data_ZDK # _chem_comp.id ZDK _chem_comp.name "1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-08 _chem_comp.pdbx_modified_date 2023-09-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.479 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GEV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZDK C01 C1 C 0 1 Y N N 15.874 -8.694 -14.349 6.248 -1.962 -0.381 C01 ZDK 1 ZDK C02 C2 C 0 1 Y N N 14.541 -8.869 -13.968 5.348 -1.494 -1.321 C02 ZDK 2 ZDK C03 C3 C 0 1 Y N N 13.562 -7.958 -14.340 4.204 -0.834 -0.914 C03 ZDK 3 ZDK C04 C4 C 0 1 Y N N 13.903 -6.877 -15.116 3.958 -0.642 0.432 C04 ZDK 4 ZDK C05 C5 C 0 1 Y N N 15.223 -6.689 -15.495 4.857 -1.111 1.372 C05 ZDK 5 ZDK C06 C6 C 0 1 Y N N 16.186 -7.608 -15.135 5.999 -1.776 0.966 C06 ZDK 6 ZDK C07 C7 C 0 1 N N N 12.796 -5.893 -15.496 2.711 0.078 0.876 C07 ZDK 7 ZDK C08 C8 C 0 1 Y N N 12.499 -5.833 -17.028 2.786 1.521 0.448 C08 ZDK 8 ZDK C09 C9 C 0 1 Y N N 11.822 -4.733 -17.559 2.906 2.518 1.399 C09 ZDK 9 ZDK C10 C10 C 0 1 Y N N 11.601 -4.678 -18.927 2.974 3.842 1.007 C10 ZDK 10 ZDK C11 C11 C 0 1 Y N N 12.043 -5.699 -19.738 2.921 4.169 -0.335 C11 ZDK 11 ZDK C12 C12 C 0 1 Y N N 12.727 -6.782 -19.224 2.802 3.172 -1.286 C12 ZDK 12 ZDK C13 C13 C 0 1 Y N N 12.945 -6.832 -17.856 2.740 1.848 -0.894 C13 ZDK 13 ZDK C14 C14 C 0 1 Y N N 13.264 -4.425 -15.098 1.506 -0.571 0.246 C14 ZDK 14 ZDK C15 C15 C 0 1 Y N N 14.415 -2.556 -15.050 -0.338 -1.571 -0.036 C15 ZDK 15 ZDK C16 C16 C 0 1 N N N 15.539 -1.504 -15.279 -1.648 -2.285 0.176 C16 ZDK 16 ZDK C17 C17 C 0 1 N N N 15.455 -0.518 -13.306 -2.912 -0.606 -1.025 C17 ZDK 17 ZDK C18 C18 C 0 1 N N N 16.297 0.125 -12.177 -3.948 0.509 -0.864 C18 ZDK 18 ZDK C19 C19 C 0 1 N N N 17.104 -0.944 -11.453 -5.276 -0.098 -0.403 C19 ZDK 19 ZDK C20 C20 C 0 1 N N N 17.765 -1.802 -12.517 -5.054 -0.857 0.908 C20 ZDK 20 ZDK C21 C21 C 0 1 N N N 16.785 -2.225 -13.624 -3.986 -1.931 0.696 C21 ZDK 21 ZDK C22 C22 C 0 1 N N N 18.155 -0.262 -10.576 -6.299 1.018 -0.181 C22 ZDK 22 ZDK C23 C23 C 0 1 N N N 19.267 -0.404 -8.468 -8.601 1.406 0.363 C23 ZDK 23 ZDK N01 N1 N 0 1 Y N N 12.594 -3.624 -14.284 1.273 -0.688 -1.027 N01 ZDK 24 ZDK N02 N2 N 0 1 Y N N 14.378 -3.826 -15.581 0.476 -1.140 0.898 N02 ZDK 25 ZDK N03 N3 N 0 1 N N N 16.196 -1.178 -14.169 -2.735 -1.300 0.257 N03 ZDK 26 ZDK O01 O1 O 0 1 Y N N 13.291 -2.415 -14.207 0.218 -1.258 -1.210 O01 ZDK 27 ZDK O02 O2 O 0 1 N N N 18.408 -1.037 -9.415 -7.569 0.444 0.135 O02 ZDK 28 ZDK H01 H1 H 0 1 N N N 16.637 -9.391 -14.036 7.142 -2.477 -0.699 H01 ZDK 29 ZDK H02 H2 H 0 1 N N N 14.268 -9.728 -13.374 5.541 -1.644 -2.373 H02 ZDK 30 ZDK H05 H3 H 0 1 N N N 12.540 -8.098 -14.022 3.502 -0.468 -1.649 H05 ZDK 31 ZDK H03 H4 H 0 1 N N N 15.498 -5.820 -16.074 4.663 -0.965 2.425 H03 ZDK 32 ZDK H04 H5 H 0 1 N N N 17.202 -7.473 -15.475 6.701 -2.142 1.700 H04 ZDK 33 ZDK H11 H6 H 0 1 N N N 11.872 -6.138 -14.951 2.627 0.024 1.961 H11 ZDK 34 ZDK H07 H7 H 0 1 N N N 11.476 -3.938 -16.915 2.946 2.262 2.447 H07 ZDK 35 ZDK H08 H8 H 0 1 N N N 11.082 -3.834 -19.356 3.067 4.621 1.749 H08 ZDK 36 ZDK H09 H9 H 0 1 N N N 11.850 -5.651 -20.800 2.970 5.203 -0.641 H09 ZDK 37 ZDK H10 H10 H 0 1 N N N 13.083 -7.570 -19.871 2.761 3.428 -2.334 H10 ZDK 38 ZDK H06 H11 H 0 1 N N N 13.476 -7.673 -17.434 2.646 1.069 -1.636 H06 ZDK 39 ZDK H13 H12 H 0 1 N N N 16.259 -1.916 -16.001 -1.832 -2.962 -0.659 H13 ZDK 40 ZDK H12 H13 H 0 1 N N N 15.084 -0.593 -15.694 -1.605 -2.856 1.103 H12 ZDK 41 ZDK H15 H14 H 0 1 N N N 14.914 0.277 -13.840 -3.256 -1.315 -1.778 H15 ZDK 42 ZDK H14 H15 H 0 1 N N N 14.732 -1.214 -12.855 -1.961 -0.175 -1.339 H14 ZDK 43 ZDK H16 H16 H 0 1 N N N 16.983 0.867 -12.612 -3.599 1.226 -0.121 H16 ZDK 44 ZDK H17 H17 H 0 1 N N N 15.626 0.622 -11.461 -4.091 1.014 -1.819 H17 ZDK 45 ZDK H H18 H 0 1 N N N 16.439 -1.560 -10.830 -5.646 -0.785 -1.164 H ZDK 46 ZDK H19 H19 H 0 1 N N N 18.170 -2.707 -12.040 -4.722 -0.161 1.679 H19 ZDK 47 ZDK H18 H20 H 0 1 N N N 18.586 -1.229 -12.973 -5.987 -1.326 1.220 H18 ZDK 48 ZDK H21 H21 H 0 1 N N N 16.017 -2.883 -13.191 -3.815 -2.464 1.631 H21 ZDK 49 ZDK H20 H22 H 0 1 N N N 17.338 -2.771 -14.403 -4.324 -2.634 -0.065 H20 ZDK 50 ZDK H23 H23 H 0 1 N N N 19.088 -0.151 -11.148 -5.971 1.653 0.642 H23 ZDK 51 ZDK H22 H24 H 0 1 N N N 17.788 0.731 -10.276 -6.386 1.616 -1.088 H22 ZDK 52 ZDK H25 H25 H 0 1 N N N 19.411 -1.067 -7.602 -8.321 2.049 1.197 H25 ZDK 53 ZDK H26 H26 H 0 1 N N N 20.240 -0.196 -8.937 -8.736 2.012 -0.533 H26 ZDK 54 ZDK H24 H27 H 0 1 N N N 18.812 0.540 -8.134 -9.532 0.891 0.597 H24 ZDK 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZDK C11 C12 DOUB Y N 1 ZDK C11 C10 SING Y N 2 ZDK C12 C13 SING Y N 3 ZDK C10 C09 DOUB Y N 4 ZDK C13 C08 DOUB Y N 5 ZDK C09 C08 SING Y N 6 ZDK C08 C07 SING N N 7 ZDK N02 C14 SING Y N 8 ZDK N02 C15 DOUB Y N 9 ZDK C07 C04 SING N N 10 ZDK C07 C14 SING N N 11 ZDK C05 C06 DOUB Y N 12 ZDK C05 C04 SING Y N 13 ZDK C16 C15 SING N N 14 ZDK C16 N03 SING N N 15 ZDK C06 C01 SING Y N 16 ZDK C04 C03 DOUB Y N 17 ZDK C14 N01 DOUB Y N 18 ZDK C15 O01 SING Y N 19 ZDK C01 C02 DOUB Y N 20 ZDK C03 C02 SING Y N 21 ZDK N01 O01 SING Y N 22 ZDK N03 C21 SING N N 23 ZDK N03 C17 SING N N 24 ZDK C21 C20 SING N N 25 ZDK C17 C18 SING N N 26 ZDK C20 C19 SING N N 27 ZDK C18 C19 SING N N 28 ZDK C19 C22 SING N N 29 ZDK C22 O02 SING N N 30 ZDK O02 C23 SING N N 31 ZDK C01 H01 SING N N 32 ZDK C02 H02 SING N N 33 ZDK C03 H05 SING N N 34 ZDK C05 H03 SING N N 35 ZDK C06 H04 SING N N 36 ZDK C07 H11 SING N N 37 ZDK C09 H07 SING N N 38 ZDK C10 H08 SING N N 39 ZDK C11 H09 SING N N 40 ZDK C12 H10 SING N N 41 ZDK C13 H06 SING N N 42 ZDK C16 H13 SING N N 43 ZDK C16 H12 SING N N 44 ZDK C17 H15 SING N N 45 ZDK C17 H14 SING N N 46 ZDK C18 H16 SING N N 47 ZDK C18 H17 SING N N 48 ZDK C19 H SING N N 49 ZDK C20 H19 SING N N 50 ZDK C20 H18 SING N N 51 ZDK C21 H21 SING N N 52 ZDK C21 H20 SING N N 53 ZDK C22 H23 SING N N 54 ZDK C22 H22 SING N N 55 ZDK C23 H25 SING N N 56 ZDK C23 H26 SING N N 57 ZDK C23 H24 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZDK SMILES ACDLabs 12.01 "COCC1CCN(CC1)Cc1nc(no1)C(c1ccccc1)c1ccccc1" ZDK InChI InChI 1.06 "InChI=1S/C23H27N3O2/c1-27-17-18-12-14-26(15-13-18)16-21-24-23(25-28-21)22(19-8-4-2-5-9-19)20-10-6-3-7-11-20/h2-11,18,22H,12-17H2,1H3" ZDK InChIKey InChI 1.06 XYPQCOBQQQTCFN-UHFFFAOYSA-N ZDK SMILES_CANONICAL CACTVS 3.385 "COCC1CCN(CC1)Cc2onc(n2)C(c3ccccc3)c4ccccc4" ZDK SMILES CACTVS 3.385 "COCC1CCN(CC1)Cc2onc(n2)C(c3ccccc3)c4ccccc4" ZDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCC1CCN(CC1)Cc2nc(no2)C(c3ccccc3)c4ccccc4" ZDK SMILES "OpenEye OEToolkits" 2.0.7 "COCC1CCN(CC1)Cc2nc(no2)C(c3ccccc3)c4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZDK "SYSTEMATIC NAME" ACDLabs 12.01 "1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine" ZDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-(diphenylmethyl)-5-[[4-(methoxymethyl)piperidin-1-yl]methyl]-1,2,4-oxadiazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZDK "Create component" 2023-03-08 RCSB ZDK "Initial release" 2023-10-04 RCSB #