data_ZEV
#
_chem_comp.id ZEV
_chem_comp.name "(2R,5R,7R,8S,10R,12aR,14R,15S,15aR,16R)-7-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-15,16-difluoro-2,10-bis(sulfanyl)octahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H20 F2 N10 O9 P2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -2
_chem_comp.pdbx_initial_date 2021-04-15
_chem_comp.pdbx_modified_date 2022-04-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 708.509
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZEV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7MHC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZEV N1 N1 N 0 1 Y N N 49.581 7.259 -19.236 -6.276 -2.602 0.466 N1 ZEV 1
ZEV N3 N2 N 0 1 Y N N 52.588 6.489 -17.473 -7.663 0.578 0.444 N3 ZEV 2
ZEV C4 C1 C 0 1 Y N N 51.477 6.515 -18.215 -6.840 -0.459 0.323 C4 ZEV 3
ZEV C5 C2 C 0 1 Y N N 50.720 7.626 -18.538 -7.297 -1.738 0.683 C5 ZEV 4
ZEV C6 C3 C 0 1 Y N N 49.687 5.955 -19.337 -5.247 -1.950 0.007 C6 ZEV 5
ZEV C7 C4 C 0 1 Y N N 51.201 8.873 -18.084 -8.614 -1.863 1.158 C7 ZEV 6
ZEV C8 C5 C 0 1 Y N N 52.929 7.717 -17.078 -8.889 0.414 0.895 C8 ZEV 7
ZEV C10 C6 C 0 1 N N N 48.399 2.230 -19.804 -1.512 -0.904 -0.548 C10 ZEV 8
ZEV C13 C7 C 0 1 N N R 45.073 2.010 -16.028 2.059 1.735 -0.188 C13 ZEV 9
ZEV C15 C8 C 0 1 Y N N 43.991 6.329 -17.540 6.252 -0.321 0.355 C15 ZEV 10
ZEV C17 C9 C 0 1 Y N N 45.871 5.897 -16.508 5.424 1.430 1.406 C17 ZEV 11
ZEV O8 O1 O -1 1 N N N 48.988 4.774 -15.446 -1.078 4.956 -0.436 O8 ZEV 12
ZEV P P1 P 0 1 N N R 48.502 3.364 -15.254 -0.884 3.357 -0.514 P ZEV 13
ZEV O O2 O 0 1 N N N 46.958 3.351 -15.497 0.124 2.888 0.652 O ZEV 14
ZEV S S1 S 0 1 N N N 49.124 2.465 -13.662 -0.172 2.902 -2.176 S ZEV 15
ZEV O1 O3 O 0 1 N N N 48.773 2.529 -16.551 -2.309 2.641 -0.327 O1 ZEV 16
ZEV C1 C10 C 0 1 N N R 49.331 3.221 -17.677 -2.495 1.304 0.140 C1 ZEV 17
ZEV C9 C11 C 0 1 N N R 49.605 2.417 -18.929 -2.338 0.298 -1.012 C9 ZEV 18
ZEV O2 O4 O 0 1 N N N 50.571 3.256 -19.603 -3.638 -0.137 -1.409 O2 ZEV 19
ZEV C3 C12 C 0 1 N N R 51.238 4.052 -18.635 -4.647 0.432 -0.577 C3 ZEV 20
ZEV N N3 N 0 1 Y N N 50.818 5.442 -18.760 -5.545 -0.624 -0.099 N ZEV 21
ZEV N2 N4 N 0 1 Y N N 52.331 8.877 -17.344 -9.362 -0.768 1.245 N2 ZEV 22
ZEV N4 N5 N 0 1 N N N 50.611 10.045 -18.346 -9.119 -3.097 1.528 N4 ZEV 23
ZEV C2 C13 C 0 1 N N S 50.749 3.555 -17.280 -3.947 1.103 0.618 C2 ZEV 24
ZEV F1 F1 F 0 1 N N N 50.745 4.645 -16.397 -3.978 0.259 1.732 F1 ZEV 25
ZEV O3 O5 O 0 1 N N N 47.703 3.497 -19.807 -0.266 -0.904 -1.242 O3 ZEV 26
ZEV P1 P2 P 0 1 N N R 46.358 3.646 -20.600 0.948 -1.916 -0.952 P1 ZEV 27
ZEV S1 S2 S 0 1 N N N 46.263 2.579 -22.186 0.940 -3.277 -2.227 S1 ZEV 28
ZEV O7 O6 O -1 1 N N N 46.042 5.078 -20.821 0.793 -2.559 0.515 O7 ZEV 29
ZEV O4 O7 O 0 1 N N N 45.426 3.111 -19.460 2.341 -1.117 -1.040 O4 ZEV 30
ZEV C11 C14 C 0 1 N N S 45.572 3.097 -18.028 2.976 -0.452 0.045 C11 ZEV 31
ZEV C14 C15 C 0 1 N N R 44.487 3.880 -17.302 4.035 0.535 -0.499 C14 ZEV 32
ZEV O5 O8 O 0 1 N N N 44.342 3.258 -16.040 3.444 1.842 -0.542 O5 ZEV 33
ZEV C12 C16 C 0 1 N N R 45.399 1.708 -17.468 1.985 0.507 0.750 C12 ZEV 34
ZEV F F2 F 0 1 N N N 44.423 1.026 -18.212 0.701 -0.015 0.802 F ZEV 35
ZEV C C17 C 0 1 N N N 46.271 2.149 -15.135 1.549 2.981 0.521 C ZEV 36
ZEV N5 N6 N 0 1 Y N N 44.790 5.305 -17.113 5.196 0.548 0.390 N5 ZEV 37
ZEV N6 N7 N 0 1 Y N N 45.808 7.207 -16.505 6.553 1.149 1.989 N6 ZEV 38
ZEV C16 C18 C 0 1 Y N N 44.613 7.494 -17.142 7.114 0.074 1.384 C16 ZEV 39
ZEV C18 C19 C 0 1 N N N 43.978 8.741 -17.446 8.309 -0.657 1.585 C18 ZEV 40
ZEV O6 O9 O 0 1 N N N 44.377 9.875 -17.163 9.089 -0.348 2.470 O6 ZEV 41
ZEV N7 N8 N 0 1 N N N 42.794 8.565 -18.136 8.563 -1.706 0.772 N7 ZEV 42
ZEV C19 C20 C 0 1 N N N 42.265 7.356 -18.504 7.684 -2.042 -0.214 C19 ZEV 43
ZEV N9 N9 N 0 1 N N N 41.082 7.370 -19.118 7.971 -3.110 -1.027 N9 ZEV 44
ZEV N8 N10 N 0 1 N N N 42.846 6.191 -18.229 6.573 -1.369 -0.413 N8 ZEV 45
ZEV H11 H1 H 0 1 N N N 48.948 5.341 -19.831 -4.297 -2.394 -0.251 H11 ZEV 46
ZEV H12 H2 H 0 1 N N N 53.811 7.779 -16.458 -9.531 1.277 0.981 H12 ZEV 47
ZEV H15 H3 H 0 1 N N N 47.751 1.440 -19.397 -1.337 -0.834 0.525 H15 ZEV 48
ZEV H16 H4 H 0 1 N N N 48.707 1.962 -20.825 -2.053 -1.825 -0.757 H16 ZEV 49
ZEV H6 H5 H 0 1 N N N 44.429 1.209 -15.636 1.471 1.537 -1.082 H6 ZEV 50
ZEV H17 H6 H 0 1 N N N 46.690 5.340 -16.078 4.766 2.240 1.685 H17 ZEV 51
ZEV H H8 H 0 1 N N N 48.768 4.135 -17.917 -1.798 1.082 0.945 H ZEV 52
ZEV H3 H9 H 0 1 N N N 50.041 1.442 -18.666 -1.829 0.771 -1.855 H3 ZEV 53
ZEV H2 H10 H 0 1 N N N 52.331 3.956 -18.706 -5.211 1.177 -1.137 H2 ZEV 54
ZEV H13 H11 H 0 1 N N N 51.136 10.785 -17.924 -8.562 -3.889 1.460 H13 ZEV 55
ZEV H14 H12 H 0 1 N N N 50.573 10.185 -19.335 -10.029 -3.171 1.855 H14 ZEV 56
ZEV H1 H13 H 0 1 N N N 51.310 2.678 -16.924 -4.410 2.061 0.843 H1 ZEV 57
ZEV H4 H15 H 0 1 N N N 46.558 3.489 -17.739 3.418 -1.143 0.747 H4 ZEV 58
ZEV H7 H16 H 0 1 N N N 43.552 3.785 -17.873 4.333 0.233 -1.498 H7 ZEV 59
ZEV H5 H17 H 0 1 N N N 46.362 1.178 -17.516 2.351 0.765 1.742 H5 ZEV 60
ZEV H9 H18 H 0 1 N N N 45.949 2.206 -14.085 2.006 3.071 1.504 H9 ZEV 61
ZEV H10 H19 H 0 1 N N N 46.938 1.284 -15.268 1.798 3.867 -0.069 H10 ZEV 62
ZEV H8 H20 H 0 1 N N N 42.282 9.386 -18.387 9.376 -2.222 0.891 H8 ZEV 63
ZEV H19 H21 H 0 1 N N N 40.638 6.509 -19.368 7.358 -3.358 -1.736 H19 ZEV 64
ZEV H18 H22 H 0 1 N N N 40.638 8.241 -19.328 8.787 -3.617 -0.892 H18 ZEV 65
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZEV S1 P1 DOUB N N 1
ZEV O7 P1 SING N N 2
ZEV P1 O3 SING N N 3
ZEV P1 O4 SING N N 4
ZEV O3 C10 SING N N 5
ZEV C10 C9 SING N N 6
ZEV O2 C9 SING N N 7
ZEV O2 C3 SING N N 8
ZEV O4 C11 SING N N 9
ZEV C6 N1 DOUB Y N 10
ZEV C6 N SING Y N 11
ZEV N1 C5 SING Y N 12
ZEV N9 C19 SING N N 13
ZEV C9 C1 SING N N 14
ZEV N C3 SING N N 15
ZEV N C4 SING Y N 16
ZEV C3 C2 SING N N 17
ZEV C5 C4 DOUB Y N 18
ZEV C5 C7 SING Y N 19
ZEV C19 N8 DOUB N N 20
ZEV C19 N7 SING N N 21
ZEV N4 C7 SING N N 22
ZEV N8 C15 SING N N 23
ZEV C4 N3 SING Y N 24
ZEV F C12 SING N N 25
ZEV N7 C18 SING N N 26
ZEV C7 N2 DOUB Y N 27
ZEV C11 C12 SING N N 28
ZEV C11 C14 SING N N 29
ZEV C1 C2 SING N N 30
ZEV C1 O1 SING N N 31
ZEV C15 C16 DOUB Y N 32
ZEV C15 N5 SING Y N 33
ZEV N3 C8 DOUB Y N 34
ZEV C12 C13 SING N N 35
ZEV C18 O6 DOUB N N 36
ZEV C18 C16 SING N N 37
ZEV N2 C8 SING Y N 38
ZEV C14 N5 SING N N 39
ZEV C14 O5 SING N N 40
ZEV C2 F1 SING N N 41
ZEV C16 N6 SING Y N 42
ZEV N5 C17 SING Y N 43
ZEV O1 P SING N N 44
ZEV C17 N6 DOUB Y N 45
ZEV O5 C13 SING N N 46
ZEV C13 C SING N N 47
ZEV O P SING N N 48
ZEV O C SING N N 49
ZEV O8 P SING N N 50
ZEV P S DOUB N N 51
ZEV C6 H11 SING N N 52
ZEV C8 H12 SING N N 53
ZEV C10 H15 SING N N 54
ZEV C10 H16 SING N N 55
ZEV C13 H6 SING N N 56
ZEV C17 H17 SING N N 57
ZEV C1 H SING N N 58
ZEV C9 H3 SING N N 59
ZEV C3 H2 SING N N 60
ZEV N4 H13 SING N N 61
ZEV N4 H14 SING N N 62
ZEV C2 H1 SING N N 63
ZEV C11 H4 SING N N 64
ZEV C14 H7 SING N N 65
ZEV C12 H5 SING N N 66
ZEV C H9 SING N N 67
ZEV C H10 SING N N 68
ZEV N7 H8 SING N N 69
ZEV N9 H19 SING N N 70
ZEV N9 H18 SING N N 71
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZEV SMILES ACDLabs 12.01 "NC1=Nc2c(ncn2C2OC3COP([O-])(=S)OC4C(F)C(OC4COP([O-])(=S)OC2C3F)n2cnc3c(N)ncnc32)C(=O)N1"
ZEV InChI InChI 1.03 "InChI=1S/C20H22F2N10O9P2S2/c21-8-6-1-36-42(34,44)40-12-7(39-18(9(12)22)31-4-27-10-14(23)25-3-26-15(10)31)2-37-43(35,45)41-13(8)19(38-6)32-5-28-11-16(32)29-20(24)30-17(11)33/h3-9,12-13,18-19H,1-2H2,(H,34,44)(H,35,45)(H2,23,25,26)(H3,24,29,30,33)/p-2/t6-,7-,8-,9+,12-,13-,18-,19-,42-,43-/m1/s1"
ZEV InChIKey InChI 1.03 YSUIQYOGTINQIN-CLMXYZJCSA-L
ZEV SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P@@]([O-])(=S)O[C@H]5[C@H](F)[C@@H](O[C@@H]5CO[P@@]([O-])(=S)O[C@@H]3[C@@H]4F)n6cnc7c(N)ncnc67"
ZEV SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P]([O-])(=S)O[CH]5[CH](F)[CH](O[CH]5CO[P]([O-])(=S)O[CH]3[CH]4F)n6cnc7c(N)ncnc67"
ZEV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@H]4[C@H](O3)CO[P@@](=S)(O[C@@H]5[C@@H]([C@@H](CO[P@@](=S)(O4)[O-])O[C@H]5n6cnc7c6N=C(NC7=O)N)F)[O-])F)N"
ZEV SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=S)(OC5C(C(COP(=S)(O4)[O-])OC5n6cnc7c6N=C(NC7=O)N)F)[O-])F)N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZEV "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,5R,7R,8S,10R,12aR,14R,15S,15aR,16R)-7-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-15,16-difluoro-2,10-bis(sulfanylidene)octahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-bis(olate)"
ZEV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9-[(1~{S},3~{R},6~{R},8~{R},9~{S},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanidyl)-3,12-bis(sulfanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-2-azanyl-1~{H}-purin-6-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZEV "Create component" 2021-04-15 RCSB
ZEV "Modify descriptor" 2021-04-16 RCSB
ZEV "Initial release" 2022-04-06 RCSB
##