data_ZG5 # _chem_comp.id ZG5 _chem_comp.name "11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)dibenzo[b,f][1,4]thiazepine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-09 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZG5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GER _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZG5 C02 C1 C 0 1 N N N N N N 24.263 -80.553 -13.270 -4.393 -1.663 2.026 C02 ZG5 1 ZG5 C04 C2 C 0 1 N N S N N N 23.403 -80.146 -11.919 -4.468 -0.453 1.130 C04 ZG5 2 ZG5 C06 C3 C 0 1 N N R N N N 21.098 -80.991 -11.268 -3.118 1.000 -0.217 C06 ZG5 3 ZG5 C08 C4 C 0 1 N N N N N N 20.112 -83.504 -11.826 -0.903 1.704 0.463 C08 ZG5 4 ZG5 C09 C5 C 0 1 N N N N N N 19.559 -84.314 -13.107 0.477 2.107 -0.067 C09 ZG5 5 ZG5 C11 C6 C 0 1 N N N N N N 20.344 -84.388 -15.250 2.302 0.505 -0.559 C11 ZG5 6 ZG5 C13 C7 C 0 1 Y N N N N N 22.520 -85.680 -14.413 3.786 -1.263 -1.177 C13 ZG5 7 ZG5 C14 C8 C 0 1 Y N N N N N 23.255 -85.713 -13.145 4.311 -1.690 -2.402 C14 ZG5 8 ZG5 C15 C9 C 0 1 Y N N N N N 24.300 -86.635 -12.899 5.484 -2.417 -2.443 C15 ZG5 9 ZG5 C16 C10 C 0 1 Y N N N N N 24.644 -87.533 -13.910 6.151 -2.731 -1.274 C16 ZG5 10 ZG5 C17 C11 C 0 1 Y N N N N N 23.945 -87.484 -15.113 5.644 -2.315 -0.054 C17 ZG5 11 ZG5 C18 C12 C 0 1 Y N N N N N 22.898 -86.560 -15.349 4.470 -1.584 -0.001 C18 ZG5 12 ZG5 C20 C13 C 0 1 Y N N N N N 20.599 -85.552 -17.370 3.845 0.700 1.400 C20 ZG5 13 ZG5 C21 C14 C 0 1 Y N N N N N 20.041 -85.661 -18.676 4.587 1.476 2.276 C21 ZG5 14 ZG5 C22 C15 C 0 1 Y N N N N N 18.913 -84.914 -19.050 4.583 2.854 2.154 C22 ZG5 15 ZG5 C23 C16 C 0 1 Y N N N N N 18.311 -84.051 -18.168 3.837 3.460 1.158 C23 ZG5 16 ZG5 C24 C17 C 0 1 Y N N N N N 18.900 -83.987 -16.911 3.078 2.697 0.287 C24 ZG5 17 ZG5 C25 C18 C 0 1 Y N N N N N 20.005 -84.708 -16.515 3.082 1.301 0.391 C25 ZG5 18 ZG5 C26 C19 C 0 1 N N N N N N 19.270 -82.197 -13.948 0.204 0.359 -1.869 C26 ZG5 19 ZG5 C27 C20 C 0 1 N N N N N N 20.640 -81.954 -13.633 -1.166 0.026 -1.268 C27 ZG5 20 ZG5 C28 C21 C 0 1 N N R N N N 21.691 -81.307 -9.852 -4.007 0.770 -1.442 C28 ZG5 21 ZG5 C30 C22 C 0 1 N N S N N N 23.171 -80.865 -9.433 -5.436 0.469 -0.977 C30 ZG5 22 ZG5 C32 C23 C 0 1 N N S N N N 24.069 -81.028 -10.751 -5.411 -0.742 -0.040 C32 ZG5 23 ZG5 N07 N1 N 0 1 N N N N N N 20.975 -82.250 -12.213 -1.735 1.233 -0.653 N07 ZG5 24 ZG5 N10 N2 N 0 1 N N N N N N 19.256 -83.705 -14.276 1.035 0.975 -0.823 N10 ZG5 25 ZG5 N12 N3 N 0 1 N N N N N N 21.540 -84.681 -14.635 2.630 -0.554 -1.177 N12 ZG5 26 ZG5 O01 O1 O 0 1 N N N N N N 23.717 -81.298 -14.059 -3.351 -2.264 2.144 O01 ZG5 27 ZG5 O03 O2 O 0 1 N N N N N N 25.502 -80.181 -13.425 -5.482 -2.070 2.697 O03 ZG5 28 ZG5 O05 O3 O 0 1 N N N N N N 21.878 -79.980 -11.933 -3.165 -0.151 0.627 O05 ZG5 29 ZG5 O29 O4 O 0 1 N N N N N N 20.842 -80.584 -8.903 -4.008 1.942 -2.259 O29 ZG5 30 ZG5 O31 O5 O 0 1 N N N N N N 23.753 -81.665 -8.418 -6.256 0.180 -2.111 O31 ZG5 31 ZG5 O33 O6 O 0 1 N N N N N N 25.366 -80.708 -10.332 -6.728 -0.988 0.457 O33 ZG5 32 ZG5 S19 S1 S 0 1 N N N N N N 22.081 -86.598 -16.983 3.845 -1.061 1.562 S19 ZG5 33 ZG5 H041 H1 H 0 0 N N N N N N 23.770 -79.132 -11.700 -4.844 0.397 1.699 H041 ZG5 34 ZG5 H061 H2 H 0 0 N N N N N N 20.080 -80.605 -11.113 -3.477 1.870 0.333 H061 ZG5 35 ZG5 H081 H3 H 0 0 N N N N N N 19.253 -83.166 -11.228 -0.793 0.906 1.196 H081 ZG5 36 ZG5 H082 H4 H 0 0 N N N N N N 20.733 -84.184 -11.224 -1.378 2.566 0.931 H082 ZG5 37 ZG5 H091 H5 H 0 0 N N N N N N 18.638 -84.816 -12.777 0.380 2.973 -0.722 H091 ZG5 38 ZG5 H092 H6 H 0 0 N N N N N N 20.323 -85.069 -13.345 1.133 2.352 0.768 H092 ZG5 39 ZG5 H141 H8 H 0 0 N N N N N N 22.989 -85.008 -12.371 3.796 -1.449 -3.320 H141 ZG5 40 ZG5 H151 H9 H 0 0 N N N N N N 24.819 -86.643 -11.952 5.881 -2.743 -3.393 H151 ZG5 41 ZG5 H161 H10 H 0 0 N N N N N N 25.437 -88.252 -13.762 7.068 -3.302 -1.312 H161 ZG5 42 ZG5 H171 H11 H 0 0 N N N N N N 24.212 -88.178 -15.897 6.167 -2.561 0.858 H171 ZG5 43 ZG5 H211 H12 H 0 0 N N N N N N 20.494 -86.331 -19.392 5.169 1.005 3.054 H211 ZG5 44 ZG5 H221 H13 H 0 0 N N N N N N 18.512 -85.020 -20.047 5.163 3.457 2.837 H221 ZG5 45 ZG5 H231 H14 H 0 0 N N N N N N 17.443 -83.465 -18.432 3.835 4.536 1.070 H231 ZG5 46 ZG5 H241 H15 H 0 0 N N N N N N 18.456 -83.319 -16.187 2.498 3.179 -0.486 H241 ZG5 47 ZG5 H261 H16 H 0 0 N N N N N N 18.951 -81.600 -14.815 0.680 -0.554 -2.224 H261 ZG5 48 ZG5 H262 H17 H 0 0 N N N N N N 18.620 -81.972 -13.089 0.081 1.055 -2.699 H262 ZG5 49 ZG5 H271 H18 H 0 0 N N N N N N 21.265 -82.587 -14.279 -1.832 -0.329 -2.055 H271 ZG5 50 ZG5 H272 H19 H 0 0 N N N N N N 20.862 -80.895 -13.832 -1.053 -0.749 -0.510 H272 ZG5 51 ZG5 H281 H20 H 0 0 N N N N N N 21.601 -82.389 -9.676 -3.625 -0.075 -2.016 H281 ZG5 52 ZG5 H301 H21 H 0 0 N N N N N N 23.155 -79.803 -9.145 -5.836 1.334 -0.448 H301 ZG5 53 ZG5 H321 H22 H 0 0 N N N N N N 24.018 -82.082 -11.061 -5.058 -1.618 -0.585 H321 ZG5 54 ZG5 H5 H26 H 0 1 N N N N N N 25.856 -80.578 -14.212 -5.385 -2.851 3.259 H5 ZG5 55 ZG5 H291 H27 H 0 0 N N N N N N 21.153 -80.737 -8.019 -4.552 1.867 -3.055 H291 ZG5 56 ZG5 H311 H28 H 0 0 N N N N N N 23.241 -81.589 -7.621 -7.176 -0.020 -1.889 H311 ZG5 57 ZG5 H331 H29 H 0 0 N N N N N N 25.633 -81.305 -9.643 -6.786 -1.740 1.062 H331 ZG5 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZG5 C22 C21 DOUB Y N 1 ZG5 C22 C23 SING Y N 2 ZG5 C21 C20 SING Y N 3 ZG5 C23 C24 DOUB Y N 4 ZG5 C20 S19 SING N N 5 ZG5 C20 C25 DOUB Y N 6 ZG5 S19 C18 SING N N 7 ZG5 C24 C25 SING Y N 8 ZG5 C25 C11 SING N N 9 ZG5 C18 C17 DOUB Y N 10 ZG5 C18 C13 SING Y N 11 ZG5 C11 N12 DOUB N N 12 ZG5 C11 N10 SING N N 13 ZG5 C17 C16 SING Y N 14 ZG5 N12 C13 SING N N 15 ZG5 C13 C14 DOUB Y N 16 ZG5 N10 C26 SING N N 17 ZG5 N10 C09 SING N N 18 ZG5 O01 C02 DOUB N N 19 ZG5 C26 C27 SING N N 20 ZG5 C16 C15 DOUB Y N 21 ZG5 C27 N07 SING N N 22 ZG5 O03 C02 SING N N 23 ZG5 C02 C04 SING N N 24 ZG5 C14 C15 SING Y N 25 ZG5 C09 C08 SING N N 26 ZG5 N07 C08 SING N N 27 ZG5 N07 C06 SING N N 28 ZG5 O05 C04 SING N N 29 ZG5 O05 C06 SING N N 30 ZG5 C04 C32 SING N N 31 ZG5 C06 C28 SING N N 32 ZG5 C32 O33 SING N N 33 ZG5 C32 C30 SING N N 34 ZG5 C28 C30 SING N N 35 ZG5 C28 O29 SING N N 36 ZG5 C30 O31 SING N N 37 ZG5 C04 H041 SING N N 38 ZG5 C06 H061 SING N N 39 ZG5 C08 H081 SING N N 40 ZG5 C08 H082 SING N N 41 ZG5 C09 H091 SING N N 42 ZG5 C09 H092 SING N N 43 ZG5 C14 H141 SING N N 44 ZG5 C15 H151 SING N N 45 ZG5 C16 H161 SING N N 46 ZG5 C17 H171 SING N N 47 ZG5 C21 H211 SING N N 48 ZG5 C22 H221 SING N N 49 ZG5 C23 H231 SING N N 50 ZG5 C24 H241 SING N N 51 ZG5 C26 H261 SING N N 52 ZG5 C26 H262 SING N N 53 ZG5 C27 H271 SING N N 54 ZG5 C27 H272 SING N N 55 ZG5 C28 H281 SING N N 56 ZG5 C30 H301 SING N N 57 ZG5 C32 H321 SING N N 58 ZG5 O03 H5 SING N N 59 ZG5 O29 H291 SING N N 60 ZG5 O31 H311 SING N N 61 ZG5 O33 H331 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZG5 SMILES ACDLabs 12.01 "O=C(O)C1OC(C(O)C(O)C1O)N1CCN(CC1)C1=Nc2ccccc2Sc2ccccc21" ZG5 InChI InChI 1.06 "InChI=1S/C23H25N3O6S/c27-17-18(28)20(23(30)31)32-22(19(17)29)26-11-9-25(10-12-26)21-13-5-1-3-7-15(13)33-16-8-4-2-6-14(16)24-21/h1-8,17-20,22,27-29H,9-12H2,(H,30,31)/t17-,18-,19+,20-,22+/m0/s1" ZG5 InChIKey InChI 1.06 UKCFGNFADWVWOZ-SXFAUFNYSA-N ZG5 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)N2CCN(CC2)C3=Nc4ccccc4Sc5ccccc35" ZG5 SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)N2CCN(CC2)C3=Nc4ccccc4Sc5ccccc35" ZG5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=Nc3ccccc3S2)N4CCN(CC4)[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)C(=O)O)O)O)O" ZG5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=Nc3ccccc3S2)N4CCN(CC4)C5C(C(C(C(O5)C(=O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZG5 "SYSTEMATIC NAME" ACDLabs 12.01 "11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)dibenzo[b,f][1,4]thiazepine" ZG5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R},6~{R})-6-(4-benzo[b][1,4]benzothiazepin-6-ylpiperazin-1-yl)-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZG5 "Create component" 2023-03-09 RCSB ZG5 "Initial release" 2024-03-20 RCSB #