data_ZD1 # _chem_comp.id ZD1 _chem_comp.name "(1R,4S,5S,6R)-4-amino-5,6-dihydroxy-2-(hydroxymethyl)cyclohex-2-en-1-yl alpha-D-glucopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H23 N O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-14 _chem_comp.pdbx_modified_date 2021-07-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZD1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MGY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZD1 C02 C1 C 0 1 N N S 23.602 -29.967 278.093 4.017 -0.602 0.381 C02 ZD1 1 ZD1 C03 C2 C 0 1 N N N 24.962 -30.316 277.555 2.885 -1.558 0.620 C03 ZD1 2 ZD1 C04 C3 C 0 1 N N N 25.261 -30.496 276.264 1.664 -1.343 0.247 C04 ZD1 3 ZD1 C05 C4 C 0 1 N N N 26.700 -30.507 275.756 0.633 -2.394 0.568 C05 ZD1 4 ZD1 C07 C5 C 0 1 N N R 24.232 -30.392 275.170 1.212 -0.113 -0.484 C07 ZD1 5 ZD1 C09 C6 C 0 1 N N S 23.765 -31.525 273.073 -0.924 0.893 -0.899 C09 ZD1 6 ZD1 C10 C7 C 0 1 N N R 23.225 -32.867 272.512 -1.767 1.987 -0.240 C10 ZD1 7 ZD1 C12 C8 C 0 1 N N S 24.376 -33.924 272.381 -2.614 1.366 0.875 C12 ZD1 8 ZD1 C14 C9 C 0 1 N N S 25.530 -33.335 271.512 -3.475 0.246 0.284 C14 ZD1 9 ZD1 C16 C10 C 0 1 N N R 26.011 -32.047 272.264 -2.565 -0.781 -0.395 C16 ZD1 10 ZD1 C17 C11 C 0 1 N N N 27.211 -31.322 271.504 -3.421 -1.873 -1.040 C17 ZD1 11 ZD1 C20 C12 C 0 1 N N R 22.795 -29.946 275.693 2.257 0.996 -0.347 C20 ZD1 12 ZD1 C22 C13 C 0 1 N N S 22.519 -30.454 277.106 3.629 0.412 -0.697 C22 ZD1 13 ZD1 N01 N1 N 0 1 N N N 23.470 -30.629 279.383 4.327 0.108 1.629 N01 ZD1 14 ZD1 O06 O1 O 0 1 N N N 26.999 -29.258 275.183 1.277 -3.538 1.133 O06 ZD1 15 ZD1 O08 O2 O 0 1 N N N 24.079 -31.639 274.471 -0.029 0.335 0.065 O08 ZD1 16 ZD1 O11 O3 O 0 1 N N N 22.279 -33.345 273.446 -0.907 2.985 0.313 O11 ZD1 17 ZD1 O13 O4 O 0 1 N N N 23.880 -35.047 271.691 -3.457 2.368 1.449 O13 ZD1 18 ZD1 O15 O5 O 0 1 N N N 26.576 -34.298 271.482 -4.215 -0.389 1.329 O15 ZD1 19 ZD1 O18 O6 O 0 1 N N N 26.668 -30.754 270.319 -2.576 -2.923 -1.516 O18 ZD1 20 ZD1 O19 O7 O 0 1 N N N 24.918 -31.124 272.369 -1.783 -0.133 -1.400 O19 ZD1 21 ZD1 O21 O8 O 0 1 N N N 22.850 -28.550 275.837 1.946 2.063 -1.243 O21 ZD1 22 ZD1 O23 O9 O 0 1 N N N 22.481 -31.858 277.006 4.600 1.459 -0.739 O23 ZD1 23 ZD1 H1 H1 H 0 1 N N N 23.519 -28.877 278.212 4.896 -1.158 0.054 H1 ZD1 24 ZD1 H2 H2 H 0 1 N N N 25.763 -30.431 278.270 3.103 -2.482 1.134 H2 ZD1 25 ZD1 H3 H3 H 0 1 N N N 26.817 -31.296 274.999 -0.085 -1.992 1.283 H3 ZD1 26 ZD1 H4 H4 H 0 1 N N N 27.385 -30.700 276.595 0.113 -2.684 -0.345 H4 ZD1 27 ZD1 H5 H5 H 0 1 N N N 24.568 -29.623 274.458 1.073 -0.350 -1.539 H5 ZD1 28 ZD1 H6 H6 H 0 1 N N N 22.976 -30.769 272.943 -0.351 1.321 -1.722 H6 ZD1 29 ZD1 H7 H7 H 0 1 N N N 22.770 -32.698 271.525 -2.421 2.441 -0.985 H7 ZD1 30 ZD1 H8 H8 H 0 1 N N N 24.756 -34.186 273.380 -1.959 0.956 1.645 H8 ZD1 31 ZD1 H9 H9 H 0 1 N N N 25.163 -33.078 270.507 -4.163 0.664 -0.450 H9 ZD1 32 ZD1 H10 H10 H 0 1 N N N 26.363 -32.337 273.265 -1.904 -1.229 0.347 H10 ZD1 33 ZD1 H11 H11 H 0 1 N N N 27.993 -32.052 271.249 -4.116 -2.273 -0.302 H11 ZD1 34 ZD1 H12 H12 H 0 1 N N N 27.639 -30.533 272.140 -3.981 -1.451 -1.875 H12 ZD1 35 ZD1 H13 H13 H 0 1 N N N 22.015 -30.278 274.992 2.265 1.368 0.678 H13 ZD1 36 ZD1 H14 H14 H 0 1 N N N 21.544 -30.067 277.437 3.579 -0.085 -1.666 H14 ZD1 37 ZD1 H15 H15 H 0 1 N N N 24.181 -30.297 280.003 4.591 -0.539 2.357 H15 ZD1 38 ZD1 H16 H16 H 0 1 N N N 22.570 -30.428 279.770 5.045 0.801 1.482 H16 ZD1 39 ZD1 H18 H18 H 0 1 N N N 27.894 -29.261 274.865 0.695 -4.301 1.247 H18 ZD1 40 ZD1 H19 H19 H 0 1 N N N 21.575 -32.714 273.536 -0.337 3.418 -0.338 H19 ZD1 41 ZD1 H20 H20 H 0 1 N N N 23.172 -35.438 272.189 -2.977 3.112 1.837 H20 ZD1 42 ZD1 H21 H21 H 0 1 N N N 26.278 -35.076 271.025 -4.814 0.205 1.803 H21 ZD1 43 ZD1 H22 H22 H 0 1 N N N 27.355 -30.311 269.836 -3.044 -3.615 -2.003 H22 ZD1 44 ZD1 H23 H23 H 0 1 N N N 22.012 -28.230 276.149 2.569 2.802 -1.208 H23 ZD1 45 ZD1 H24 H24 H 0 1 N N N 22.311 -32.232 277.862 5.493 1.159 -0.956 H24 ZD1 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZD1 O18 C17 SING N N 1 ZD1 O15 C14 SING N N 2 ZD1 C17 C16 SING N N 3 ZD1 C14 C16 SING N N 4 ZD1 C14 C12 SING N N 5 ZD1 O13 C12 SING N N 6 ZD1 C16 O19 SING N N 7 ZD1 O19 C09 SING N N 8 ZD1 C12 C10 SING N N 9 ZD1 C10 C09 SING N N 10 ZD1 C10 O11 SING N N 11 ZD1 C09 O08 SING N N 12 ZD1 O08 C07 SING N N 13 ZD1 C07 C20 SING N N 14 ZD1 C07 C04 SING N N 15 ZD1 O06 C05 SING N N 16 ZD1 C20 O21 SING N N 17 ZD1 C20 C22 SING N N 18 ZD1 C05 C04 SING N N 19 ZD1 C04 C03 DOUB N N 20 ZD1 O23 C22 SING N N 21 ZD1 C22 C02 SING N N 22 ZD1 C03 C02 SING N N 23 ZD1 C02 N01 SING N N 24 ZD1 C02 H1 SING N N 25 ZD1 C03 H2 SING N N 26 ZD1 C05 H3 SING N N 27 ZD1 C05 H4 SING N N 28 ZD1 C07 H5 SING N N 29 ZD1 C09 H6 SING N N 30 ZD1 C10 H7 SING N N 31 ZD1 C12 H8 SING N N 32 ZD1 C14 H9 SING N N 33 ZD1 C16 H10 SING N N 34 ZD1 C17 H11 SING N N 35 ZD1 C17 H12 SING N N 36 ZD1 C20 H13 SING N N 37 ZD1 C22 H14 SING N N 38 ZD1 N01 H15 SING N N 39 ZD1 N01 H16 SING N N 40 ZD1 O06 H18 SING N N 41 ZD1 O11 H19 SING N N 42 ZD1 O13 H20 SING N N 43 ZD1 O15 H21 SING N N 44 ZD1 O18 H22 SING N N 45 ZD1 O21 H23 SING N N 46 ZD1 O23 H24 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZD1 SMILES ACDLabs 12.01 "OCC1=CC(N)C(O)C(O)C1OC1OC(CO)C(O)C(O)C1O" ZD1 InChI InChI 1.03 "InChI=1S/C13H23NO9/c14-5-1-4(2-15)12(10(20)7(5)17)23-13-11(21)9(19)8(18)6(3-16)22-13/h1,5-13,15-21H,2-3,14H2/t5-,6+,7-,8+,9-,10+,11+,12+,13+/m0/s1" ZD1 InChIKey InChI 1.03 UINFOZNGFLXUEC-QHWKHWDXSA-N ZD1 SMILES_CANONICAL CACTVS 3.385 "N[C@H]1C=C(CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O" ZD1 SMILES CACTVS 3.385 "N[CH]1C=C(CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O" ZD1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C([C@H]([C@@H]([C@H]([C@H]1N)O)O)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CO" ZD1 SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(C(C(C(C1N)O)O)OC2C(C(C(C(O2)CO)O)O)O)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZD1 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,4S,5S,6R)-4-amino-5,6-dihydroxy-2-(hydroxymethyl)cyclohex-2-en-1-yl alpha-D-glucopyranoside" ZD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(1~{R},4~{S},5~{S},6~{R})-4-azanyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)cyclohex-2-en-1-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZD1 "Create component" 2021-04-14 RCSB ZD1 "Initial release" 2021-07-14 RCSB ##