data_ZGS # _chem_comp.id ZGS _chem_comp.name "[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H49 N O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "LysoPC(18:3(9Z,12Z,15Z))" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-04-21 _chem_comp.pdbx_modified_date 2021-06-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.644 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MJS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGS C01 C1 C 0 1 N N N 137.666 151.068 180.437 -13.076 4.658 2.211 C01 ZGS 1 ZGS C02 C2 C 0 1 N N N 138.527 151.423 181.664 -13.470 3.468 1.335 C02 ZGS 2 ZGS C03 C3 C 0 1 N N N 139.896 150.804 181.498 -13.008 3.710 -0.079 C03 ZGS 3 ZGS C04 C4 C 0 1 N N N 140.777 150.752 182.512 -12.296 2.802 -0.699 C04 ZGS 4 ZGS C05 C5 C 0 1 N N N 140.463 151.323 183.919 -12.070 1.455 -0.061 C05 ZGS 5 ZGS C06 C6 C 0 1 N N N 140.534 150.161 184.950 -12.484 0.369 -1.020 C06 ZGS 6 ZGS C07 C7 C 0 1 N N N 141.625 149.985 185.745 -11.657 -0.608 -1.299 C07 ZGS 7 ZGS C08 C8 C 0 1 N N N 142.845 150.928 185.662 -10.356 -0.732 -0.550 C08 ZGS 8 ZGS C09 C9 C 0 1 N N N 142.651 152.134 186.613 -10.241 -2.118 0.031 C09 ZGS 9 ZGS C10 C10 C 0 1 N N N 143.017 152.054 187.917 -9.175 -2.841 -0.207 C10 ZGS 10 ZGS C11 C11 C 0 1 N N N 143.636 150.754 188.496 -7.992 -2.230 -0.912 C11 ZGS 11 ZGS C12 C12 C 0 1 N N N 144.262 151.063 189.902 -6.728 -2.463 -0.082 C12 ZGS 12 ZGS C13 C13 C 0 1 N N N 143.499 150.343 191.042 -5.526 -1.843 -0.797 C13 ZGS 13 ZGS C14 C14 C 0 1 N N N 144.207 150.487 192.413 -4.262 -2.075 0.033 C14 ZGS 14 ZGS C15 C15 C 0 1 N N N 143.206 150.799 193.569 -3.061 -1.455 -0.683 C15 ZGS 15 ZGS C16 C16 C 0 1 N N N 142.081 151.772 193.137 -1.797 -1.688 0.148 C16 ZGS 16 ZGS C17 C17 C 0 1 N N N 142.512 153.251 193.275 -0.595 -1.067 -0.568 C17 ZGS 17 ZGS C18 C18 C 0 1 N N N 141.334 154.199 193.604 0.650 -1.297 0.250 C18 ZGS 18 ZGS C21 C19 C 0 1 N N N 140.401 155.684 195.191 2.990 -1.094 0.653 C21 ZGS 19 ZGS C22 C20 C 0 1 N N R 141.434 156.481 196.001 4.238 -0.498 -0.002 C22 ZGS 20 ZGS C23 C21 C 0 1 N N N 140.744 157.649 196.733 5.473 -0.876 0.817 C23 ZGS 21 ZGS C29 C22 C 0 1 N N N 140.632 160.652 199.215 10.593 0.181 0.083 C29 ZGS 22 ZGS C30 C23 C 0 1 N N N 140.543 161.797 200.247 11.314 0.963 -1.017 C30 ZGS 23 ZGS C32 C24 C 0 1 N N N 138.412 161.020 200.983 11.330 2.964 0.307 C32 ZGS 24 ZGS C33 C25 C 0 1 N N N 140.360 160.261 202.085 11.519 3.103 -2.081 C33 ZGS 25 ZGS C34 C26 C 0 1 N N N 139.637 162.503 202.349 9.438 2.457 -1.078 C34 ZGS 26 ZGS N31 N1 N 1 1 N N N 139.735 161.392 201.416 10.900 2.372 -0.967 N31 ZGS 27 ZGS O19 O1 O 0 1 N N N 140.755 154.762 192.737 0.583 -1.895 1.297 O19 ZGS 28 ZGS O20 O2 O 0 1 N N N 140.953 154.401 194.953 1.833 -0.836 -0.186 O20 ZGS 29 ZGS O24 O3 O 0 1 N N N 141.674 158.723 196.814 6.649 -0.421 0.145 O24 ZGS 30 ZGS O26 O4 O 0 1 N N N 141.841 160.967 195.493 8.217 -0.098 2.095 O26 ZGS 31 ZGS O27 O5 O 0 1 N N N 139.623 160.235 196.299 8.464 -2.222 0.754 O27 ZGS 32 ZGS O28 O6 O 0 1 N N N 141.324 161.121 198.059 9.198 0.106 -0.221 O28 ZGS 33 ZGS O35 O7 O 0 1 N N N 142.390 156.989 195.128 4.116 0.924 -0.053 O35 ZGS 34 ZGS P25 P1 P 0 1 N N N 141.102 160.282 196.627 8.134 -0.647 0.723 P25 ZGS 35 ZGS H1 H1 H 0 1 N N N 136.667 151.514 180.548 -13.543 5.564 1.826 H1 ZGS 36 ZGS H2 H2 H 0 1 N N N 138.144 151.461 179.528 -13.410 4.483 3.234 H2 ZGS 37 ZGS H3 H3 H 0 1 N N N 137.573 149.975 180.359 -11.992 4.775 2.199 H3 ZGS 38 ZGS H4 H4 H 0 1 N N N 138.623 152.516 181.744 -13.003 2.562 1.720 H4 ZGS 39 ZGS H5 H5 H 0 1 N N N 138.052 151.029 182.575 -14.554 3.351 1.347 H5 ZGS 40 ZGS H6 H6 H 0 1 N N N 140.174 150.392 180.539 -13.263 4.632 -0.580 H6 ZGS 41 ZGS H7 H7 H 0 1 N N N 141.740 150.295 182.340 -11.871 3.018 -1.668 H7 ZGS 42 ZGS H8 H8 H 0 1 N N N 141.201 152.096 184.179 -11.014 1.341 0.183 H8 ZGS 43 ZGS H9 H9 H 0 1 N N N 139.455 151.763 183.924 -12.663 1.381 0.850 H9 ZGS 44 ZGS H10 H10 H 0 1 N N N 139.701 149.480 185.037 -13.462 0.396 -1.476 H10 ZGS 45 ZGS H11 H11 H 0 1 N N N 141.638 149.167 186.450 -11.908 -1.324 -2.068 H11 ZGS 46 ZGS H12 H12 H 0 1 N N N 143.751 150.377 185.954 -9.525 -0.554 -1.232 H12 ZGS 47 ZGS H13 H13 H 0 1 N N N 142.954 151.292 184.630 -10.329 0.003 0.255 H13 ZGS 48 ZGS H14 H14 H 0 1 N N N 142.220 153.049 186.234 -11.037 -2.514 0.644 H14 ZGS 49 ZGS H15 H15 H 0 1 N N N 142.875 152.908 188.562 -9.145 -3.876 0.102 H15 ZGS 50 ZGS H16 H16 H 0 1 N N N 142.853 149.989 188.602 -7.873 -2.693 -1.891 H16 ZGS 51 ZGS H17 H17 H 0 1 N N N 144.419 150.385 187.817 -8.155 -1.159 -1.034 H17 ZGS 52 ZGS H18 H18 H 0 1 N N N 145.309 150.727 189.907 -6.846 -2.000 0.898 H18 ZGS 53 ZGS H19 H19 H 0 1 N N N 144.224 152.148 190.078 -6.565 -3.534 0.040 H19 ZGS 54 ZGS H20 H20 H 0 1 N N N 142.490 150.775 191.119 -5.408 -2.306 -1.777 H20 ZGS 55 ZGS H21 H21 H 0 1 N N N 143.423 149.274 190.795 -5.689 -0.772 -0.919 H21 ZGS 56 ZGS H22 H22 H 0 1 N N N 144.729 149.546 192.642 -4.381 -1.612 1.013 H22 ZGS 57 ZGS H23 H23 H 0 1 N N N 144.939 151.306 192.349 -4.100 -3.146 0.155 H23 ZGS 58 ZGS H24 H24 H 0 1 N N N 142.748 149.856 193.902 -2.942 -1.918 -1.662 H24 ZGS 59 ZGS H25 H25 H 0 1 N N N 143.762 151.251 194.404 -3.223 -0.384 -0.804 H25 ZGS 60 ZGS H26 H26 H 0 1 N N N 141.198 151.598 193.770 -1.915 -1.225 1.127 H26 ZGS 61 ZGS H27 H27 H 0 1 N N N 141.823 151.573 192.086 -1.634 -2.759 0.269 H27 ZGS 62 ZGS H28 H28 H 0 1 N N N 143.256 153.325 194.081 -0.477 -1.531 -1.548 H28 ZGS 63 ZGS H29 H29 H 0 1 N N N 142.966 153.573 192.326 -0.758 0.004 -0.690 H29 ZGS 64 ZGS H30 H30 H 0 1 N N N 140.199 156.190 194.236 3.120 -2.169 0.773 H30 ZGS 65 ZGS H31 H31 H 0 1 N N N 139.465 155.591 195.762 2.839 -0.635 1.631 H31 ZGS 66 ZGS H32 H32 H 0 1 N N N 141.894 155.816 196.746 4.339 -0.891 -1.014 H32 ZGS 67 ZGS H33 H33 H 0 1 N N N 139.853 157.967 196.172 5.414 -0.410 1.801 H33 ZGS 68 ZGS H34 H34 H 0 1 N N N 140.448 157.334 197.744 5.517 -1.959 0.931 H34 ZGS 69 ZGS H35 H35 H 0 1 N N N 139.619 160.330 198.933 11.006 -0.826 0.144 H35 ZGS 70 ZGS H36 H36 H 0 1 N N N 141.178 159.803 199.652 10.729 0.688 1.038 H36 ZGS 71 ZGS H37 H37 H 0 1 N N N 141.557 162.058 200.583 12.391 0.895 -0.865 H37 ZGS 72 ZGS H38 H38 H 0 1 N N N 140.077 162.673 199.773 11.057 0.543 -1.989 H38 ZGS 73 ZGS H39 H39 H 0 1 N N N 137.812 160.719 201.854 12.415 2.900 0.389 H39 ZGS 74 ZGS H40 H40 H 0 1 N N N 137.934 161.878 200.487 11.023 4.009 0.343 H40 ZGS 75 ZGS H41 H41 H 0 1 N N N 138.480 160.180 200.277 10.871 2.421 1.133 H41 ZGS 76 ZGS H42 H42 H 0 1 N N N 139.752 159.966 202.953 11.200 2.664 -3.026 H42 ZGS 77 ZGS H43 H43 H 0 1 N N N 140.433 159.416 201.385 11.213 4.148 -2.044 H43 ZGS 78 ZGS H44 H44 H 0 1 N N N 141.368 160.546 202.422 12.604 3.040 -1.998 H44 ZGS 79 ZGS H45 H45 H 0 1 N N N 139.035 162.200 203.219 8.982 2.090 -0.159 H45 ZGS 80 ZGS H46 H46 H 0 1 N N N 140.645 162.791 202.683 9.146 3.495 -1.240 H46 ZGS 81 ZGS H47 H47 H 0 1 N N N 139.157 163.358 201.851 9.101 1.850 -1.919 H47 ZGS 82 ZGS H48 H48 H 0 1 N N N 139.472 160.644 195.455 8.427 -2.649 -0.113 H48 ZGS 83 ZGS H49 H49 H 0 1 N N N 143.035 157.485 195.618 4.023 1.342 0.814 H49 ZGS 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGS C01 C02 SING N N 1 ZGS C03 C02 SING N N 2 ZGS C03 C04 DOUB N Z 3 ZGS C04 C05 SING N N 4 ZGS C05 C06 SING N N 5 ZGS C06 C07 DOUB N Z 6 ZGS C08 C07 SING N N 7 ZGS C08 C09 SING N N 8 ZGS C09 C10 DOUB N Z 9 ZGS C10 C11 SING N N 10 ZGS C11 C12 SING N N 11 ZGS C12 C13 SING N N 12 ZGS C13 C14 SING N N 13 ZGS C14 C15 SING N N 14 ZGS O19 C18 DOUB N N 15 ZGS C16 C17 SING N N 16 ZGS C16 C15 SING N N 17 ZGS C17 C18 SING N N 18 ZGS C18 O20 SING N N 19 ZGS O20 C21 SING N N 20 ZGS O35 C22 SING N N 21 ZGS C21 C22 SING N N 22 ZGS O26 P25 DOUB N N 23 ZGS C22 C23 SING N N 24 ZGS O27 P25 SING N N 25 ZGS P25 O24 SING N N 26 ZGS P25 O28 SING N N 27 ZGS C23 O24 SING N N 28 ZGS O28 C29 SING N N 29 ZGS C29 C30 SING N N 30 ZGS C30 N31 SING N N 31 ZGS C32 N31 SING N N 32 ZGS N31 C33 SING N N 33 ZGS N31 C34 SING N N 34 ZGS C01 H1 SING N N 35 ZGS C01 H2 SING N N 36 ZGS C01 H3 SING N N 37 ZGS C02 H4 SING N N 38 ZGS C02 H5 SING N N 39 ZGS C03 H6 SING N N 40 ZGS C04 H7 SING N N 41 ZGS C05 H8 SING N N 42 ZGS C05 H9 SING N N 43 ZGS C06 H10 SING N N 44 ZGS C07 H11 SING N N 45 ZGS C08 H12 SING N N 46 ZGS C08 H13 SING N N 47 ZGS C09 H14 SING N N 48 ZGS C10 H15 SING N N 49 ZGS C11 H16 SING N N 50 ZGS C11 H17 SING N N 51 ZGS C12 H18 SING N N 52 ZGS C12 H19 SING N N 53 ZGS C13 H20 SING N N 54 ZGS C13 H21 SING N N 55 ZGS C14 H22 SING N N 56 ZGS C14 H23 SING N N 57 ZGS C15 H24 SING N N 58 ZGS C15 H25 SING N N 59 ZGS C16 H26 SING N N 60 ZGS C16 H27 SING N N 61 ZGS C17 H28 SING N N 62 ZGS C17 H29 SING N N 63 ZGS C21 H30 SING N N 64 ZGS C21 H31 SING N N 65 ZGS C22 H32 SING N N 66 ZGS C23 H33 SING N N 67 ZGS C23 H34 SING N N 68 ZGS C29 H35 SING N N 69 ZGS C29 H36 SING N N 70 ZGS C30 H37 SING N N 71 ZGS C30 H38 SING N N 72 ZGS C32 H39 SING N N 73 ZGS C32 H40 SING N N 74 ZGS C32 H41 SING N N 75 ZGS C33 H42 SING N N 76 ZGS C33 H43 SING N N 77 ZGS C33 H44 SING N N 78 ZGS C34 H45 SING N N 79 ZGS C34 H46 SING N N 80 ZGS C34 H47 SING N N 81 ZGS O27 H48 SING N N 82 ZGS O35 H49 SING N N 83 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGS SMILES ACDLabs 12.01 "C[N+](C)(C)CCOP(O)(=O)OCC(O)COC(=O)CCCCCCC/C=C\C/C=C\C/C=C\CC" ZGS InChI InChI 1.03 "InChI=1S/C26H48NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-26(29)32-23-25(28)24-34-35(30,31)33-22-21-27(2,3)4/h6-7,9-10,12-13,25,28H,5,8,11,14-24H2,1-4H3/p+1/b7-6-,10-9-,13-12-/t25-/m1/s1" ZGS InChIKey InChI 1.03 WKQNRCYKYCKESD-YVHLTTHBSA-O ZGS SMILES_CANONICAL CACTVS 3.385 "CC\C=C/C/C=C\C\C=C/CCCCCCCC(=O)OC[C@@H](O)CO[P](O)(=O)OCC[N+](C)(C)C" ZGS SMILES CACTVS 3.385 "CCC=CCC=CCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OCC[N+](C)(C)C" ZGS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C=C\C/C=C\C/C=C\CCCCCCCC(=O)OC[C@H](COP(=O)(O)OCC[N+](C)(C)C)O" ZGS SMILES "OpenEye OEToolkits" 2.0.7 "CCC=CCC=CCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OCC[N+](C)(C)C)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGS "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,7R,18Z,21Z,24Z)-4,7-dihydroxy-N,N,N-trimethyl-4,10-dioxo-3,5,9-trioxa-4lambda~5~-phosphaheptacosa-18,21,24-trien-1-aminium" ZGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "trimethyl-[2-[[(2~{R})-3-[(9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZGS _pdbx_chem_comp_synonyms.name "LysoPC(18:3(9Z,12Z,15Z))" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGS "Create component" 2021-04-21 RCSB ZGS "Initial release" 2021-06-16 RCSB ##