data_ZBF # _chem_comp.id ZBF _chem_comp.name "L-gamma-glutamyl-N-(3-ethynylphenyl)-N-hydroxy-L-glutaminylglycine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-19 _chem_comp.pdbx_modified_date 2015-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZBF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZBF O7 O7 O 0 1 N N N -7.152 10.281 3.338 3.120 0.082 -0.606 O7 ZBF 1 ZBF C C C 0 1 N N N -8.150 10.340 2.724 2.510 -0.722 0.066 C ZBF 2 ZBF N N N 0 1 N N N -9.236 9.681 3.181 3.126 -1.835 0.511 N ZBF 3 ZBF C12 C12 C 0 1 Y N N -10.329 9.393 2.460 4.438 -2.116 0.111 C12 ZBF 4 ZBF C19 C19 C 0 1 Y N N -10.261 8.756 1.347 4.728 -3.317 -0.524 C19 ZBF 5 ZBF C18 C18 C 0 1 Y N N -11.396 8.608 0.657 6.022 -3.596 -0.926 C18 ZBF 6 ZBF C17 C17 C 0 1 Y N N -12.584 9.077 1.076 7.032 -2.684 -0.698 C17 ZBF 7 ZBF C14 C14 C 0 1 Y N N -12.669 9.687 2.226 6.749 -1.474 -0.061 C14 ZBF 8 ZBF C15 C15 C 0 1 N N N -13.833 10.131 2.737 7.796 -0.526 0.175 C15 ZBF 9 ZBF C16 C16 C 0 1 N N N -14.748 10.542 3.264 8.653 0.252 0.369 C16 ZBF 10 ZBF C13 C13 C 0 1 Y N N -11.540 9.845 2.914 5.445 -1.193 0.344 C13 ZBF 11 ZBF O O O 0 1 N N N -9.349 9.344 4.493 2.447 -2.721 1.382 O ZBF 12 ZBF C1 C1 C 0 1 N N N -8.129 11.201 1.486 1.064 -0.473 0.410 C1 ZBF 13 ZBF C2 C2 C 0 1 N N N -7.356 12.456 1.747 0.612 0.849 -0.212 C2 ZBF 14 ZBF C3 C3 C 0 1 N N S -6.413 12.841 0.630 -0.856 1.102 0.137 C3 ZBF 15 ZBF C9 C9 C 0 1 N N N -6.057 14.322 0.724 -1.267 2.460 -0.371 C9 ZBF 16 ZBF O6 O6 O 0 1 N N N -5.111 14.710 1.387 -2.168 2.559 -1.176 O6 ZBF 17 ZBF N3 N3 N 0 1 N N N -6.847 15.136 0.051 -0.632 3.565 0.070 N3 ZBF 18 ZBF C10 C10 C 0 1 N N N -7.159 16.456 0.536 -1.032 4.885 -0.424 C10 ZBF 19 ZBF C11 C11 C 0 1 N N N -7.793 17.344 -0.500 -0.173 5.943 0.219 C11 ZBF 20 ZBF O5 O5 O 0 1 N N N -7.319 18.348 -0.972 0.685 5.626 1.010 O5 ZBF 21 ZBF O4 O4 O 0 1 N N N -8.906 16.903 -0.800 -0.361 7.236 -0.085 O4 ZBF 22 ZBF N1 N1 N 0 1 N N N -5.246 11.998 0.588 -1.691 0.074 -0.488 N1 ZBF 23 ZBF C4 C4 C 0 1 N N N -4.387 12.065 -0.419 -2.892 -0.234 0.041 C4 ZBF 24 ZBF O3 O3 O 0 1 N N N -4.503 12.883 -1.309 -3.281 0.341 1.036 O3 ZBF 25 ZBF C5 C5 C 0 1 N N N -3.285 11.035 -0.411 -3.751 -1.292 -0.602 C5 ZBF 26 ZBF C6 C6 C 0 1 N N N -2.075 11.281 -1.315 -5.050 -1.445 0.191 C6 ZBF 27 ZBF C7 C7 C 0 1 N N S -1.209 12.481 -0.954 -5.922 -2.519 -0.463 C7 ZBF 28 ZBF N2 N2 N 0 1 N N N -0.258 12.822 -1.997 -6.333 -2.070 -1.800 N2 ZBF 29 ZBF C8 C8 C 0 1 N N N -0.306 12.226 0.237 -7.145 -2.758 0.385 C8 ZBF 30 ZBF O2 O2 O 0 1 N N N 0.792 11.927 0.169 -8.199 -2.249 0.082 O2 ZBF 31 ZBF O1 O1 O 0 1 N N N -0.895 12.387 1.266 -7.064 -3.535 1.476 O1 ZBF 32 ZBF H1 H1 H 0 1 N N N -9.326 8.357 0.984 3.942 -4.035 -0.705 H1 ZBF 33 ZBF H2 H2 H 0 1 N N N -11.357 8.084 -0.287 6.242 -4.531 -1.418 H2 ZBF 34 ZBF H3 H3 H 0 1 N N N -13.464 8.949 0.463 8.041 -2.906 -1.013 H3 ZBF 35 ZBF H4 H4 H 0 1 N N N -15.604 10.926 3.757 9.421 0.948 0.543 H4 ZBF 36 ZBF H5 H5 H 0 1 N N N -11.581 10.350 3.868 5.220 -0.257 0.833 H5 ZBF 37 ZBF H6 H6 H 0 1 N N N -8.520 9.496 4.932 2.969 -3.491 1.646 H6 ZBF 38 ZBF H7 H7 H 0 1 N N N -9.160 11.460 1.205 0.452 -1.286 0.020 H7 ZBF 39 ZBF H8 H8 H 0 1 N N N -7.654 10.645 0.664 0.952 -0.422 1.493 H8 ZBF 40 ZBF H9 H9 H 0 1 N N N -6.766 12.314 2.664 1.223 1.663 0.178 H9 ZBF 41 ZBF H10 H10 H 0 1 N N N -8.071 13.278 1.895 0.724 0.798 -1.295 H10 ZBF 42 ZBF H11 H11 H 0 1 N N N -6.961 12.705 -0.314 -0.984 1.065 1.219 H11 ZBF 43 ZBF H12 H12 H 0 1 N N N -7.239 14.830 -0.817 0.088 3.485 0.714 H12 ZBF 44 ZBF H13 H13 H 0 1 N N N -6.227 16.930 0.877 -0.904 4.922 -1.506 H13 ZBF 45 ZBF H14 H14 H 0 1 N N N -7.853 16.360 1.384 -2.078 5.065 -0.175 H14 ZBF 46 ZBF H15 H15 H 0 1 N N N -9.309 17.472 -1.445 0.215 7.878 0.353 H15 ZBF 47 ZBF H16 H16 H 0 1 N N N -5.081 11.351 1.332 -1.380 -0.386 -1.284 H16 ZBF 48 ZBF H17 H17 H 0 1 N N N -3.730 10.075 -0.712 -3.982 -0.999 -1.626 H17 ZBF 49 ZBF H18 H18 H 0 1 N N N -2.914 10.959 0.622 -3.215 -2.241 -0.608 H18 ZBF 50 ZBF H19 H19 H 0 1 N N N -2.445 11.428 -2.341 -4.819 -1.739 1.215 H19 ZBF 51 ZBF H20 H20 H 0 1 N N N -1.440 10.384 -1.280 -5.586 -0.496 0.197 H20 ZBF 52 ZBF H21 H21 H 0 1 N N N -1.858 13.342 -0.738 -5.354 -3.445 -0.549 H21 ZBF 53 ZBF H22 H22 H 0 1 N N N 0.283 13.613 -1.710 -6.862 -1.212 -1.746 H22 ZBF 54 ZBF H23 H23 H 0 1 N N N 0.350 12.045 -2.161 -5.535 -1.965 -2.407 H23 ZBF 55 ZBF H25 H25 H 0 1 N N N -0.308 12.228 1.996 -7.875 -3.659 1.989 H25 ZBF 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZBF N2 C7 SING N N 1 ZBF C6 C7 SING N N 2 ZBF C6 C5 SING N N 3 ZBF O3 C4 DOUB N N 4 ZBF O5 C11 DOUB N N 5 ZBF C7 C8 SING N N 6 ZBF O4 C11 SING N N 7 ZBF C11 C10 SING N N 8 ZBF C4 C5 SING N N 9 ZBF C4 N1 SING N N 10 ZBF N3 C10 SING N N 11 ZBF N3 C9 SING N N 12 ZBF O2 C8 DOUB N N 13 ZBF C8 O1 SING N N 14 ZBF N1 C3 SING N N 15 ZBF C3 C9 SING N N 16 ZBF C3 C2 SING N N 17 ZBF C18 C17 DOUB Y N 18 ZBF C18 C19 SING Y N 19 ZBF C9 O6 DOUB N N 20 ZBF C17 C14 SING Y N 21 ZBF C19 C12 DOUB Y N 22 ZBF C1 C2 SING N N 23 ZBF C1 C SING N N 24 ZBF C14 C15 SING N N 25 ZBF C14 C13 DOUB Y N 26 ZBF C12 C13 SING Y N 27 ZBF C12 N SING N N 28 ZBF C N SING N N 29 ZBF C O7 DOUB N N 30 ZBF C15 C16 TRIP N N 31 ZBF N O SING N N 32 ZBF C19 H1 SING N N 33 ZBF C18 H2 SING N N 34 ZBF C17 H3 SING N N 35 ZBF C16 H4 SING N N 36 ZBF C13 H5 SING N N 37 ZBF O H6 SING N N 38 ZBF C1 H7 SING N N 39 ZBF C1 H8 SING N N 40 ZBF C2 H9 SING N N 41 ZBF C2 H10 SING N N 42 ZBF C3 H11 SING N N 43 ZBF N3 H12 SING N N 44 ZBF C10 H13 SING N N 45 ZBF C10 H14 SING N N 46 ZBF O4 H15 SING N N 47 ZBF N1 H16 SING N N 48 ZBF C5 H17 SING N N 49 ZBF C5 H18 SING N N 50 ZBF C6 H19 SING N N 51 ZBF C6 H20 SING N N 52 ZBF C7 H21 SING N N 53 ZBF N2 H22 SING N N 54 ZBF N2 H23 SING N N 55 ZBF O1 H25 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZBF SMILES ACDLabs 12.01 "O=C(O)C(N)CCC(=O)NC(C(=O)NCC(=O)O)CCC(=O)N(O)c1cc(C#C)ccc1" ZBF InChI InChI 1.03 "InChI=1S/C20H24N4O8/c1-2-12-4-3-5-13(10-12)24(32)17(26)9-7-15(19(29)22-11-18(27)28)23-16(25)8-6-14(21)20(30)31/h1,3-5,10,14-15,32H,6-9,11,21H2,(H,22,29)(H,23,25)(H,27,28)(H,30,31)/t14-,15-/m0/s1" ZBF InChIKey InChI 1.03 DNHXPPJCZZCCCC-GJZGRUSLSA-N ZBF SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CCC(=O)N(O)c1cccc(c1)C#C)C(=O)NCC(O)=O)C(O)=O" ZBF SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CCC(=O)N(O)c1cccc(c1)C#C)C(=O)NCC(O)=O)C(O)=O" ZBF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1cccc(c1)N(C(=O)CC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N)O" ZBF SMILES "OpenEye OEToolkits" 1.7.6 "C#Cc1cccc(c1)N(C(=O)CCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZBF "SYSTEMATIC NAME" ACDLabs 12.01 "L-gamma-glutamyl-N-(3-ethynylphenyl)-N-hydroxy-L-glutaminylglycine" ZBF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-5-[[(2S)-5-[(3-ethynylphenyl)-oxidanyl-amino]-1-(2-hydroxy-2-oxoethylamino)-1,5-bis(oxidanylidene)pentan-2-yl]amino]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZBF "Create component" 2014-05-19 PDBJ ZBF "Initial release" 2015-02-11 RCSB #