data_ZGM # _chem_comp.id ZGM _chem_comp.name "(4S)-4-hydroxy-2-oxoheptanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.151 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MJF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGM OAC O1 O 0 1 N N N N N N 22.751 -22.679 73.106 -0.135 -1.400 0.976 OAC ZGM 1 ZGM CAM C1 C 0 1 N N S N N N 22.033 -21.796 73.980 -0.179 -0.420 -0.062 CAM ZGM 2 ZGM CAF C2 C 0 1 N N N N N N 21.764 -20.472 73.265 -1.480 0.378 0.044 CAF ZGM 3 ZGM CAK C3 C 0 1 N N N N N N 23.127 -19.952 72.826 -2.669 -0.547 -0.223 CAK ZGM 4 ZGM CAI C4 C 0 1 N N N N N N 23.111 -18.480 72.492 -3.950 0.239 -0.119 CAI ZGM 5 ZGM OAD O2 O 0 1 N N N N N N 22.549 -18.104 71.433 -3.916 1.418 0.143 OAD ZGM 6 ZGM OAA O3 O 0 1 N N N N N N 23.682 -17.697 73.287 -5.129 -0.371 -0.316 OAA ZGM 7 ZGM CAG C5 C 0 1 N N N N N N 20.784 -22.518 74.428 1.014 0.528 0.081 CAG ZGM 8 ZGM CAL C6 C 0 1 N N N N N N 20.158 -21.905 75.644 2.293 -0.236 -0.146 CAL ZGM 9 ZGM CAJ C7 C 0 1 N N N N N N 19.060 -20.988 75.413 3.605 0.466 -0.061 CAJ ZGM 10 ZGM OAE O4 O 0 1 N N N N N N 18.840 -20.635 74.231 3.644 1.651 0.191 OAE ZGM 11 ZGM OAB O5 O 0 1 N N N N N N 18.386 -20.613 76.389 4.748 -0.217 -0.263 OAB ZGM 12 ZGM H1 H1 H 0 1 N N N N N N 22.917 -23.501 73.552 -0.171 -1.030 1.869 H1 ZGM 13 ZGM H2 H2 H 0 1 N N N N N N 22.647 -21.585 74.868 -0.134 -0.915 -1.032 H2 ZGM 14 ZGM H3 H3 H 0 1 N N N N N N 21.284 -19.758 73.950 -1.566 0.801 1.045 H3 ZGM 15 ZGM H4 H4 H 0 1 N N N N N N 21.116 -20.634 72.391 -1.473 1.183 -0.691 H4 ZGM 16 ZGM H5 H5 H 0 1 N N N N N N 23.446 -20.511 71.934 -2.582 -0.970 -1.224 H5 ZGM 17 ZGM H6 H6 H 0 1 N N N N N N 23.846 -20.120 73.641 -2.675 -1.352 0.512 H6 ZGM 18 ZGM H7 H7 H 0 1 N N N N N N 23.616 -16.808 72.959 -5.924 0.174 -0.238 H7 ZGM 19 ZGM H8 H8 H 0 1 N N N N N N 20.052 -22.495 73.607 0.933 1.328 -0.655 H8 ZGM 20 ZGM H9 H9 H 0 1 N N N N N N 21.045 -23.562 74.657 1.019 0.956 1.083 H9 ZGM 21 ZGM H12 H12 H 0 1 N N N N N N 17.696 -20.030 76.093 5.574 0.281 -0.198 H12 ZGM 22 ZGM O10 O10 O 0 1 N Y N N N N 20.507 -22.185 76.836 2.255 -1.417 -0.396 O10 ZGM 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGM OAD CAI DOUB N N 1 ZGM CAI CAK SING N N 2 ZGM CAI OAA SING N N 3 ZGM CAK CAF SING N N 4 ZGM OAC CAM SING N N 5 ZGM CAF CAM SING N N 6 ZGM CAM CAG SING N N 7 ZGM OAE CAJ DOUB N N 8 ZGM CAG CAL SING N N 9 ZGM CAJ CAL SING N N 10 ZGM CAJ OAB SING N N 11 ZGM OAC H1 SING N N 12 ZGM CAM H2 SING N N 13 ZGM CAF H3 SING N N 14 ZGM CAF H4 SING N N 15 ZGM CAK H5 SING N N 16 ZGM CAK H6 SING N N 17 ZGM OAA H7 SING N N 18 ZGM CAG H8 SING N N 19 ZGM CAG H9 SING N N 20 ZGM OAB H12 SING N N 21 ZGM CAL O10 DOUB N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGM SMILES ACDLabs 12.01 "O=C(CC(O)CCC(O)=O)C(=O)O" ZGM InChI InChI 1.03 "InChI=1S/C7H10O6/c8-4(1-2-6(10)11)3-5(9)7(12)13/h4,8H,1-3H2,(H,10,11)(H,12,13)/t4-/m0/s1" ZGM InChIKey InChI 1.03 HNOAJOYERZTSNK-BYPYZUCNSA-N ZGM SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CCC(O)=O)CC(=O)C(O)=O" ZGM SMILES CACTVS 3.385 "O[CH](CCC(O)=O)CC(=O)C(O)=O" ZGM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C(CC(=O)C(=O)O)O" ZGM SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C(CC(=O)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGM "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-4-hydroxy-2-oxoheptanedioic acid" ZGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-oxidanyl-2-oxidanylidene-heptanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGM "Create component" 2021-04-20 RCSB ZGM "Initial release" 2021-07-14 RCSB ZGM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZGM _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAL _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #