data_ZD4 # _chem_comp.id ZD4 _chem_comp.name "2-chloroadenosine 5'-(trihydrogen diphosphate)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 Cl N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-14 _chem_comp.pdbx_modified_date 2021-12-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZD4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZD4 "C1'" C1 C 0 1 N N R 38.324 35.925 21.266 1.656 0.875 0.249 "C1'" ZD4 1 ZD4 C2 C2 C 0 1 Y N N 34.257 35.625 19.843 5.927 -0.463 0.597 C2 ZD4 2 ZD4 "C2'" C3 C 0 1 N N R 39.670 35.737 21.883 1.797 2.006 -0.802 "C2'" ZD4 3 ZD4 "C3'" C4 C 0 1 N N S 40.486 34.994 20.898 0.540 2.865 -0.524 "C3'" ZD4 4 ZD4 C4 C5 C 0 1 Y N N 36.193 34.929 20.803 3.709 -0.585 0.003 C4 ZD4 5 ZD4 "C4'" C6 C 0 1 N N R 40.021 35.539 19.575 -0.416 1.908 0.214 "C4'" ZD4 6 ZD4 C5 C7 C 0 1 Y N N 35.618 33.616 20.954 3.945 -1.843 -0.576 C5 ZD4 7 ZD4 "C5'" C8 C 0 1 N N N 39.971 34.531 18.483 -1.728 1.781 -0.563 "C5'" ZD4 8 ZD4 C6 C9 C 0 1 Y N N 34.310 33.449 20.507 5.249 -2.363 -0.527 C6 ZD4 9 ZD4 C8 C10 C 0 1 Y N N 37.719 33.608 21.749 1.842 -1.389 -0.851 C8 ZD4 10 ZD4 N1 N1 N 0 1 Y N N 33.668 34.462 19.953 6.197 -1.643 0.065 N1 ZD4 11 ZD4 N3 N2 N 0 1 Y N N 35.446 35.872 20.274 4.720 0.064 0.573 N3 ZD4 12 ZD4 N6 N3 N 0 1 N N N 33.689 32.164 20.611 5.541 -3.597 -1.081 N6 ZD4 13 ZD4 N7 N4 N 0 1 Y N N 36.641 32.813 21.591 2.764 -2.278 -1.079 N7 ZD4 14 ZD4 N9 N5 N 0 1 Y N N 37.413 34.830 21.317 2.375 -0.325 -0.185 N9 ZD4 15 ZD4 O1A O1 O 0 1 N N N 39.539 35.317 14.795 -4.049 0.016 -1.688 O1A ZD4 16 ZD4 O1B O2 O 0 1 N N N 43.767 33.827 14.859 -6.029 -2.460 1.793 O1B ZD4 17 ZD4 "O2'" O3 O 0 1 N N N 40.300 37.023 22.060 2.990 2.761 -0.581 "O2'" ZD4 18 ZD4 O2A O4 O 0 1 N N N 39.112 33.143 15.862 -4.998 1.979 -0.417 O2A ZD4 19 ZD4 O2B O5 O 0 1 N N N 43.322 35.448 16.550 -7.447 -0.602 0.589 O2B ZD4 20 ZD4 "O3'" O6 O 0 1 N N N 41.888 35.231 21.067 0.870 3.981 0.305 "O3'" ZD4 21 ZD4 O3A O7 O 0 1 N N N 41.434 33.936 15.821 -4.827 -0.406 0.676 O3A ZD4 22 ZD4 O3B O8 O 0 1 N N N 42.417 35.816 14.366 -5.967 -2.177 -0.715 O3B ZD4 23 ZD4 "O4'" O9 O 0 1 N N N 38.657 36.085 19.820 0.234 0.628 0.289 "O4'" ZD4 24 ZD4 "O5'" O10 O 0 1 N N N 39.723 35.200 17.270 -2.644 0.972 0.178 "O5'" ZD4 25 ZD4 PA P1 P 0 1 N N N 39.911 34.382 15.869 -4.128 0.627 -0.342 PA ZD4 26 ZD4 PB P2 P 0 1 N N N 42.761 34.786 15.356 -6.065 -1.428 0.558 PB ZD4 27 ZD4 CL6 CL1 CL 0 0 N N N 33.416 36.992 19.132 7.211 0.422 1.361 CL6 ZD4 28 ZD4 "H1'" H1 H 0 1 N N N 37.858 36.845 21.650 2.018 1.207 1.222 "H1'" ZD4 29 ZD4 "H2'" H2 H 0 1 N N N 39.594 35.186 22.832 1.777 1.601 -1.814 "H2'" ZD4 30 ZD4 "H3'" H3 H 0 1 N N N 40.262 33.919 20.956 0.095 3.204 -1.460 "H3'" ZD4 31 ZD4 "H4'" H4 H 0 1 N N N 40.688 36.361 19.275 -0.613 2.283 1.219 "H4'" ZD4 32 ZD4 "H5'2" H5 H 0 0 N N N 39.165 33.809 18.681 -2.158 2.771 -0.715 "H5'2" ZD4 33 ZD4 "H5'1" H6 H 0 0 N N N 40.932 34.000 18.424 -1.534 1.317 -1.530 "H5'1" ZD4 34 ZD4 H8 H7 H 0 1 N N N 38.671 33.304 22.158 0.807 -1.480 -1.145 H8 ZD4 35 ZD4 HN61 H8 H 0 0 N N N 32.771 32.204 20.217 4.841 -4.113 -1.511 HN61 ZD4 36 ZD4 HN62 H9 H 0 0 N N N 34.235 31.489 20.115 6.445 -3.945 -1.041 HN62 ZD4 37 ZD4 H1 H10 H 0 1 N N N 44.013 34.057 13.971 -6.748 -3.107 1.786 H1 ZD4 38 ZD4 "HO2'" H11 H 0 0 N N N 39.805 37.535 22.689 3.123 3.480 -1.213 "HO2'" ZD4 39 ZD4 H2 H12 H 0 1 N N N 38.486 33.173 15.148 -5.092 2.434 0.431 H2 ZD4 40 ZD4 H3 H13 H 0 1 N N N 43.336 36.388 16.414 -7.579 -0.086 1.396 H3 ZD4 41 ZD4 H4 H14 H 0 1 N N N 42.170 34.883 21.905 1.514 4.586 -0.088 H4 ZD4 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZD4 O3B PB DOUB N N 1 ZD4 O1A PA DOUB N N 2 ZD4 O1B PB SING N N 3 ZD4 PB O3A SING N N 4 ZD4 PB O2B SING N N 5 ZD4 O3A PA SING N N 6 ZD4 O2A PA SING N N 7 ZD4 PA "O5'" SING N N 8 ZD4 "O5'" "C5'" SING N N 9 ZD4 "C5'" "C4'" SING N N 10 ZD4 CL6 C2 SING N N 11 ZD4 "C4'" "O4'" SING N N 12 ZD4 "C4'" "C3'" SING N N 13 ZD4 "O4'" "C1'" SING N N 14 ZD4 C2 N1 DOUB Y N 15 ZD4 C2 N3 SING Y N 16 ZD4 N1 C6 SING Y N 17 ZD4 N3 C4 DOUB Y N 18 ZD4 C6 N6 SING N N 19 ZD4 C6 C5 DOUB Y N 20 ZD4 C4 C5 SING Y N 21 ZD4 C4 N9 SING Y N 22 ZD4 "C3'" "O3'" SING N N 23 ZD4 "C3'" "C2'" SING N N 24 ZD4 C5 N7 SING Y N 25 ZD4 "C1'" N9 SING N N 26 ZD4 "C1'" "C2'" SING N N 27 ZD4 N9 C8 SING Y N 28 ZD4 N7 C8 DOUB Y N 29 ZD4 "C2'" "O2'" SING N N 30 ZD4 "C1'" "H1'" SING N N 31 ZD4 "C2'" "H2'" SING N N 32 ZD4 "C3'" "H3'" SING N N 33 ZD4 "C4'" "H4'" SING N N 34 ZD4 "C5'" "H5'2" SING N N 35 ZD4 "C5'" "H5'1" SING N N 36 ZD4 C8 H8 SING N N 37 ZD4 N6 HN61 SING N N 38 ZD4 N6 HN62 SING N N 39 ZD4 O1B H1 SING N N 40 ZD4 "O2'" "HO2'" SING N N 41 ZD4 O2A H2 SING N N 42 ZD4 O2B H3 SING N N 43 ZD4 "O3'" H4 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZD4 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)nc(Cl)nc32)C(O)C1O" ZD4 InChI InChI 1.03 "InChI=1S/C10H14ClN5O10P2/c11-10-14-7(12)4-8(15-10)16(2-13-4)9-6(18)5(17)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,17-18H,1H2,(H,22,23)(H2,12,14,15)(H2,19,20,21)/t3-,5-,6-,9-/m1/s1" ZD4 InChIKey InChI 1.03 POWNGKCXGCOKLX-UUOKFMHZSA-N ZD4 SMILES_CANONICAL CACTVS 3.385 "Nc1nc(Cl)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" ZD4 SMILES CACTVS 3.385 "Nc1nc(Cl)nc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" ZD4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O)Cl)N" ZD4 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)Cl)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZD4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloroadenosine 5'-(trihydrogen diphosphate)" ZD4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-chloranyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZD4 "Create component" 2021-04-14 RCSB ZD4 "Initial release" 2021-12-08 RCSB ##