data_ZBL # _chem_comp.id ZBL _chem_comp.name "8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 Cl N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-08 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.944 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZBL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GEO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZBL C4 C1 C 0 1 N N N N N N 60.472 57.991 -34.654 1.400 0.923 -0.645 C4 ZBL 1 ZBL C14 C2 C 0 1 N N N N N N 63.458 58.441 -38.614 -3.025 -0.300 1.980 C14 ZBL 2 ZBL C5 C3 C 0 1 N N N N N N 61.468 58.222 -35.778 0.062 1.415 -1.209 C5 ZBL 3 ZBL C6 C4 C 0 1 N N N N N N 62.836 58.466 -35.206 -0.942 0.287 -1.100 C6 ZBL 4 ZBL C11 C5 C 0 1 Y N N N N N 65.360 55.194 -38.134 -4.846 -2.754 -0.224 C11 ZBL 5 ZBL C7 C6 C 0 1 N N N N N N 63.954 58.523 -35.944 -2.156 0.490 -0.573 C7 ZBL 6 ZBL C8 C7 C 0 1 Y N N N N N 64.449 57.326 -36.648 -3.107 -0.642 -0.485 C8 ZBL 7 ZBL C9 C8 C 0 1 Y N N N N N 65.157 56.303 -36.023 -3.561 -1.297 -1.626 C9 ZBL 8 ZBL C10 C9 C 0 1 Y N N N N N 65.611 55.235 -36.775 -4.437 -2.357 -1.486 C10 ZBL 9 ZBL C12 C10 C 0 1 Y N N N N N 64.670 56.203 -38.768 -4.391 -2.094 0.905 C12 ZBL 10 ZBL C13 C11 C 0 1 Y N N N N N 64.180 57.263 -38.007 -3.516 -1.028 0.768 C13 ZBL 11 ZBL N1 N1 N 0 1 N N N N N N 60.394 59.153 -33.763 1.785 -0.323 -1.319 N1 ZBL 12 ZBL N2 N2 N 0 1 Y N N N N N 65.453 60.233 -35.175 -2.170 2.856 -0.889 N2 ZBL 13 ZBL C3 C12 C 0 1 N N R N N N 59.288 59.045 -32.785 3.162 -0.703 -0.976 C3 ZBL 14 ZBL C1 C13 C 0 1 N N N N N N 58.867 61.005 -35.140 4.631 -1.180 2.395 C1 ZBL 15 ZBL C15 C14 C 0 1 N N N N N N 64.455 59.607 -38.801 -3.623 1.073 2.131 C15 ZBL 16 ZBL C16 C15 C 0 1 Y N N N N N 65.103 60.180 -37.557 -3.190 2.075 1.093 C16 ZBL 17 ZBL C17 C16 C 0 1 Y N N N N N 65.974 61.259 -37.687 -3.522 3.399 1.402 C17 ZBL 18 ZBL C18 C17 C 0 1 Y N N N N N 66.568 61.806 -36.565 -3.158 4.421 0.540 C18 ZBL 19 ZBL C19 C18 C 0 1 Y N N N N N 66.287 61.265 -35.325 -2.461 4.106 -0.619 C19 ZBL 20 ZBL C2 C19 C 0 1 N N S N N N 58.101 60.854 -33.832 4.606 -1.137 0.889 C2 ZBL 21 ZBL C20 C20 C 0 1 Y N N N N N 64.857 59.683 -36.258 -2.520 1.840 -0.090 C20 ZBL 22 ZBL C21 C21 C 0 1 N N N N N N 62.812 58.570 -33.709 -0.527 -1.079 -1.606 C21 ZBL 23 ZBL C22 C22 C 0 1 N N N N N N 61.719 59.518 -33.237 0.848 -1.412 -1.016 C22 ZBL 24 ZBL C23 C23 C 0 1 N N R N N N 59.477 59.748 -31.441 4.135 0.331 -1.551 C23 ZBL 25 ZBL C24 C24 C 0 1 N N S N N N 58.665 61.031 -31.400 5.563 -0.040 -1.138 C24 ZBL 26 ZBL C25 C25 C 0 1 N N S N N N 58.731 61.738 -32.746 5.636 -0.121 0.389 C25 ZBL 27 ZBL O1 O1 O 0 1 N N N N N N 59.801 61.770 -35.202 5.727 -1.618 3.035 O1 ZBL 28 ZBL O2 O2 O 0 1 N N N N N N 58.542 60.355 -36.102 3.665 -0.821 3.026 O2 ZBL 29 ZBL O3 O3 O 0 1 N N N N N N 58.073 59.485 -33.406 3.304 -0.751 0.445 O3 ZBL 30 ZBL O4 O4 O 0 1 N N N N N N 67.416 62.864 -36.708 -3.478 5.711 0.824 O4 ZBL 31 ZBL O5 O5 O 0 1 N N N N N N 59.049 58.892 -30.381 4.036 0.339 -2.976 O5 ZBL 32 ZBL O6 O6 O 0 1 N N N N N N 59.126 61.878 -30.347 6.470 0.960 -1.608 O6 ZBL 33 ZBL O7 O7 O 0 1 N N N N N N 58.055 62.998 -32.700 6.946 -0.537 0.783 O7 ZBL 34 ZBL CL1 CL1 CL 0 0 N N N N N N 65.953 53.823 -39.029 -5.942 -4.090 -0.056 CL1 ZBL 35 ZBL H1 H1 H 0 1 N N N N N N 59.479 57.805 -35.088 2.166 1.680 -0.814 H1 ZBL 36 ZBL H2 H2 H 0 1 N N N N N N 60.787 57.113 -34.071 1.298 0.742 0.425 H2 ZBL 37 ZBL H3 H3 H 0 1 N N N N N N 62.643 58.757 -37.946 -3.270 -0.888 2.865 H3 ZBL 38 ZBL H11 H4 H 0 1 N N N N N N 63.041 58.153 -39.590 -1.941 -0.202 1.915 H11 ZBL 39 ZBL H4 H5 H 0 1 N N N N N N 61.157 59.098 -36.367 -0.286 2.274 -0.635 H4 ZBL 40 ZBL H5 H6 H 0 1 N N N N N N 61.497 57.335 -36.428 0.185 1.697 -2.255 H5 ZBL 41 ZBL H8 H9 H 0 1 N N N N N N 65.350 56.343 -34.961 -3.234 -0.981 -2.606 H8 ZBL 42 ZBL H9 H10 H 0 1 N N N N N N 66.160 54.435 -36.302 -4.802 -2.876 -2.361 H9 ZBL 43 ZBL H10 H11 H 0 1 N N N N N N 64.511 56.174 -39.836 -4.714 -2.409 1.886 H10 ZBL 44 ZBL H14 H13 H 0 1 N N N N N N 59.170 57.975 -32.557 3.384 -1.684 -1.397 H14 ZBL 45 ZBL H15 H14 H 0 1 N N N N N N 65.262 59.249 -39.457 -4.709 0.981 2.088 H15 ZBL 46 ZBL H12 H15 H 0 1 N N N N N N 63.915 60.426 -39.298 -3.354 1.459 3.114 H12 ZBL 47 ZBL H16 H16 H 0 1 N N N N N N 66.185 61.668 -38.664 -4.061 3.624 2.311 H16 ZBL 48 ZBL H17 H17 H 0 1 N N N N N N 66.756 61.690 -34.450 -2.159 4.890 -1.298 H17 ZBL 49 ZBL H18 H18 H 0 1 N N N N N N 57.071 61.203 -33.997 4.846 -2.124 0.493 H18 ZBL 50 ZBL H19 H19 H 0 1 N N N N N N 62.629 57.572 -33.284 -1.255 -1.826 -1.287 H19 ZBL 51 ZBL H20 H20 H 0 1 N N N N N N 63.786 58.944 -33.360 -0.467 -1.065 -2.694 H20 ZBL 52 ZBL H21 H21 H 0 1 N N N N N N 61.965 60.536 -33.574 1.216 -2.340 -1.454 H21 ZBL 53 ZBL H22 H22 H 0 1 N N N N N N 61.681 59.495 -32.138 0.762 -1.528 0.064 H22 ZBL 54 ZBL H23 H23 H 0 1 N N N N N N 60.542 59.997 -31.319 3.888 1.319 -1.162 H23 ZBL 55 ZBL H24 H24 H 0 1 N N N N N N 57.615 60.761 -31.211 5.828 -1.005 -1.570 H24 ZBL 56 ZBL H25 H25 H 0 1 N N N N N N 59.789 61.896 -33.003 5.420 0.857 0.818 H25 ZBL 57 ZBL H26 H26 H 0 1 N N N N N N 60.174 61.745 -36.075 5.695 -1.627 4.002 H26 ZBL 58 ZBL H27 H27 H 0 1 N N N N N N 67.742 63.127 -35.855 -2.806 6.178 1.340 H27 ZBL 59 ZBL H28 H28 H 0 1 N N N N N N 59.169 59.334 -29.549 4.626 0.972 -3.408 H28 ZBL 60 ZBL H29 H29 H 0 1 N N N N N N 59.074 61.413 -29.520 7.394 0.789 -1.382 H29 ZBL 61 ZBL H30 H30 H 0 1 N N N N N N 58.446 63.543 -32.028 7.063 -0.615 1.740 H30 ZBL 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZBL CL1 C11 SING N N 1 ZBL C15 C14 SING N N 2 ZBL C15 C16 SING N N 3 ZBL C12 C11 DOUB Y N 4 ZBL C12 C13 SING Y N 5 ZBL C14 C13 SING N N 6 ZBL C11 C10 SING Y N 7 ZBL C13 C8 DOUB Y N 8 ZBL C17 C16 DOUB Y N 9 ZBL C17 C18 SING Y N 10 ZBL C16 C20 SING Y N 11 ZBL C10 C9 DOUB Y N 12 ZBL O4 C18 SING N N 13 ZBL C8 C9 SING Y N 14 ZBL C8 C7 SING N N 15 ZBL C18 C19 DOUB Y N 16 ZBL C20 C7 SING N N 17 ZBL C20 N2 DOUB Y N 18 ZBL O2 C1 DOUB N N 19 ZBL C7 C6 DOUB N N 20 ZBL C5 C6 SING N N 21 ZBL C5 C4 SING N N 22 ZBL C19 N2 SING Y N 23 ZBL C6 C21 SING N N 24 ZBL O1 C1 SING N N 25 ZBL C1 C2 SING N N 26 ZBL C4 N1 SING N N 27 ZBL C2 O3 SING N N 28 ZBL C2 C25 SING N N 29 ZBL N1 C22 SING N N 30 ZBL N1 C3 SING N N 31 ZBL C21 C22 SING N N 32 ZBL O3 C3 SING N N 33 ZBL C3 C23 SING N N 34 ZBL C25 O7 SING N N 35 ZBL C25 C24 SING N N 36 ZBL C23 C24 SING N N 37 ZBL C23 O5 SING N N 38 ZBL C24 O6 SING N N 39 ZBL C4 H1 SING N N 40 ZBL C4 H2 SING N N 41 ZBL C14 H3 SING N N 42 ZBL C14 H11 SING N N 43 ZBL C5 H4 SING N N 44 ZBL C5 H5 SING N N 45 ZBL C9 H8 SING N N 46 ZBL C10 H9 SING N N 47 ZBL C12 H10 SING N N 48 ZBL C3 H14 SING N N 49 ZBL C15 H15 SING N N 50 ZBL C15 H12 SING N N 51 ZBL C17 H16 SING N N 52 ZBL C19 H17 SING N N 53 ZBL C2 H18 SING N N 54 ZBL C21 H19 SING N N 55 ZBL C21 H20 SING N N 56 ZBL C22 H21 SING N N 57 ZBL C22 H22 SING N N 58 ZBL C23 H23 SING N N 59 ZBL C24 H24 SING N N 60 ZBL C25 H25 SING N N 61 ZBL O1 H26 SING N N 62 ZBL O4 H27 SING N N 63 ZBL O5 H28 SING N N 64 ZBL O6 H29 SING N N 65 ZBL O7 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZBL SMILES ACDLabs 12.01 "Clc1cc2CCc3cc(O)cnc3C(\c2cc1)=C1/CCN(CC1)C1OC(C(O)C(O)C1O)C(=O)O" ZBL InChI InChI 1.06 "InChI=1S/C25H27ClN2O7/c26-15-3-4-17-13(9-15)1-2-14-10-16(29)11-27-19(14)18(17)12-5-7-28(8-6-12)24-22(32)20(30)21(31)23(35-24)25(33)34/h3-4,9-11,20-24,29-32H,1-2,5-8H2,(H,33,34)/t20-,21-,22+,23-,24+/m0/s1" ZBL InChIKey InChI 1.06 ABXRQJRQHLGUBH-OSFFKXSWSA-N ZBL SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)N2CC\C(CC2)=C3/c4ccc(Cl)cc4CCc5cc(O)cnc35" ZBL SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)N2CCC(CC2)=C3c4ccc(Cl)cc4CCc5cc(O)cnc35" ZBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CCc3cc(cnc3C2=C4CCN(CC4)[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)C(=O)O)O)O)O)O" ZBL SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CCc3cc(cnc3C2=C4CCN(CC4)C5C(C(C(C(O5)C(=O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZBL "SYSTEMATIC NAME" ACDLabs 12.01 "8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine" ZBL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R},6~{R})-6-[4-(13-chloranyl-6-oxidanyl-4-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3,5,7,12,14-hexaen-2-ylidene)piperidin-1-yl]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZBL "Create component" 2023-03-08 RCSB ZBL "Initial release" 2024-03-20 RCSB #