data_ZGV # _chem_comp.id ZGV _chem_comp.name "4-[(1E)-3-{[(2E,4E,6E,8S)-8-hydroxy-4-methyldeca-2,4,6-trienoyl]amino}-3-oxoprop-1-en-1-yl]azete-1(2H)-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MK5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGV C1 C1 C 0 1 N N N N N N 3.783 40.131 78.828 9.082 -0.058 0.826 C1 ZGV 1 ZGV C2 C2 C 0 1 N N S N N N 4.953 41.056 79.123 8.168 0.341 -0.335 C2 ZGV 2 ZGV C3 C3 C 0 1 N N N N N N 5.858 40.501 80.181 6.912 -0.491 -0.294 C3 ZGV 3 ZGV C4 C4 C 0 1 N N N N N N 5.460 39.852 81.277 5.717 0.105 -0.266 C4 ZGV 4 ZGV C5 C5 C 0 1 N N N N N N 6.355 39.342 82.271 4.499 -0.702 -0.228 C5 ZGV 5 ZGV C6 C6 C 0 1 N N N N N N 6.044 38.685 83.413 3.285 -0.097 -0.199 C6 ZGV 6 ZGV C7 C7 C 0 1 N N N N N N 4.638 38.316 83.788 3.193 1.407 -0.208 C7 ZGV 7 ZGV O1 O1 O 0 1 N N N N N N 9.230 37.720 86.296 -0.209 -2.265 -0.089 O1 ZGV 8 ZGV O2 O2 O 0 1 N N N N N N 8.401 36.063 88.804 -2.539 -2.408 -0.024 O2 ZGV 9 ZGV O3 O3 O 0 1 N N N N N N 5.274 39.680 90.827 -4.961 1.903 -0.283 O3 ZGV 10 ZGV O5 O4 O 0 1 N N N N N N 5.698 41.240 77.911 7.827 1.724 -0.218 O5 ZGV 11 ZGV C8 C8 C 0 1 N N N N N N 7.103 38.388 84.360 2.111 -0.875 -0.162 C8 ZGV 12 ZGV C9 C9 C 0 1 N N N N N N 6.995 38.327 85.682 0.895 -0.269 -0.133 C9 ZGV 13 ZGV C10 C10 C 0 1 N N N N N N 8.077 38.019 86.643 -0.284 -1.050 -0.095 C10 ZGV 14 ZGV C11 C11 C 0 1 N N N N N N 7.868 37.174 88.974 -2.613 -1.193 -0.031 C11 ZGV 15 ZGV C12 C12 C 0 1 N N N N N N 7.329 37.625 90.273 -3.922 -0.541 -0.001 C12 ZGV 16 ZGV C13 C13 C 0 1 N N N N N N 7.309 37.037 91.461 -5.048 -1.287 0.035 C13 ZGV 17 ZGV C14 C14 C 0 1 N N N N N N 6.733 37.631 92.652 -6.357 -0.634 0.148 C14 ZGV 18 ZGV C15 C15 C 0 1 N N N N N N 6.627 37.278 93.955 -7.602 -1.082 0.328 C15 ZGV 19 ZGV C16 C16 C 0 1 N N N N N N 5.888 38.564 94.290 -8.178 0.306 0.302 C16 ZGV 20 ZGV C17 C17 C 0 1 N N N N N N 5.110 39.508 92.006 -6.150 1.876 -0.034 C17 ZGV 21 ZGV C18 C18 C 0 1 N N N N N N 2.811 40.702 77.805 10.408 0.696 0.714 C18 ZGV 22 ZGV N1 N1 N 0 1 N N N N N N 6.049 38.916 92.858 -6.782 0.695 0.114 N1 ZGV 23 ZGV N2 N2 N 0 1 N N N N N N 7.703 38.092 87.963 -1.490 -0.449 -0.067 N2 ZGV 24 ZGV H5 H1 H 0 1 N N N N N N 3.237 39.948 79.765 8.600 0.192 1.771 H5 ZGV 25 ZGV H4 H2 H 0 1 N N N N N N 4.178 39.180 78.442 9.270 -1.131 0.787 H4 ZGV 26 ZGV H6 H3 H 0 1 N N N N N N 4.557 42.023 79.466 8.685 0.173 -1.279 H6 ZGV 27 ZGV H8 H4 H 0 1 N N N N N N 6.921 40.638 80.045 6.978 -1.569 -0.288 H8 ZGV 28 ZGV H9 H5 H 0 1 N N N N N N 4.400 39.703 81.423 5.650 1.183 -0.273 H9 ZGV 29 ZGV H10 H6 H 0 1 N N N N N N 7.407 39.501 82.087 4.565 -1.780 -0.221 H10 ZGV 30 ZGV H12 H7 H 0 1 N N N N N N 4.642 37.791 84.755 3.142 1.762 -1.237 H12 ZGV 31 ZGV H11 H8 H 0 1 N N N N N N 4.029 39.228 83.868 2.296 1.719 0.328 H11 ZGV 32 ZGV H13 H9 H 0 1 N N N N N N 4.213 37.658 83.015 4.072 1.828 0.280 H13 ZGV 33 ZGV H7 H10 H 0 1 N N N N N N 6.435 41.817 78.076 7.363 1.947 0.600 H7 ZGV 34 ZGV H14 H11 H 0 1 N N N N N N 8.082 38.196 83.946 2.177 -1.953 -0.155 H14 ZGV 35 ZGV H15 H12 H 0 1 N N N N N N 6.018 38.522 86.098 0.828 0.809 -0.139 H15 ZGV 36 ZGV H17 H13 H 0 1 N N N N N N 6.872 38.603 90.251 -3.988 0.537 -0.007 H17 ZGV 37 ZGV H18 H14 H 0 1 N N N N N N 7.749 36.054 91.547 -4.984 -2.364 -0.019 H18 ZGV 38 ZGV H19 H15 H 0 1 N N N N N N 6.943 36.420 94.530 -8.031 -2.065 0.447 H19 ZGV 39 ZGV H21 H16 H 0 1 N N N N N N 6.411 39.230 94.992 -8.821 0.508 -0.555 H21 ZGV 40 ZGV H20 H17 H 0 1 N N N N N N 4.847 38.428 94.620 -8.608 0.630 1.250 H20 ZGV 41 ZGV H24 H19 H 0 1 N N N N N N 1.992 39.987 77.638 10.890 0.446 -0.231 H24 ZGV 42 ZGV H3 H20 H 0 1 N N N N N N 2.399 41.650 78.180 10.220 1.769 0.752 H3 ZGV 43 ZGV H25 H21 H 0 1 N N N N N N 3.340 40.882 76.857 11.059 0.412 1.540 H25 ZGV 44 ZGV H16 H22 H 0 1 N N N N N N 7.242 38.939 88.228 -1.550 0.519 -0.073 H16 ZGV 45 ZGV O4 O5 O 0 1 N Y N N N N 4.000 39.854 92.668 -6.837 3.027 0.093 O4 ZGV 46 ZGV H1 H23 H 0 1 N Y N N N N 3.381 40.248 92.065 -6.341 3.849 -0.022 H1 ZGV 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGV C18 C1 SING N N 1 ZGV O5 C2 SING N N 2 ZGV C1 C2 SING N N 3 ZGV C2 C3 SING N N 4 ZGV C3 C4 DOUB N E 5 ZGV C4 C5 SING N N 6 ZGV C5 C6 DOUB N E 7 ZGV C6 C7 SING N N 8 ZGV C6 C8 SING N N 9 ZGV C8 C9 DOUB N E 10 ZGV C9 C10 SING N N 11 ZGV O1 C10 DOUB N N 12 ZGV C10 N2 SING N N 13 ZGV N2 C11 SING N N 14 ZGV O2 C11 DOUB N N 15 ZGV C11 C12 SING N N 16 ZGV C12 C13 DOUB N E 17 ZGV O3 C17 DOUB N N 18 ZGV C13 C14 SING N N 19 ZGV C17 N1 SING N N 20 ZGV C14 N1 SING N N 21 ZGV C14 C15 DOUB N N 22 ZGV N1 C16 SING N N 23 ZGV C15 C16 SING N N 24 ZGV C1 H5 SING N N 25 ZGV C1 H4 SING N N 26 ZGV C2 H6 SING N N 27 ZGV C3 H8 SING N N 28 ZGV C4 H9 SING N N 29 ZGV C5 H10 SING N N 30 ZGV C7 H12 SING N N 31 ZGV C7 H11 SING N N 32 ZGV C7 H13 SING N N 33 ZGV O5 H7 SING N N 34 ZGV C8 H14 SING N N 35 ZGV C9 H15 SING N N 36 ZGV C12 H17 SING N N 37 ZGV C13 H18 SING N N 38 ZGV C15 H19 SING N N 39 ZGV C16 H21 SING N N 40 ZGV C16 H20 SING N N 41 ZGV C18 H24 SING N N 42 ZGV C18 H3 SING N N 43 ZGV C18 H25 SING N N 44 ZGV N2 H16 SING N N 45 ZGV C17 O4 SING N N 46 ZGV O4 H1 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGV SMILES ACDLabs 12.01 "OC(=O)N1CC=C1/C=C/C(=O)NC(=O)/C=CC(\C)=C\C=C\C(O)CC" ZGV InChI InChI 1.03 "InChI=1S/C18H22N2O5/c1-3-15(21)6-4-5-13(2)7-9-16(22)19-17(23)10-8-14-11-12-20(14)18(24)25/h4-11,15,21H,3,12H2,1-2H3,(H,24,25)(H,19,22,23)/b6-4+,9-7+,10-8+,13-5+/t15-/m0/s1" ZGV InChIKey InChI 1.03 SEMHODIMVPKJPJ-ATTYUXRXSA-N ZGV SMILES_CANONICAL CACTVS 3.385 "CC[C@H](O)\C=C\C=C(C)\C=C\C(=O)NC(=O)\C=C\C1=CCN1C(O)=O" ZGV SMILES CACTVS 3.385 "CC[CH](O)C=CC=C(C)C=CC(=O)NC(=O)C=CC1=CCN1C(O)=O" ZGV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](/C=C/C=C(\C)/C=C/C(=O)NC(=O)/C=C/C1=CCN1C(=O)O)O" ZGV SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C=CC=C(C)C=CC(=O)NC(=O)C=CC1=CCN1C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGV "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(1E)-3-{[(2E,4E,6E,8S)-8-hydroxy-4-methyldeca-2,4,6-trienoyl]amino}-3-oxoprop-1-en-1-yl]azete-1(2H)-carboxylic acid" ZGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(~{E})-3-[[(2~{E},4~{E},6~{E},8~{S})-4-methyl-8-oxidanyl-deca-2,4,6-trienoyl]amino]-3-oxidanylidene-prop-1-enyl]-2~{H}-azete-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGV "Create component" 2021-04-22 RCSB ZGV "Initial release" 2022-02-02 RCSB ZGV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZGV _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #