data_ZHT # _chem_comp.id ZHT _chem_comp.name "6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-[3-(dimethylamino)propyl]-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H36 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-23 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZHT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PIW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZHT C1 C1 C 0 1 N N N N N N -4.274 -27.963 12.369 5.140 -1.742 -2.621 C1 ZHT 1 ZHT O1 O1 O 0 1 N N N N N N 2.703 -25.372 18.059 4.075 -1.993 2.510 O1 ZHT 2 ZHT C2 C2 C 0 1 N N N N N N -3.112 -25.913 12.776 3.817 0.142 -1.870 C2 ZHT 3 ZHT C21 C3 C 0 1 Y N N N N N -0.797 -28.313 19.492 -5.156 -0.921 0.030 C21 ZHT 4 ZHT C3 C4 C 0 1 N N N N N N -3.025 -24.887 13.892 2.383 0.600 -1.596 C3 ZHT 5 ZHT O3 O2 O 0 1 N N N N N N 1.246 -26.780 15.513 -1.208 -3.350 -1.380 O3 ZHT 6 ZHT C4 C5 C 0 1 N N N N N N -1.656 -24.963 14.561 2.408 1.889 -0.772 C4 ZHT 7 ZHT N4 N1 N 0 1 Y N N N N N 2.894 -22.822 17.369 1.261 -0.078 1.613 N4 ZHT 8 ZHT C5 C6 C 0 1 N N N N N N -2.707 -24.600 16.698 0.304 2.700 -1.683 C5 ZHT 9 ZHT C6 C7 C 0 1 N N N N N N -2.464 -24.181 18.139 -1.150 3.178 -1.504 C6 ZHT 10 ZHT C7 C8 C 0 1 N N N N N N -1.047 -22.309 18.573 -2.615 2.592 0.301 C7 ZHT 11 ZHT C8 C9 C 0 1 N N N N N N 0.270 -21.742 18.074 -1.778 3.321 1.369 C8 ZHT 12 ZHT C9 C10 C 0 1 N N N N N N -0.144 -22.357 15.657 0.547 2.960 1.829 C9 ZHT 13 ZHT C10 C11 C 0 1 N N N N N N -1.615 -22.728 15.518 1.019 3.491 0.463 C10 ZHT 14 ZHT C11 C12 C 0 1 N N N N N N 1.719 -20.962 16.204 -0.799 1.095 1.035 C11 ZHT 15 ZHT C12 C13 C 0 1 Y N N N N N 2.899 -21.540 16.957 -0.047 -0.008 1.733 C12 ZHT 16 ZHT N N2 N 0 1 N N N N N N -4.418 -26.580 12.863 3.793 -1.159 -2.553 N ZHT 17 ZHT C C14 C 0 1 N N N N N N -5.409 -25.843 12.065 3.202 -1.039 -3.892 C ZHT 18 ZHT O O3 O 0 1 N N N N N N 4.619 -25.352 19.154 4.065 -0.085 1.378 O ZHT 19 ZHT C13 C15 C 0 1 Y N N N N N 4.010 -20.744 17.231 -0.742 -0.936 2.492 C13 ZHT 20 ZHT C14 C16 C 0 1 Y N N N N N 5.092 -21.287 17.931 -0.046 -1.949 3.132 C14 ZHT 21 ZHT C15 C17 C 0 1 Y N N N N N 5.036 -22.615 18.349 1.331 -1.999 2.988 C15 ZHT 22 ZHT C16 C18 C 0 1 Y N N N N N 3.909 -23.366 18.047 1.965 -1.033 2.209 C16 ZHT 23 ZHT C17 C19 C 0 1 N N N N N N 3.743 -24.795 18.450 3.436 -1.072 2.044 C17 ZHT 24 ZHT C18 C20 C 0 1 N N N N N N -0.454 -24.507 19.442 -2.801 1.386 -1.804 C18 ZHT 25 ZHT C19 C21 C 0 1 Y N N N N N -0.404 -25.974 19.059 -3.387 0.148 -1.176 C19 ZHT 26 ZHT C20 C22 C 0 1 Y N N N N N -0.860 -26.982 19.906 -4.620 0.220 -0.547 C20 ZHT 27 ZHT C22 C23 C 0 1 Y N N N N N -0.293 -28.613 18.233 -4.431 -2.100 -0.041 C22 ZHT 28 ZHT C23 C24 C 0 1 Y N N N N N 0.140 -27.566 17.420 -3.195 -2.098 -0.684 C23 ZHT 29 ZHT C24 C25 C 0 1 N N N N N N 0.700 -27.773 16.046 -2.405 -3.348 -0.763 C24 ZHT 30 ZHT N1 N3 N 0 1 N N N N N N -1.617 -24.172 15.802 1.033 2.296 -0.457 N1 ZHT 31 ZHT N2 N4 N 0 1 N N N N N N -1.069 -23.762 18.324 -1.879 2.027 -0.856 N2 ZHT 32 ZHT N3 N5 N 0 1 N N N N N N 0.338 -21.369 16.631 -0.782 2.304 1.870 N3 ZHT 33 ZHT N5 N6 N 0 1 Y N N N N N 0.067 -26.295 17.845 -2.718 -0.982 -1.224 N5 ZHT 34 ZHT O2 O4 O 0 1 N N N N N N 0.607 -28.883 15.477 -2.837 -4.371 -0.272 O2 ZHT 35 ZHT H11 H1 H 0 1 N N N N N N -3.529 -28.495 12.979 5.526 -1.884 -1.612 H11 ZHT 36 ZHT H12 H2 H 0 1 N N N N N N -5.242 -28.480 12.439 5.094 -2.704 -3.131 H12 ZHT 37 ZHT H13 H3 H 0 1 N N N N N N -3.943 -27.945 11.320 5.799 -1.070 -3.171 H13 ZHT 38 ZHT H23 H4 H 0 1 N N N N N N -2.307 -26.655 12.889 4.318 0.875 -2.502 H23 ZHT 39 ZHT H22 H5 H 0 1 N N N N N N -3.015 -25.412 11.802 4.355 0.047 -0.927 H22 ZHT 40 ZHT H211 H6 H 0 0 N N N N N N -1.137 -29.103 20.145 -6.115 -0.891 0.526 H211 ZHT 41 ZHT H31 H7 H 0 1 N N N N N N -3.171 -23.880 13.474 1.873 0.783 -2.542 H31 ZHT 42 ZHT H32 H8 H 0 1 N N N N N N -3.807 -25.092 14.638 1.854 -0.175 -1.042 H32 ZHT 43 ZHT H4 H9 H 0 1 N N N N N N 1.557 -27.016 14.647 -0.729 -4.190 -1.406 H4 ZHT 44 ZHT H42 H10 H 0 1 N N N N N N -1.433 -26.013 14.799 2.958 1.718 0.154 H42 ZHT 45 ZHT H41 H11 H 0 1 N N N N N N -0.897 -24.575 13.866 2.898 2.677 -1.344 H41 ZHT 46 ZHT H52 H12 H 0 1 N N N N N N -3.648 -24.148 16.352 0.297 1.850 -2.366 H52 ZHT 47 ZHT H51 H13 H 0 1 N N N N N N -2.790 -25.696 16.657 0.866 3.504 -2.158 H51 ZHT 48 ZHT H61 H14 H 0 1 N N N N N N -3.130 -23.342 18.389 -1.181 4.055 -0.858 H61 ZHT 49 ZHT H62 H15 H 0 1 N N N N N N -2.678 -25.031 18.804 -1.593 3.406 -2.473 H62 ZHT 50 ZHT H72 H16 H 0 1 N N N N N N -1.146 -22.118 19.652 -3.150 1.778 0.790 H72 ZHT 51 ZHT H71 H17 H 0 1 N N N N N N -1.881 -21.831 18.038 -3.355 3.295 -0.083 H71 ZHT 52 ZHT H81 H18 H 0 1 N N N N N N 1.049 -22.496 18.260 -1.258 4.170 0.926 H81 ZHT 53 ZHT H82 H19 H 0 1 N N N N N N 0.487 -20.838 18.662 -2.418 3.657 2.185 H82 ZHT 54 ZHT H92 H20 H 0 1 N N N N N N 0.386 -23.294 15.886 1.287 2.243 2.185 H92 ZHT 55 ZHT H91 H21 H 0 1 N N N N N N 0.172 -21.990 14.669 0.531 3.796 2.528 H91 ZHT 56 ZHT H101 H22 H 0 0 N N N N N N -2.232 -22.180 16.246 0.324 4.245 0.092 H101 ZHT 57 ZHT H102 H23 H 0 0 N N N N N N -1.980 -22.524 14.501 2.022 3.912 0.549 H102 ZHT 58 ZHT H111 H24 H 0 0 N N N N N N 1.832 -21.250 15.148 -0.324 1.309 0.077 H111 ZHT 59 ZHT H112 H25 H 0 0 N N N N N N 1.779 -19.867 16.294 -1.830 0.783 0.868 H112 ZHT 60 ZHT H3 H27 H 0 1 N N N N N N -5.500 -24.817 12.450 3.133 -2.027 -4.348 H3 ZHT 61 ZHT H2 H28 H 0 1 N N N N N N -5.085 -25.813 11.014 2.206 -0.605 -3.812 H2 ZHT 62 ZHT H1 H29 H 0 1 N N N N N N -6.384 -26.348 12.134 3.830 -0.398 -4.510 H1 ZHT 63 ZHT H6 H30 H 0 1 N N N N N N 4.362 -26.250 19.329 5.027 -0.154 1.297 H6 ZHT 64 ZHT H131 H31 H 0 0 N N N N N N 4.035 -19.715 16.905 -1.816 -0.869 2.585 H131 ZHT 65 ZHT H141 H32 H 0 0 N N N N N N 5.962 -20.684 18.145 -0.566 -2.684 3.730 H141 ZHT 66 ZHT H151 H33 H 0 0 N N N N N N 5.856 -23.053 18.899 1.905 -2.775 3.472 H151 ZHT 67 ZHT H182 H34 H 0 0 N N N N N N 0.565 -24.134 19.623 -2.259 1.113 -2.709 H182 ZHT 68 ZHT H181 H35 H 0 0 N N N N N N -1.058 -24.380 20.352 -3.602 2.080 -2.056 H181 ZHT 69 ZHT H201 H36 H 0 0 N N N N N N -1.260 -26.734 20.878 -5.158 1.155 -0.506 H201 ZHT 70 ZHT H221 H37 H 0 0 N N N N N N -0.238 -29.636 17.891 -4.818 -3.008 0.398 H221 ZHT 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZHT C N SING N N 1 ZHT C1 N SING N N 2 ZHT C2 N SING N N 3 ZHT C2 C3 SING N N 4 ZHT C3 C4 SING N N 5 ZHT C4 N1 SING N N 6 ZHT O2 C24 DOUB N N 7 ZHT O3 C24 SING N N 8 ZHT C10 C9 SING N N 9 ZHT C10 N1 SING N N 10 ZHT C9 N3 SING N N 11 ZHT N1 C5 SING N N 12 ZHT C24 C23 SING N N 13 ZHT C11 N3 SING N N 14 ZHT C11 C12 SING N N 15 ZHT N3 C8 SING N N 16 ZHT C5 C6 SING N N 17 ZHT C12 C13 DOUB Y N 18 ZHT C12 N4 SING Y N 19 ZHT C13 C14 SING Y N 20 ZHT N4 C16 DOUB Y N 21 ZHT C23 N5 DOUB Y N 22 ZHT C23 C22 SING Y N 23 ZHT N5 C19 SING Y N 24 ZHT C14 C15 DOUB Y N 25 ZHT C16 C15 SING Y N 26 ZHT C16 C17 SING N N 27 ZHT O1 C17 DOUB N N 28 ZHT C8 C7 SING N N 29 ZHT C6 N2 SING N N 30 ZHT C22 C21 DOUB Y N 31 ZHT N2 C7 SING N N 32 ZHT N2 C18 SING N N 33 ZHT C17 O SING N N 34 ZHT C19 C18 SING N N 35 ZHT C19 C20 DOUB Y N 36 ZHT C21 C20 SING Y N 37 ZHT C1 H11 SING N N 38 ZHT C1 H12 SING N N 39 ZHT C1 H13 SING N N 40 ZHT C2 H23 SING N N 41 ZHT C2 H22 SING N N 42 ZHT C21 H211 SING N N 43 ZHT C3 H31 SING N N 44 ZHT C3 H32 SING N N 45 ZHT O3 H4 SING N N 46 ZHT C4 H42 SING N N 47 ZHT C4 H41 SING N N 48 ZHT C5 H52 SING N N 49 ZHT C5 H51 SING N N 50 ZHT C6 H61 SING N N 51 ZHT C6 H62 SING N N 52 ZHT C7 H72 SING N N 53 ZHT C7 H71 SING N N 54 ZHT C8 H81 SING N N 55 ZHT C8 H82 SING N N 56 ZHT C9 H92 SING N N 57 ZHT C9 H91 SING N N 58 ZHT C10 H101 SING N N 59 ZHT C10 H102 SING N N 60 ZHT C11 H111 SING N N 61 ZHT C11 H112 SING N N 62 ZHT C H3 SING N N 63 ZHT C H2 SING N N 64 ZHT C H1 SING N N 65 ZHT O H6 SING N N 66 ZHT C13 H131 SING N N 67 ZHT C14 H141 SING N N 68 ZHT C15 H151 SING N N 69 ZHT C18 H182 SING N N 70 ZHT C18 H181 SING N N 71 ZHT C20 H201 SING N N 72 ZHT C22 H221 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZHT InChI InChI 1.06 "InChI=1S/C25H36N6O4/c1-28(2)10-5-11-29-12-14-30(18-20-6-3-8-22(26-20)24(32)33)16-17-31(15-13-29)19-21-7-4-9-23(27-21)25(34)35/h3-4,6-9H,5,10-19H2,1-2H3,(H,32,33)(H,34,35)" ZHT InChIKey InChI 1.06 PCYMPEWCWVVCFC-UHFFFAOYSA-N ZHT SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCN1CCN(CCN(CC1)Cc2cccc(n2)C(O)=O)Cc3cccc(n3)C(O)=O" ZHT SMILES CACTVS 3.385 "CN(C)CCCN1CCN(CCN(CC1)Cc2cccc(n2)C(O)=O)Cc3cccc(n3)C(O)=O" ZHT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCN1CCN(CCN(CC1)Cc2cccc(n2)C(=O)O)Cc3cccc(n3)C(=O)O" ZHT SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCCN1CCN(CCN(CC1)Cc2cccc(n2)C(=O)O)Cc3cccc(n3)C(=O)O" # _pdbx_chem_comp_identifier.comp_id ZHT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-[3-(dimethylamino)propyl]-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZHT "Create component" 2023-06-23 PDBE ZHT "Initial release" 2024-07-10 RCSB #