data_ZGW # _chem_comp.id ZGW _chem_comp.name Nirmatrelvir _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H32 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1R,2S,5S)-N-{(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-09 _chem_comp.pdbx_modified_date 2023-07-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GFU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGW C1 C1 C 0 1 N N N 13.354 1.115 16.993 -4.875 -1.700 1.463 C1 ZGW 1 ZGW C2 C2 C 0 1 N N S 13.019 -0.313 17.113 -4.318 -0.504 0.810 C2 ZGW 2 ZGW C3 C3 C 0 1 N N N 13.721 -1.157 16.032 -5.419 0.206 0.021 C3 ZGW 3 ZGW C4 C4 C 0 1 N N S 13.878 -2.632 16.402 -4.871 1.513 -0.556 C4 ZGW 4 ZGW C5 C5 C 0 1 N N N 14.722 -2.982 17.648 -4.507 2.496 0.580 C5 ZGW 5 ZGW C6 C6 C 0 1 N N N 15.447 -4.287 17.265 -4.909 3.854 -0.037 C6 ZGW 6 ZGW C8 C7 C 0 1 N N N 14.576 -3.387 15.267 -5.944 2.235 -1.342 C8 ZGW 7 ZGW C11 C8 C 0 1 N N N 10.850 -1.072 18.146 -1.981 -1.027 0.357 C11 ZGW 8 ZGW C12 C9 C 0 1 N N S 9.388 -1.484 17.907 -0.876 -1.437 -0.581 C12 ZGW 9 ZGW C14 C10 C 0 1 N N N 9.767 -3.862 18.246 1.270 -0.122 -0.220 C14 ZGW 10 ZGW C15 C11 C 0 1 N N S 9.514 -5.158 19.042 2.543 0.036 0.571 C15 ZGW 11 ZGW C16 C12 C 0 1 N N N 10.795 -5.765 19.717 2.247 0.791 1.868 C16 ZGW 12 ZGW C17 C13 C 0 1 N N N 11.849 -6.241 18.697 3.559 1.076 2.603 C17 ZGW 13 ZGW C18 C14 C 0 1 N N N 11.422 -4.691 20.628 1.549 2.113 1.541 C18 ZGW 14 ZGW C19 C15 C 0 1 N N N 10.361 -6.959 20.595 1.338 -0.059 2.758 C19 ZGW 15 ZGW C21 C16 C 0 1 N N N 7.551 -6.390 18.298 4.838 0.637 0.016 C21 ZGW 16 ZGW C24 C17 C 0 1 N N N 8.177 -2.592 19.767 0.660 -2.284 0.968 C24 ZGW 17 ZGW C25 C18 C 0 1 N N S 7.745 -1.142 19.714 0.120 -3.524 0.223 C25 ZGW 18 ZGW C26 C19 C 0 1 N N N 6.962 -0.651 18.513 0.394 -3.639 -1.278 C26 ZGW 19 ZGW C27 C20 C 0 1 N N N 6.130 0.601 18.743 0.270 -5.026 -1.913 C27 ZGW 20 ZGW C28 C21 C 0 1 N N N 6.319 -1.619 17.528 1.485 -2.741 -1.865 C28 ZGW 21 ZGW C29 C22 C 0 1 N N R 8.470 -0.455 18.572 -0.892 -2.965 -0.799 C29 ZGW 22 ZGW C32 C23 C 0 1 N N N 6.938 -7.280 17.201 5.843 1.410 -0.798 C32 ZGW 23 ZGW F33 F1 F 0 1 N N N 7.480 -8.511 17.263 7.135 1.088 -0.371 F33 ZGW 24 ZGW F34 F2 F 0 1 N N N 7.218 -6.766 15.990 5.702 1.079 -2.150 F34 ZGW 25 ZGW F35 F3 F 0 1 N N N 5.597 -7.401 17.302 5.624 2.782 -0.628 F35 ZGW 26 ZGW N10 N1 N 0 1 N N N 11.556 -0.475 17.146 -3.243 -0.902 -0.102 N10 ZGW 27 ZGW N13 N2 N 0 1 N N N 9.108 -2.746 18.622 0.447 -1.160 0.027 N13 ZGW 28 ZGW N20 N3 N 0 1 N N N 8.851 -6.130 18.169 3.520 0.788 -0.220 N20 ZGW 29 ZGW N31 N4 N 0 1 N N N 13.641 2.238 16.905 -5.305 -2.623 1.967 N31 ZGW 30 ZGW N7 N5 N 0 1 N N N 15.531 -4.176 15.808 -5.945 3.542 -1.028 N7 ZGW 31 ZGW O22 O1 O 0 1 N N N 6.812 -5.970 19.191 5.215 -0.122 0.884 O22 ZGW 32 ZGW O23 O2 O 0 1 N N N 10.556 -3.853 17.279 0.985 0.686 -1.079 O23 ZGW 33 ZGW O30 O3 O 0 1 N N N 11.402 -1.323 19.227 -1.737 -0.810 1.525 O30 ZGW 34 ZGW O9 O4 O 0 1 N N N 14.314 -3.271 14.063 -6.692 1.711 -2.140 O9 ZGW 35 ZGW H1 H1 H 0 1 N N N 13.408 -0.660 18.082 -3.920 0.171 1.568 H1 ZGW 36 ZGW H2 H2 H 0 1 N N N 14.722 -0.735 15.859 -5.756 -0.437 -0.792 H2 ZGW 37 ZGW H3 H3 H 0 1 N N N 13.131 -1.093 15.106 -6.257 0.425 0.683 H3 ZGW 38 ZGW H4 H4 H 0 1 N N N 12.875 -3.063 16.537 -4.002 1.316 -1.184 H4 ZGW 39 ZGW H5 H5 H 0 1 N N N 15.447 -2.183 17.864 -5.089 2.288 1.478 H5 ZGW 40 ZGW H6 H6 H 0 1 N N N 14.076 -3.138 18.524 -3.439 2.465 0.795 H6 ZGW 41 ZGW H7 H7 H 0 1 N N N 14.864 -5.170 17.565 -5.309 4.514 0.732 H7 ZGW 42 ZGW H8 H8 H 0 1 N N N 16.447 -4.336 17.720 -4.049 4.317 -0.522 H8 ZGW 43 ZGW H9 H9 H 0 1 N N N 9.174 -1.567 16.831 -0.974 -0.916 -1.534 H9 ZGW 44 ZGW H10 H10 H 0 1 N N N 8.818 -4.905 19.856 2.947 -0.948 0.808 H10 ZGW 45 ZGW H11 H11 H 0 1 N N N 12.717 -6.654 19.232 4.206 1.681 1.969 H11 ZGW 46 ZGW H12 H12 H 0 1 N N N 11.411 -7.018 18.054 3.348 1.614 3.527 H12 ZGW 47 ZGW H13 H13 H 0 1 N N N 12.170 -5.390 18.078 4.056 0.134 2.836 H13 ZGW 48 ZGW H14 H14 H 0 1 N N N 10.675 -4.347 21.358 0.614 1.910 1.018 H14 ZGW 49 ZGW H15 H15 H 0 1 N N N 12.284 -5.119 21.160 1.338 2.651 2.465 H15 ZGW 50 ZGW H16 H16 H 0 1 N N N 11.755 -3.840 20.016 2.196 2.718 0.907 H16 ZGW 51 ZGW H17 H17 H 0 1 N N N 9.609 -6.624 21.324 1.863 -0.969 3.049 H17 ZGW 52 ZGW H18 H18 H 0 1 N N N 9.929 -7.745 19.958 1.070 0.507 3.650 H18 ZGW 53 ZGW H19 H19 H 0 1 N N N 11.236 -7.359 21.128 0.434 -0.322 2.208 H19 ZGW 54 ZGW H20 H20 H 0 1 N N N 7.310 -3.260 19.656 0.123 -2.141 1.906 H20 ZGW 55 ZGW H21 H21 H 0 1 N N N 8.689 -2.811 20.716 1.728 -2.389 1.155 H21 ZGW 56 ZGW H22 H22 H 0 1 N N N 7.637 -0.596 20.663 -0.060 -4.426 0.807 H22 ZGW 57 ZGW H23 H23 H 0 1 N N N 6.645 1.257 19.460 -0.370 -4.966 -2.794 H23 ZGW 58 ZGW H24 H24 H 0 1 N N N 5.997 1.133 17.789 1.258 -5.382 -2.205 H24 ZGW 59 ZGW H25 H25 H 0 1 N N N 5.146 0.318 19.146 -0.168 -5.717 -1.193 H25 ZGW 60 ZGW H26 H26 H 0 1 N N N 5.227 -1.603 17.657 1.801 -2.016 -1.116 H26 ZGW 61 ZGW H27 H27 H 0 1 N N N 6.571 -1.318 16.501 2.338 -3.352 -2.163 H27 ZGW 62 ZGW H28 H28 H 0 1 N N N 6.695 -2.636 17.715 1.093 -2.216 -2.736 H28 ZGW 63 ZGW H29 H29 H 0 1 N N N 8.859 0.561 18.734 -1.854 -3.436 -1.003 H29 ZGW 64 ZGW H30 H30 H 0 1 N N N 11.038 -0.117 16.370 -3.438 -1.076 -1.036 H30 ZGW 65 ZGW H31 H31 H 0 1 N N N 9.382 -6.605 17.467 3.217 1.394 -0.914 H31 ZGW 66 ZGW H32 H32 H 0 1 N N N 16.230 -4.640 15.264 -6.554 4.195 -1.408 H32 ZGW 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGW O9 C8 DOUB N N 1 ZGW C8 N7 SING N N 2 ZGW C8 C4 SING N N 3 ZGW N7 C6 SING N N 4 ZGW F34 C32 SING N N 5 ZGW C3 C4 SING N N 6 ZGW C3 C2 SING N N 7 ZGW C4 C5 SING N N 8 ZGW N31 C1 TRIP N N 9 ZGW C1 C2 SING N N 10 ZGW C2 N10 SING N N 11 ZGW N10 C11 SING N N 12 ZGW C32 F33 SING N N 13 ZGW C32 F35 SING N N 14 ZGW C32 C21 SING N N 15 ZGW C6 C5 SING N N 16 ZGW O23 C14 DOUB N N 17 ZGW C28 C26 SING N N 18 ZGW C12 C11 SING N N 19 ZGW C12 C29 SING N N 20 ZGW C12 N13 SING N N 21 ZGW C11 O30 DOUB N N 22 ZGW N20 C21 SING N N 23 ZGW N20 C15 SING N N 24 ZGW C14 N13 SING N N 25 ZGW C14 C15 SING N N 26 ZGW C21 O22 DOUB N N 27 ZGW C26 C29 SING N N 28 ZGW C26 C27 SING N N 29 ZGW C26 C25 SING N N 30 ZGW C29 C25 SING N N 31 ZGW N13 C24 SING N N 32 ZGW C17 C16 SING N N 33 ZGW C15 C16 SING N N 34 ZGW C25 C24 SING N N 35 ZGW C16 C19 SING N N 36 ZGW C16 C18 SING N N 37 ZGW C2 H1 SING N N 38 ZGW C3 H2 SING N N 39 ZGW C3 H3 SING N N 40 ZGW C4 H4 SING N N 41 ZGW C5 H5 SING N N 42 ZGW C5 H6 SING N N 43 ZGW C6 H7 SING N N 44 ZGW C6 H8 SING N N 45 ZGW C12 H9 SING N N 46 ZGW C15 H10 SING N N 47 ZGW C17 H11 SING N N 48 ZGW C17 H12 SING N N 49 ZGW C17 H13 SING N N 50 ZGW C18 H14 SING N N 51 ZGW C18 H15 SING N N 52 ZGW C18 H16 SING N N 53 ZGW C19 H17 SING N N 54 ZGW C19 H18 SING N N 55 ZGW C19 H19 SING N N 56 ZGW C24 H20 SING N N 57 ZGW C24 H21 SING N N 58 ZGW C25 H22 SING N N 59 ZGW C27 H23 SING N N 60 ZGW C27 H24 SING N N 61 ZGW C27 H25 SING N N 62 ZGW C28 H26 SING N N 63 ZGW C28 H27 SING N N 64 ZGW C28 H28 SING N N 65 ZGW C29 H29 SING N N 66 ZGW N10 H30 SING N N 67 ZGW N20 H31 SING N N 68 ZGW N7 H32 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGW SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(C#N)CC3CCNC3=O)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" ZGW InChI InChI 1.06 "InChI=1S/C23H32F3N5O4/c1-21(2,3)16(30-20(35)23(24,25)26)19(34)31-10-13-14(22(13,4)5)15(31)18(33)29-12(9-27)8-11-6-7-28-17(11)32/h11-16H,6-8,10H2,1-5H3,(H,28,32)(H,29,33)(H,30,35)/t11-,12-,13-,14-,15-,16+/m0/s1" ZGW InChIKey InChI 1.06 LIENCHBZNNMNKG-OJFNHCPVSA-N ZGW SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)C#N)C2(C)C" ZGW SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)C#N)C2(C)C" ZGW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C#N)C" ZGW SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C#N)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGW "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" ZGW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(1~{S})-1-cyano-2-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]ethyl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGW "Create component" 2023-03-09 RCSB ZGW "Initial release" 2023-07-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZGW _pdbx_chem_comp_synonyms.name "(1R,2S,5S)-N-{(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #