data_ZH8 # _chem_comp.id ZH8 _chem_comp.name "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-2-yl)methoxy]oxan-3-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H22 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-03-10 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZH8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GFE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZH8 C1 C1 C 0 1 N N N -28.274 13.169 -61.078 -0.364 4.137 1.074 C1 ZH8 1 ZH8 C2 C2 C 0 1 N N N -29.233 13.694 -62.109 -0.844 2.922 0.323 C2 ZH8 2 ZH8 O1 O1 O 0 1 N N N -29.012 13.589 -63.304 -0.198 2.492 -0.609 O1 ZH8 3 ZH8 N1 N1 N 0 1 N N N -30.330 14.309 -61.666 -1.990 2.314 0.686 N1 ZH8 4 ZH8 C3 C3 C 0 1 N N R -31.430 14.757 -62.497 -2.457 1.133 -0.045 C3 ZH8 5 ZH8 C4 C4 C 0 1 N N R -31.549 16.267 -62.363 -3.976 1.007 0.102 C4 ZH8 6 ZH8 O2 O2 O 0 1 N N N -30.287 16.864 -62.608 -4.610 2.140 -0.496 O2 ZH8 7 ZH8 C5 C5 C 0 1 N N S -32.651 16.782 -63.293 -4.442 -0.272 -0.600 C5 ZH8 8 ZH8 O3 O3 O 0 1 N N N -32.797 18.190 -63.126 -5.848 -0.438 -0.408 O3 ZH8 9 ZH8 C6 C6 C 0 1 N N R -33.967 16.071 -62.944 -3.699 -1.471 -0.004 C6 ZH8 10 ZH8 C7 C7 C 0 1 N N N -35.133 16.400 -63.849 -4.115 -2.746 -0.741 C7 ZH8 11 ZH8 O4 O4 O 0 1 N N N -36.309 15.709 -63.394 -3.512 -3.878 -0.111 O4 ZH8 12 ZH8 O5 O5 O 0 1 N N N -33.795 14.645 -63.056 -2.291 -1.276 -0.146 O5 ZH8 13 ZH8 C8 C8 C 0 1 N N R -32.800 14.140 -62.171 -1.791 -0.120 0.530 C8 ZH8 14 ZH8 O6 O6 O 0 1 N N N -32.746 12.740 -62.312 -0.376 -0.035 0.345 O6 ZH8 15 ZH8 C9 C9 C 0 1 N N N -33.895 12.052 -61.809 0.354 -1.105 0.948 C9 ZH8 16 ZH8 C10 C10 C 0 1 N N N -33.391 10.913 -60.978 1.827 -0.915 0.693 C10 ZH8 17 ZH8 C11 C11 C 0 1 N N N -32.035 10.844 -60.581 2.819 -1.921 1.224 C11 ZH8 18 ZH8 C12 C12 C 0 1 N N N -31.579 9.733 -59.825 4.041 -1.883 0.330 C12 ZH8 19 ZH8 O7 O7 O 0 1 N N N -30.441 9.544 -59.406 4.622 -2.898 0.010 O7 ZH8 20 ZH8 N2 N2 N 1 1 Y N N -32.601 8.736 -59.529 4.461 -0.656 -0.102 N2 ZH8 21 ZH8 C13 C13 C 0 1 Y N N -32.252 7.621 -58.798 5.749 -0.460 -0.371 C13 ZH8 22 ZH8 C14 C14 C 0 1 Y N N -33.164 6.667 -58.511 6.204 0.767 -0.801 C14 ZH8 23 ZH8 C15 C15 C 0 1 Y N N -34.493 6.809 -58.959 5.301 1.814 -0.954 C15 ZH8 24 ZH8 C16 C16 C 0 1 Y N N -34.846 7.901 -59.673 3.966 1.591 -0.671 C16 ZH8 25 ZH8 C17 C17 C 0 1 Y N N -33.896 8.912 -59.981 3.558 0.327 -0.243 C17 ZH8 26 ZH8 N3 N3 N 0 1 N N N -34.284 9.961 -60.677 2.236 0.104 0.017 N3 ZH8 27 ZH8 H1 H1 H 0 1 N N N -27.409 12.711 -61.580 -1.069 4.373 1.872 H1 ZH8 28 ZH8 H2 H2 H 0 1 N N N -27.932 13.997 -60.440 0.616 3.934 1.505 H2 ZH8 29 ZH8 H3 H3 H 0 1 N N N -28.779 12.414 -60.458 -0.293 4.983 0.391 H3 ZH8 30 ZH8 H4 H4 H 0 1 N N N -30.399 14.474 -60.682 -2.507 2.658 1.431 H4 ZH8 31 ZH8 H5 H5 H 0 1 N N N -31.199 14.527 -63.548 -2.200 1.231 -1.100 H5 ZH8 32 ZH8 H6 H6 H 0 1 N N N -31.856 16.488 -61.330 -4.238 0.959 1.159 H6 ZH8 33 ZH8 H7 H7 H 0 1 N N N -29.645 16.508 -62.005 -5.575 2.126 -0.440 H7 ZH8 34 ZH8 H8 H8 H 0 1 N N N -32.382 16.544 -64.333 -4.226 -0.202 -1.666 H8 ZH8 35 ZH8 H9 H9 H 0 1 N N N -31.979 18.622 -63.344 -6.211 -1.232 -0.822 H9 ZH8 36 ZH8 H10 H10 H 0 1 N N N -34.239 16.331 -61.910 -3.948 -1.564 1.053 H10 ZH8 37 ZH8 H11 H11 H 0 1 N N N -34.899 16.085 -64.877 -5.199 -2.847 -0.709 H11 ZH8 38 ZH8 H12 H12 H 0 1 N N N -35.316 17.485 -63.830 -3.785 -2.690 -1.778 H12 ZH8 39 ZH8 H13 H13 H 0 1 N N N -37.040 15.917 -63.964 -3.732 -4.723 -0.526 H13 ZH8 40 ZH8 H14 H14 H 0 1 N N N -33.057 14.403 -61.134 -2.015 -0.195 1.594 H14 ZH8 41 ZH8 H15 H15 H 0 1 N N N -34.502 12.731 -61.192 0.169 -1.111 2.023 H15 ZH8 42 ZH8 H16 H16 H 0 1 N N N -34.503 11.672 -62.643 0.030 -2.053 0.519 H16 ZH8 43 ZH8 H17 H17 H 0 1 N N N -31.432 10.873 -61.500 3.101 -1.660 2.245 H17 ZH8 44 ZH8 H18 H18 H 0 1 N N N -31.832 11.743 -59.981 2.380 -2.919 1.206 H18 ZH8 45 ZH8 H19 H19 H 0 1 N N N -31.236 7.509 -58.450 6.448 -1.275 -0.251 H19 ZH8 46 ZH8 H20 H20 H 0 1 N N N -32.876 5.797 -57.939 7.252 0.914 -1.017 H20 ZH8 47 ZH8 H21 H21 H 0 1 N N N -35.226 6.049 -58.733 5.638 2.785 -1.287 H21 ZH8 48 ZH8 H22 H22 H 0 1 N N N -35.865 8.007 -60.014 3.245 2.388 -0.781 H22 ZH8 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZH8 C7 O4 SING N N 1 ZH8 C7 C6 SING N N 2 ZH8 O1 C2 DOUB N N 3 ZH8 C5 O3 SING N N 4 ZH8 C5 C6 SING N N 5 ZH8 C5 C4 SING N N 6 ZH8 O5 C6 SING N N 7 ZH8 O5 C8 SING N N 8 ZH8 O2 C4 SING N N 9 ZH8 C3 C4 SING N N 10 ZH8 C3 C8 SING N N 11 ZH8 C3 N1 SING N N 12 ZH8 O6 C8 SING N N 13 ZH8 O6 C9 SING N N 14 ZH8 C2 N1 SING N N 15 ZH8 C2 C1 SING N N 16 ZH8 C9 C10 SING N N 17 ZH8 C10 N3 DOUB N N 18 ZH8 C10 C11 SING N N 19 ZH8 N3 C17 SING N N 20 ZH8 C11 C12 SING N N 21 ZH8 C17 C16 DOUB Y N 22 ZH8 C17 N2 SING Y N 23 ZH8 C12 N2 SING N N 24 ZH8 C12 O7 DOUB N N 25 ZH8 C16 C15 SING Y N 26 ZH8 N2 C13 DOUB Y N 27 ZH8 C15 C14 DOUB Y N 28 ZH8 C13 C14 SING Y N 29 ZH8 C1 H1 SING N N 30 ZH8 C1 H2 SING N N 31 ZH8 C1 H3 SING N N 32 ZH8 N1 H4 SING N N 33 ZH8 C3 H5 SING N N 34 ZH8 C4 H6 SING N N 35 ZH8 O2 H7 SING N N 36 ZH8 C5 H8 SING N N 37 ZH8 O3 H9 SING N N 38 ZH8 C6 H10 SING N N 39 ZH8 C7 H11 SING N N 40 ZH8 C7 H12 SING N N 41 ZH8 O4 H13 SING N N 42 ZH8 C8 H14 SING N N 43 ZH8 C9 H15 SING N N 44 ZH8 C9 H16 SING N N 45 ZH8 C11 H17 SING N N 46 ZH8 C11 H18 SING N N 47 ZH8 C13 H19 SING N N 48 ZH8 C14 H20 SING N N 49 ZH8 C15 H21 SING N N 50 ZH8 C16 H22 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZH8 SMILES ACDLabs 12.01 "CC(=O)NC1C(O)C(O)C(CO)OC1OCC=1CC(=O)[n+]2ccccc2N=1" ZH8 InChI InChI 1.06 "InChI=1S/C17H21N3O7/c1-9(22)18-14-16(25)15(24)11(7-21)27-17(14)26-8-10-6-13(23)20-5-3-2-4-12(20)19-10/h2-5,11,14-17,21,24-25H,6-8H2,1H3/p+1/t11-,14-,15-,16-,17-/m1/s1" ZH8 InChIKey InChI 1.06 IMUQPAHFXRVTMB-JSPVNYKOSA-O ZH8 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1OCC2=Nc3cccc[n+]3C(=O)C2" ZH8 SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OCC2=Nc3cccc[n+]3C(=O)C2" ZH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OCC2=Nc3cccc[n+]3C(=O)C2)CO)O)O" ZH8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OCC2=Nc3cccc[n+]3C(=O)C2)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZH8 "SYSTEMATIC NAME" ACDLabs 12.01 "(4-oxo-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium-2-yl)methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside" ZH8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-2-yl)methoxy]oxan-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZH8 "Create component" 2023-03-10 RCSB ZH8 "Initial release" 2023-05-24 RCSB #