data_ZGD # _chem_comp.id ZGD _chem_comp.name "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 Cl2 F3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MGK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGD C01 C1 C 0 1 N N N 0.356 38.159 -12.585 8.183 1.831 0.695 C01 ZGD 1 ZGD N05 N1 N 0 1 N N N -0.505 38.482 -11.444 7.208 2.540 -0.139 N05 ZGD 2 ZGD C07 C2 C 0 1 Y N N -1.848 38.032 -11.468 5.938 2.015 -0.317 C07 ZGD 3 ZGD C08 C3 C 0 1 Y N N -2.340 37.295 -12.563 5.575 0.818 0.295 C08 ZGD 4 ZGD C10 C4 C 0 1 Y N N -3.686 36.885 -12.513 4.290 0.335 0.084 C10 ZGD 5 ZGD O11 O1 O 0 1 N N N -4.249 36.155 -13.534 3.889 -0.826 0.659 O11 ZGD 6 ZGD C12 C5 C 0 1 Y N N -5.313 35.312 -13.270 2.620 -1.253 0.419 C12 ZGD 7 ZGD C13 C6 C 0 1 Y N N -6.633 35.615 -13.649 1.585 -0.856 1.255 C13 ZGD 8 ZGD CL14 CL1 CL 0 0 N N N -7.039 37.096 -14.467 1.911 0.184 2.606 CL14 ZGD 9 ZGD C15 C7 C 0 1 Y N N -7.676 34.725 -13.371 0.296 -1.289 1.011 C15 ZGD 10 ZGD C17 C8 C 0 1 Y N N -7.438 33.520 -12.712 0.036 -2.121 -0.070 C17 ZGD 11 ZGD N18 N2 N 0 1 N N N -8.547 32.663 -12.475 -1.272 -2.560 -0.318 N18 ZGD 12 ZGD C20 C9 C 0 1 N N N -8.545 31.520 -11.785 -2.317 -1.761 -0.025 C20 ZGD 13 ZGD O21 O2 O 0 1 N N N -7.512 31.073 -11.237 -2.125 -0.626 0.364 O21 ZGD 14 ZGD N22 N3 N 0 1 N N N -9.705 30.866 -11.691 -3.576 -2.222 -0.165 N22 ZGD 15 ZGD C24 C10 C 0 1 Y N N -9.854 29.639 -10.999 -4.662 -1.361 0.033 C24 ZGD 16 ZGD C25 C11 C 0 1 Y N N -10.662 28.644 -11.553 -5.846 -1.848 0.570 C25 ZGD 17 ZGD C27 C12 C 0 1 Y N N -10.825 27.421 -10.891 -6.916 -0.996 0.764 C27 ZGD 18 ZGD C29 C13 C 0 1 Y N N -10.187 27.185 -9.671 -6.808 0.340 0.425 C29 ZGD 19 ZGD C31 C14 C 0 1 Y N N -9.387 28.185 -9.122 -5.630 0.828 -0.109 C31 ZGD 20 ZGD C32 C15 C 0 1 Y N N -9.221 29.406 -9.774 -4.555 -0.017 -0.300 C32 ZGD 21 ZGD C34 C16 C 0 1 N N N -8.690 27.937 -7.818 -5.517 2.285 -0.477 C34 ZGD 22 ZGD F35 F1 F 0 1 N N N -9.522 27.267 -7.030 -5.240 2.401 -1.844 F35 ZGD 23 ZGD F36 F2 F 0 1 N N N -8.336 29.094 -7.250 -6.722 2.934 -0.189 F36 ZGD 24 ZGD F37 F3 F 0 1 N N N -7.611 27.202 -8.066 -4.483 2.873 0.259 F37 ZGD 25 ZGD C38 C17 C 0 1 Y N N -6.127 33.213 -12.343 1.071 -2.517 -0.906 C38 ZGD 26 ZGD C40 C18 C 0 1 Y N N -5.085 34.097 -12.618 2.360 -2.080 -0.665 C40 ZGD 27 ZGD CL41 CL2 CL 0 0 N N N -3.482 33.654 -12.127 3.653 -2.570 -1.714 CL41 ZGD 28 ZGD N42 N4 N 0 1 Y N N -4.432 37.202 -11.439 3.457 1.027 -0.689 N42 ZGD 29 ZGD C43 C19 C 0 1 Y N N -3.933 37.910 -10.415 3.837 2.156 -1.251 C43 ZGD 30 ZGD N45 N5 N 0 1 Y N N -2.656 38.316 -10.430 5.045 2.651 -1.072 N45 ZGD 31 ZGD H1 H1 H 0 1 N N N 1.360 38.575 -12.417 7.793 1.734 1.708 H1 ZGD 32 ZGD H2 H2 H 0 1 N N N 0.425 37.067 -12.694 8.363 0.839 0.279 H2 ZGD 33 ZGD H3 H3 H 0 1 N N N -0.071 38.593 -13.501 9.118 2.391 0.717 H3 ZGD 34 ZGD H4 H4 H 0 1 N N N -0.076 38.091 -10.629 7.452 3.376 -0.565 H4 ZGD 35 ZGD H5 H5 H 0 1 N N N -1.710 37.054 -13.407 6.274 0.280 0.917 H5 ZGD 36 ZGD H6 H6 H 0 1 N N N -8.682 34.976 -13.672 -0.509 -0.982 1.661 H6 ZGD 37 ZGD H7 H7 H 0 1 N N N -9.422 32.946 -12.867 -1.424 -3.439 -0.699 H7 ZGD 38 ZGD H8 H8 H 0 1 N N N -10.510 31.263 -12.132 -3.730 -3.149 -0.403 H8 ZGD 39 ZGD H9 H9 H 0 1 N N N -11.162 28.818 -12.494 -5.932 -2.891 0.834 H9 ZGD 40 ZGD H10 H10 H 0 1 N N N -11.449 26.654 -11.327 -7.838 -1.374 1.181 H10 ZGD 41 ZGD H11 H11 H 0 1 N N N -10.312 26.241 -9.161 -7.646 1.004 0.578 H11 ZGD 42 ZGD H12 H12 H 0 1 N N N -8.602 30.173 -9.332 -3.633 0.366 -0.713 H12 ZGD 43 ZGD H13 H13 H 0 1 N N N -5.918 32.281 -11.839 0.869 -3.164 -1.747 H13 ZGD 44 ZGD H14 H14 H 0 1 N N N -4.564 38.154 -9.573 3.136 2.694 -1.873 H14 ZGD 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGD CL14 C13 SING N N 1 ZGD C13 C15 DOUB Y N 2 ZGD C13 C12 SING Y N 3 ZGD O11 C12 SING N N 4 ZGD O11 C10 SING N N 5 ZGD C15 C17 SING Y N 6 ZGD C12 C40 DOUB Y N 7 ZGD C17 N18 SING N N 8 ZGD C17 C38 DOUB Y N 9 ZGD C40 C38 SING Y N 10 ZGD C40 CL41 SING N N 11 ZGD C01 N05 SING N N 12 ZGD C08 C10 DOUB Y N 13 ZGD C08 C07 SING Y N 14 ZGD C10 N42 SING Y N 15 ZGD N18 C20 SING N N 16 ZGD C20 N22 SING N N 17 ZGD C20 O21 DOUB N N 18 ZGD N22 C24 SING N N 19 ZGD C25 C24 DOUB Y N 20 ZGD C25 C27 SING Y N 21 ZGD C07 N05 SING N N 22 ZGD C07 N45 DOUB Y N 23 ZGD N42 C43 DOUB Y N 24 ZGD C24 C32 SING Y N 25 ZGD C27 C29 DOUB Y N 26 ZGD N45 C43 SING Y N 27 ZGD C32 C31 DOUB Y N 28 ZGD C29 C31 SING Y N 29 ZGD C31 C34 SING N N 30 ZGD F37 C34 SING N N 31 ZGD C34 F36 SING N N 32 ZGD C34 F35 SING N N 33 ZGD C01 H1 SING N N 34 ZGD C01 H2 SING N N 35 ZGD C01 H3 SING N N 36 ZGD N05 H4 SING N N 37 ZGD C08 H5 SING N N 38 ZGD C15 H6 SING N N 39 ZGD N18 H7 SING N N 40 ZGD N22 H8 SING N N 41 ZGD C25 H9 SING N N 42 ZGD C27 H10 SING N N 43 ZGD C29 H11 SING N N 44 ZGD C32 H12 SING N N 45 ZGD C38 H13 SING N N 46 ZGD C43 H14 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGD SMILES ACDLabs 12.01 "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cc(ccc3)C(F)(F)F)cc2Cl)ncn1" ZGD InChI InChI 1.03 "InChI=1S/C19H14Cl2F3N5O2/c1-25-15-8-16(27-9-26-15)31-17-13(20)6-12(7-14(17)21)29-18(30)28-11-4-2-3-10(5-11)19(22,23)24/h2-9H,1H3,(H,25,26,27)(H2,28,29,30)" ZGD InChIKey InChI 1.03 QOQADIYOLOHRAW-UHFFFAOYSA-N ZGD SMILES_CANONICAL CACTVS 3.385 "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cccc(c3)C(F)(F)F)cc2Cl)ncn1" ZGD SMILES CACTVS 3.385 "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cccc(c3)C(F)(F)F)cc2Cl)ncn1" ZGD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1cc(ncn1)Oc2c(cc(cc2Cl)NC(=O)Nc3cccc(c3)C(F)(F)F)Cl" ZGD SMILES "OpenEye OEToolkits" 2.0.7 "CNc1cc(ncn1)Oc2c(cc(cc2Cl)NC(=O)Nc3cccc(c3)C(F)(F)F)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGD "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea" ZGD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[3,5-bis(chloranyl)-4-[6-(methylamino)pyrimidin-4-yl]oxy-phenyl]-3-[3-(trifluoromethyl)phenyl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGD "Create component" 2021-04-19 RCSB ZGD "Initial release" 2021-11-10 RCSB ##