N N N N N 19.171 12.178 12.266 2.344 -1.732 -0.988 N7 ZAS 14 ZAS C5 C5 C 0 1 Y N N N N N 20.470 12.078 12.347 3.093 -0.870 -0.259 C5 ZAS 15 ZAS C4 C4 C 0 1 Y N N N N N 20.729 10.908 12.984 2.210 0.053 0.326 C4 ZAS 16 ZAS N3 N3 N 0 1 Y N N N N N 21.949 10.530 13.214 2.701 1.016 1.099 N3 ZAS 17 ZAS C2 C2 C 0 1 Y N N N N N 22.926 11.283 12.828 3.996 1.107 1.317 C2 ZAS 18 ZAS N1 N1 N 0 1 Y N N N N N 22.732 12.403 12.210 4.864 0.263 0.789 N1 ZAS 19 ZAS C6 C6 C 0 1 Y N N N N N 21.531 12.845 11.948 4.467 -0.729 -0.000 C6 ZAS 20 ZAS N6 N6 N 0 1 N N N N N N 21.411 13.985 11.342 5.384 -1.609 -0.548 N6 ZAS 21 ZAS "H5'" H2 H 0 1 N N N N N N 16.837 6.880 14.317 -3.377 -0.991 -1.536 "H5'" ZAS 22 ZAS "H5''" H3 H 0 0 N N N N N N 17.506 5.391 13.567 -4.546 0.171 -0.863 "H5''" ZAS 23 ZAS "H4'" H4 H 0 1 N N N N N N 19.618 6.205 13.737 -2.885 0.647 0.998 "H4'" ZAS 24 ZAS "H3'" H5 H 0 1 N N N N N N 17.579 7.045 15.530 -2.411 1.225 -1.932 "H3'" ZAS 25 ZAS "HO3'" H6 H 0 0 N N N N N N 19.528 7.457 16.774 -3.708 2.659 -0.494 "HO3'" ZAS 26 ZAS "H2'" H7 H 0 1 N N N N N N 17.444 9.298 14.573 -0.115 1.308 -1.679 "H2'" ZAS 27 ZAS "HO8'" H8 H 0 0 N N N N N N 18.157 9.521 16.776 -0.436 3.506 -0.745 "HO8'" ZAS 28 ZAS "H1'" H9 H 0 1 N N N N N N 20.487 8.807 14.382 -0.253 0.741 1.289 "H1'" ZAS 29 ZAS H8 H10 H 0 1 N N N N N N 17.586 10.912 12.904 0.272 -1.928 -1.367 H8 ZAS 30 ZAS H2 H11 H 0 1 N N N N N N 23.939 10.966 13.028 4.362 1.902 1.950 H2 ZAS 31 ZAS H61 H12 H 0 1 N N N N N N 22.318 14.365 11.162 6.329 -1.505 -0.357 H61 ZAS 32 ZAS H62 H13 H 0 1 N N N N N N 20.928 13.853 10.477 5.082 -2.329 -1.123 H62 ZAS 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZAS N53 N52 DOUB N N 1 ZAS N6 C6 SING N N 2 ZAS N52 N51 DOUB N N 3 ZAS C6 N1 DOUB Y N 4 ZAS C6 C5 SING Y N 5 ZAS N1 C2 SING Y N 6 ZAS N51 "C5'" SING N N 7 ZAS N7 C5 SING Y N 8 ZAS N7 C8 DOUB Y N 9 ZAS C5 C4 DOUB Y N 10 ZAS C8 N9 SING Y N 11 ZAS C2 N3 DOUB Y N 12 ZAS C4 N3 SING Y N 13 ZAS C4 N9 SING Y N 14 ZAS "O4'" "C4'" SING N N 15 ZAS "O4'" "C1'" SING N N 16 ZAS N9 "C1'" SING N N 17 ZAS "C5'" "C4'" SING N N 18 ZAS "C4'" "C3'" SING N N 19 ZAS "C1'" "C2'" SING N N 20 ZAS "C2'" "C3'" SING N N 21 ZAS "C2'" "O2'" SING N N 22 ZAS "C3'" "O3'" SING N N 23 ZAS "C5'" "H5'" SING N N 24 ZAS "C5'" "H5''" SING N N 25 ZAS "C4'" "H4'" SING N N 26 ZAS "C3'" "H3'" SING N N 27 ZAS "O3'" "HO3'" SING N N 28 ZAS "C2'" "H2'" SING N N 29 ZAS "O2'" "HO8'" SING N N 30 ZAS "C1'" "H1'" SING N N 31 ZAS C8 H8 SING N N 32 ZAS C2 H2 SING N N 33 ZAS N6 H61 SING N N 34 ZAS N6 H62 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZAS SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC(C/N=[N+]=[N-])C(O)C1O" ZAS InChI InChI 1.06 "InChI=1S/C10H12N8O3/c11-8-5-9(14-2-13-8)18(3-15-5)10-7(20)6(19)4(21-10)1-16-17-12/h2-4,6-7,10,19-20H,1H2,(H2,11,13,14)/t4-,6-,7-,10-/m1/s1" ZAS InChIKey InChI 1.06 SKWSYTVBPHWKHX-KQYNXXCUSA-N ZAS SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]3O" ZAS SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN=[N+]=[N-])[CH](O)[CH]3O" ZAS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN=[N+]=[N-])O)O)N" ZAS SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN=[N+]=[N-])O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZAS "SYSTEMATIC NAME" ACDLabs 12.01 "5'-azido-5'-deoxyadenosine" ZAS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(azidomethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZAS "Create component" 2012-01-05 RCSB ZAS "Other modification" 2024-05-08 RCSB #