data_ZD0 # _chem_comp.id ZD0 _chem_comp.name "methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-alpha-D-mannopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H21 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 279.287 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F4Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZD0 C1 C1 C 0 1 N N S 41.815 36.627 -7.793 3.536 -0.169 -0.038 C1 ZD0 1 ZD0 C1M C1M C 0 1 N N N 43.948 36.935 -6.970 4.494 0.729 -2.044 C1M ZD0 2 ZD0 C2 C2 C 0 1 N N S 41.634 35.780 -6.538 2.777 -1.389 0.490 C2 ZD0 3 ZD0 C3 C3 C 0 1 N N S 42.959 35.165 -6.084 1.347 -1.367 -0.058 C3 ZD0 4 ZD0 C4 C4 C 0 1 N N S 43.639 34.575 -7.300 0.679 -0.048 0.343 C4 ZD0 5 ZD0 C5 C5 C 0 1 N N R 43.762 35.574 -8.453 1.519 1.120 -0.179 C5 ZD0 6 ZD0 C6 C6 C 0 1 N N N 44.711 34.971 -9.495 0.891 2.442 0.268 C6 ZD0 7 ZD0 C7 C7 C 0 1 N N N 45.135 32.778 -7.407 -1.613 0.780 0.342 C7 ZD0 8 ZD0 C8 C8 C 0 1 N N R 46.219 31.834 -6.883 -2.995 0.847 -0.254 C8 ZD0 9 ZD0 C9 C9 C 0 1 N N N 47.636 32.413 -6.932 -3.658 -0.529 -0.160 C9 ZD0 10 ZD0 C10 C10 C 0 1 N N N 48.452 31.625 -5.946 -5.010 -0.494 -0.875 C10 ZD0 11 ZD0 N4 N4 N 0 1 N N N 45.009 34.058 -6.998 -0.665 0.017 -0.237 N4 ZD0 12 ZD0 O1 O1 O 0 1 N N N 42.746 37.604 -7.384 3.617 -0.238 -1.463 O1 ZD0 13 ZD0 O2 O2 O 0 1 N N N 40.695 34.754 -6.771 2.742 -1.348 1.918 O2 ZD0 14 ZD0 O3 O3 O 0 1 N N N 42.917 34.020 -5.211 0.608 -2.461 0.489 O3 ZD0 15 ZD0 O5 O5 O 0 1 N N N 42.420 35.933 -8.915 2.846 1.022 0.343 O5 ZD0 16 ZD0 O7 O7 O 0 1 N N N 44.287 32.379 -8.205 -1.353 1.414 1.343 O7 ZD0 17 ZD0 O8 O8 O 0 1 N N N 45.955 31.374 -5.588 -3.778 1.803 0.463 O8 ZD0 18 ZD0 O10 O10 O 0 1 N N N 48.192 30.226 -6.116 -5.629 -1.779 -0.787 O10 ZD0 19 ZD0 H101 H101 H 0 0 N N N 49.521 31.822 -6.115 -5.651 0.251 -0.405 H101 ZD0 20 ZD0 H102 H102 H 0 0 N N N 48.181 31.926 -4.923 -4.859 -0.235 -1.923 H102 ZD0 21 ZD0 H10O H10O H 0 0 N N N 48.708 29.729 -5.492 -6.492 -1.831 -1.220 H10O ZD0 22 ZD0 H1 H1 H 0 1 N N N 40.854 37.079 -8.082 4.542 -0.157 0.382 H1 ZD0 23 ZD0 H1M1 H1M1 H 0 0 N N N 44.690 37.680 -6.646 4.499 0.611 -3.127 H1M1 ZD0 24 ZD0 H1M2 H1M2 H 0 0 N N N 43.721 36.257 -6.134 4.150 1.731 -1.789 H1M2 ZD0 25 ZD0 H1M3 H1M3 H 0 0 N N N 44.354 36.356 -7.812 5.503 0.582 -1.657 H1M3 ZD0 26 ZD0 H2 H2 H 0 1 N N N 41.271 36.436 -5.733 3.279 -2.300 0.164 H2 ZD0 27 ZD0 HO2 HO2 H 0 1 N Y N 40.591 34.234 -5.983 3.616 -1.355 2.333 HO2 ZD0 28 ZD0 H3 H3 H 0 1 N N N 43.596 35.953 -5.655 1.371 -1.449 -1.144 H3 ZD0 29 ZD0 HO3 HO3 H 0 1 N Y N 43.803 33.742 -5.009 0.980 -3.329 0.280 HO3 ZD0 30 ZD0 H4 H4 H 0 1 N N N 43.027 33.732 -7.653 0.610 0.011 1.429 H4 ZD0 31 ZD0 H4N H4N H 0 1 N N N 45.732 34.587 -6.554 -0.873 -0.490 -1.037 H4N ZD0 32 ZD0 H5 H5 H 0 1 N N N 44.243 36.480 -8.055 1.554 1.085 -1.268 H5 ZD0 33 ZD0 H61 H61 H 0 1 N N N 44.820 35.668 -10.339 0.857 2.477 1.357 H61 ZD0 34 ZD0 H62 H62 H 0 1 N N N 45.695 34.794 -9.036 1.490 3.273 -0.104 H62 ZD0 35 ZD0 H63 H63 H 0 1 N N N 44.299 34.018 -9.858 -0.121 2.516 -0.130 H63 ZD0 36 ZD0 H8 H8 H 0 1 N N N 46.220 30.963 -7.555 -2.926 1.145 -1.300 H8 ZD0 37 ZD0 H8O H8O H 0 1 N N N 46.654 30.794 -5.309 -3.882 1.600 1.403 H8O ZD0 38 ZD0 H91 H91 H 0 1 N N N 48.055 32.307 -7.943 -3.017 -1.274 -0.631 H91 ZD0 39 ZD0 H92 H92 H 0 1 N N N 47.622 33.476 -6.650 -3.808 -0.789 0.888 H92 ZD0 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZD0 C1 O1 SING N N 1 ZD0 C1 O5 SING N N 2 ZD0 C1 C2 SING N N 3 ZD0 O1 C1M SING N N 4 ZD0 C1 H1 SING N N 5 ZD0 C1M H1M1 SING N N 6 ZD0 C1M H1M2 SING N N 7 ZD0 C1M H1M3 SING N N 8 ZD0 C2 O2 SING N N 9 ZD0 C2 H2 SING N N 10 ZD0 O2 HO2 SING N N 11 ZD0 C2 C3 SING N N 12 ZD0 C3 O3 SING N N 13 ZD0 C3 H3 SING N N 14 ZD0 O3 HO3 SING N N 15 ZD0 C3 C4 SING N N 16 ZD0 C4 H4 SING N N 17 ZD0 C4 N4 SING N N 18 ZD0 N4 H4N SING N N 19 ZD0 C4 C5 SING N N 20 ZD0 C5 O5 SING N N 21 ZD0 C5 C6 SING N N 22 ZD0 C5 H5 SING N N 23 ZD0 C6 H61 SING N N 24 ZD0 C6 H62 SING N N 25 ZD0 C6 H63 SING N N 26 ZD0 N4 C7 SING N N 27 ZD0 C7 O7 DOUB N N 28 ZD0 C7 C8 SING N N 29 ZD0 C8 H8 SING N N 30 ZD0 C8 O8 SING N N 31 ZD0 O8 H8O SING N N 32 ZD0 C8 C9 SING N N 33 ZD0 C9 H91 SING N N 34 ZD0 C9 H92 SING N N 35 ZD0 C9 C10 SING N N 36 ZD0 C10 H101 SING N N 37 ZD0 C10 H102 SING N N 38 ZD0 C10 O10 SING N N 39 ZD0 O10 H10O SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZD0 SMILES ACDLabs 12.01 "O=C(NC1C(OC(OC)C(O)C1O)C)C(O)CCO" ZD0 InChI InChI 1.03 "InChI=1S/C11H21NO7/c1-5-7(12-10(17)6(14)3-4-13)8(15)9(16)11(18-2)19-5/h5-9,11,13-16H,3-4H2,1-2H3,(H,12,17)/t5-,6-,7-,8+,9+,11+/m1/s1" ZD0 InChIKey InChI 1.03 ASFHRCHAPWVLRF-CWJAVHARSA-N ZD0 SMILES_CANONICAL CACTVS 3.370 "CO[C@H]1O[C@H](C)[C@@H](NC(=O)[C@H](O)CCO)[C@H](O)[C@@H]1O" ZD0 SMILES CACTVS 3.370 "CO[CH]1O[CH](C)[CH](NC(=O)[CH](O)CCO)[CH](O)[CH]1O" ZD0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OC)O)O)NC(=O)[C@@H](CCO)O" ZD0 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)OC)O)O)NC(=O)C(CCO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZD0 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-alpha-D-mannopyranoside" ZD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-N-[(2R,3S,4S,5S,6S)-6-methoxy-2-methyl-4,5-bis(oxidanyl)oxan-3-yl]-2,4-bis(oxidanyl)butanamide" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ZD0 "CARBOHYDRATE ISOMER" D PDB ? ZD0 "CARBOHYDRATE RING" pyranose PDB ? ZD0 "CARBOHYDRATE ANOMER" alpha PDB ? ZD0 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZD0 "Create component" 2012-12-17 RCSB ZD0 "Modify atom id" 2013-01-02 RCSB ZD0 "Modify atom id" 2020-05-09 RCSB ZD0 "Modify component atom id" 2020-07-17 RCSB ZD0 "Initial release" 2020-07-29 RCSB ##