data_ZIE # _chem_comp.id ZIE _chem_comp.name "4-nitrophenyl 2-acetamido-4-O-(2-acetamido-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-beta-D-glucopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N3 O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-13 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.494 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZIE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GFL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZIE C1 C1 C 0 1 N N N -28.440 -62.326 -13.961 -2.812 -4.498 1.769 C1 ZIE 1 ZIE C2 C2 C 0 1 N N N -29.489 -63.308 -14.399 -3.240 -3.061 1.622 C2 ZIE 2 ZIE C3 C3 C 0 1 N N R -31.692 -63.606 -15.468 -4.339 -1.272 0.385 C3 ZIE 3 ZIE C4 C4 C 0 1 N N R -31.899 -63.487 -16.971 -5.556 -1.192 -0.541 C4 ZIE 4 ZIE C5 C5 C 0 1 N N S -33.124 -64.289 -17.417 -5.933 0.278 -0.745 C5 ZIE 5 ZIE C7 C6 C 0 1 N N N -35.603 -64.702 -16.891 -5.076 2.516 -1.455 C7 ZIE 6 ZIE C9 C7 C 0 1 N N S -33.812 -62.691 -12.555 -0.908 0.169 0.150 C9 ZIE 7 ZIE C10 C8 C 0 1 N N R -34.733 -63.717 -11.893 -0.461 1.267 1.120 C10 ZIE 8 ZIE C12 C9 C 0 1 N N N -37.693 -64.087 -10.164 2.087 3.920 1.130 C12 ZIE 9 ZIE C13 C10 C 0 1 N N N -38.267 -65.179 -9.308 2.578 4.950 2.114 C13 ZIE 10 ZIE C14 C11 C 0 1 N N S -34.768 -62.217 -9.911 1.892 0.813 0.420 C14 ZIE 11 ZIE C15 C12 C 0 1 N N R -33.005 -61.940 -11.501 0.221 -0.854 -0.006 C15 ZIE 12 ZIE C16 C13 C 0 1 N N N -32.151 -60.835 -12.058 -0.195 -1.922 -1.019 C16 ZIE 13 ZIE C17 C14 C 0 1 Y N N -35.151 -60.998 -7.872 4.162 0.574 -0.243 C17 ZIE 14 ZIE C18 C15 C 0 1 Y N N -36.059 -60.689 -6.873 4.078 -0.754 0.148 C18 ZIE 15 ZIE C19 C16 C 0 1 Y N N -35.616 -60.159 -5.680 5.176 -1.582 0.020 C19 ZIE 16 ZIE C20 C17 C 0 1 Y N N -34.252 -59.926 -5.508 6.359 -1.087 -0.498 C20 ZIE 17 ZIE C21 C18 C 0 1 Y N N -33.331 -60.252 -6.504 6.446 0.236 -0.888 C21 ZIE 18 ZIE C22 C19 C 0 1 Y N N -33.793 -60.781 -7.691 5.350 1.068 -0.763 C22 ZIE 19 ZIE O1 O1 O 0 1 N N N -29.335 -64.519 -14.277 -2.970 -2.256 2.489 O1 ZIE 20 ZIE N1 N1 N 0 1 N N N -30.573 -62.807 -15.009 -3.923 -2.669 0.528 N1 ZIE 21 ZIE O2 O2 O 0 1 N N N -30.728 -63.889 -17.655 -6.653 -1.892 0.050 O2 ZIE 22 ZIE O3 O3 O 0 1 N N N -33.409 -63.969 -18.776 -7.022 0.369 -1.665 O3 ZIE 23 ZIE C6 C20 C 0 1 N N R -34.358 -63.912 -16.589 -4.725 1.034 -1.306 C6 ZIE 24 ZIE O4 O4 O 0 1 N N N -36.676 -64.286 -16.042 -3.991 3.200 -2.086 O4 ZIE 25 ZIE O5 O5 O 0 1 N N N -34.071 -64.113 -15.199 -3.620 0.894 -0.411 O5 ZIE 26 ZIE C8 C21 C 0 1 N N S -33.013 -63.252 -14.767 -3.193 -0.456 -0.219 C8 ZIE 27 ZIE O6 O6 O 0 1 N N N -32.853 -63.343 -13.395 -2.072 -0.480 0.667 O6 ZIE 28 ZIE O7 O7 O 0 1 N N N -35.531 -64.426 -12.831 -1.480 2.264 1.215 O7 ZIE 29 ZIE C11 C22 C 0 1 N N R -35.610 -63.004 -10.869 0.830 1.902 0.594 C11 ZIE 30 ZIE N2 N2 N 0 1 N N N -36.381 -63.939 -10.074 1.308 2.904 1.551 N2 ZIE 31 ZIE O8 O8 O 0 1 N N N -38.371 -63.396 -10.925 2.392 4.005 -0.041 O8 ZIE 32 ZIE O9 O9 O 0 1 N N N -33.921 -61.309 -10.596 1.400 -0.192 -0.468 O9 ZIE 33 ZIE O10 O10 O 0 1 N N N -31.293 -60.276 -11.037 0.804 -2.942 -1.073 O10 ZIE 34 ZIE O11 O11 O 0 1 N N N -35.654 -61.526 -9.051 3.081 1.389 -0.123 O11 ZIE 35 ZIE N3 N3 N 1 1 N N N -33.770 -59.388 -4.206 7.535 -1.976 -0.635 N3 ZIE 36 ZIE O12 O12 O 0 1 N N N -32.653 -58.861 -4.135 7.459 -3.142 -0.290 O12 ZIE 37 ZIE O13 O13 O -1 1 N N N -34.494 -59.547 -3.236 8.577 -1.542 -1.091 O13 ZIE 38 ZIE H1 H1 H 0 1 N N N -27.579 -62.870 -13.544 -3.594 -5.060 2.280 H1 ZIE 39 ZIE H2 H2 H 0 1 N N N -28.113 -61.729 -14.825 -2.641 -4.929 0.782 H2 ZIE 40 ZIE H3 H3 H 0 1 N N N -28.860 -61.660 -13.193 -1.891 -4.546 2.351 H3 ZIE 41 ZIE H4 H4 H 0 1 N N N -31.477 -64.662 -15.247 -4.597 -0.867 1.364 H4 ZIE 42 ZIE H5 H5 H 0 1 N N N -32.098 -62.429 -17.196 -5.312 -1.643 -1.503 H5 ZIE 43 ZIE H6 H6 H 0 1 N N N -32.920 -65.364 -17.301 -6.225 0.715 0.210 H6 ZIE 44 ZIE H7 H7 H 0 1 N N N -35.888 -64.541 -17.941 -5.973 2.617 -2.065 H7 ZIE 45 ZIE H8 H8 H 0 1 N N N -35.403 -65.771 -16.725 -5.254 2.948 -0.471 H8 ZIE 46 ZIE H9 H9 H 0 1 N N N -34.416 -61.976 -13.133 -1.137 0.610 -0.820 H9 ZIE 47 ZIE H10 H10 H 0 1 N N N -34.098 -64.432 -11.349 -0.280 0.834 2.103 H10 ZIE 48 ZIE H11 H11 H 0 1 N N N -39.352 -65.246 -9.477 3.176 4.461 2.883 H11 ZIE 49 ZIE H12 H12 H 0 1 N N N -37.795 -66.137 -9.571 3.189 5.688 1.593 H12 ZIE 50 ZIE H13 H13 H 0 1 N N N -38.074 -64.954 -8.249 1.725 5.446 2.577 H13 ZIE 51 ZIE H14 H14 H 0 1 N N N -34.158 -62.920 -9.325 2.114 0.365 1.389 H14 ZIE 52 ZIE H15 H15 H 0 1 N N N -32.367 -62.655 -10.961 0.421 -1.324 0.956 H15 ZIE 53 ZIE H16 H16 H 0 1 N N N -31.528 -61.237 -12.870 -1.146 -2.360 -0.716 H16 ZIE 54 ZIE H17 H17 H 0 1 N N N -32.803 -60.042 -12.454 -0.303 -1.467 -2.004 H17 ZIE 55 ZIE H18 H18 H 0 1 N N N -37.113 -60.863 -7.028 3.154 -1.140 0.554 H18 ZIE 56 ZIE H19 H19 H 0 1 N N N -36.315 -59.928 -4.890 5.111 -2.616 0.325 H19 ZIE 57 ZIE H20 H20 H 0 1 N N N -32.274 -60.093 -6.348 7.371 0.620 -1.292 H20 ZIE 58 ZIE H21 H21 H 0 1 N N N -33.097 -61.026 -8.480 5.418 2.101 -1.068 H21 ZIE 59 ZIE H22 H22 H 0 1 N N N -30.612 -61.819 -15.157 -4.139 -3.313 -0.165 H22 ZIE 60 ZIE H23 H23 H 0 1 N N N -29.991 -63.371 -17.353 -7.459 -1.882 -0.484 H23 ZIE 61 ZIE H24 H24 H 0 1 N N N -34.168 -64.461 -19.065 -7.314 1.274 -1.841 H24 ZIE 62 ZIE H25 H25 H 0 1 N N N -34.573 -62.848 -16.765 -4.460 0.623 -2.279 H25 ZIE 63 ZIE H26 H26 H 0 1 N N N -37.454 -64.792 -16.243 -4.144 4.146 -2.214 H26 ZIE 64 ZIE H27 H27 H 0 1 N N N -33.265 -62.216 -15.039 -2.907 -0.887 -1.179 H27 ZIE 65 ZIE H28 H28 H 0 1 N N N -36.083 -65.048 -12.372 -1.263 2.992 1.814 H28 ZIE 66 ZIE H29 H29 H 0 1 N N N -36.288 -62.319 -11.399 0.636 2.380 -0.367 H29 ZIE 67 ZIE H30 H30 H 0 1 N N N -35.890 -64.509 -9.415 1.064 2.835 2.487 H30 ZIE 68 ZIE H31 H31 H 0 1 N N N -30.764 -59.581 -11.412 0.606 -3.655 -1.696 H31 ZIE 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZIE O3 C5 SING N N 1 ZIE O2 C4 SING N N 2 ZIE C5 C4 SING N N 3 ZIE C5 C6 SING N N 4 ZIE C4 C3 SING N N 5 ZIE C7 C6 SING N N 6 ZIE C7 O4 SING N N 7 ZIE C6 O5 SING N N 8 ZIE C3 N1 SING N N 9 ZIE C3 C8 SING N N 10 ZIE O5 C8 SING N N 11 ZIE N1 C2 SING N N 12 ZIE C8 O6 SING N N 13 ZIE C2 O1 DOUB N N 14 ZIE C2 C1 SING N N 15 ZIE O6 C9 SING N N 16 ZIE O7 C10 SING N N 17 ZIE C9 C10 SING N N 18 ZIE C9 C15 SING N N 19 ZIE C16 C15 SING N N 20 ZIE C16 O10 SING N N 21 ZIE C10 C11 SING N N 22 ZIE C15 O9 SING N N 23 ZIE O8 C12 DOUB N N 24 ZIE C11 N2 SING N N 25 ZIE C11 C14 SING N N 26 ZIE O9 C14 SING N N 27 ZIE C12 N2 SING N N 28 ZIE C12 C13 SING N N 29 ZIE C14 O11 SING N N 30 ZIE O11 C17 SING N N 31 ZIE C17 C22 DOUB Y N 32 ZIE C17 C18 SING Y N 33 ZIE C22 C21 SING Y N 34 ZIE C18 C19 DOUB Y N 35 ZIE C21 C20 DOUB Y N 36 ZIE C19 C20 SING Y N 37 ZIE C20 N3 SING N N 38 ZIE N3 O12 DOUB N N 39 ZIE N3 O13 SING N N 40 ZIE C1 H1 SING N N 41 ZIE C1 H2 SING N N 42 ZIE C1 H3 SING N N 43 ZIE C3 H4 SING N N 44 ZIE C4 H5 SING N N 45 ZIE C5 H6 SING N N 46 ZIE C7 H7 SING N N 47 ZIE C7 H8 SING N N 48 ZIE C9 H9 SING N N 49 ZIE C10 H10 SING N N 50 ZIE C13 H11 SING N N 51 ZIE C13 H12 SING N N 52 ZIE C13 H13 SING N N 53 ZIE C14 H14 SING N N 54 ZIE C15 H15 SING N N 55 ZIE C16 H16 SING N N 56 ZIE C16 H17 SING N N 57 ZIE C18 H18 SING N N 58 ZIE C19 H19 SING N N 59 ZIE C21 H20 SING N N 60 ZIE C22 H21 SING N N 61 ZIE N1 H22 SING N N 62 ZIE O2 H23 SING N N 63 ZIE O3 H24 SING N N 64 ZIE C6 H25 SING N N 65 ZIE O4 H26 SING N N 66 ZIE C8 H27 SING N N 67 ZIE O7 H28 SING N N 68 ZIE C11 H29 SING N N 69 ZIE N2 H30 SING N N 70 ZIE O10 H31 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZIE SMILES ACDLabs 12.01 "CC(=O)NC1C(O)C(O)C(CO)OC1OC1C(CO)OC(Oc2ccc(cc2)[N+]([O-])=O)C(NC(C)=O)C1O" ZIE InChI InChI 1.06 "InChI=1S/C22H31N3O13/c1-9(28)23-15-18(31)17(30)13(7-26)36-22(15)38-20-14(8-27)37-21(16(19(20)32)24-10(2)29)35-12-5-3-11(4-6-12)25(33)34/h3-6,13-22,26-27,30-32H,7-8H2,1-2H3,(H,23,28)(H,24,29)/t13-,14-,15-,16-,17-,18-,19-,20-,21-,22+/m1/s1" ZIE InChIKey InChI 1.06 HWBFEVWOQMUQIE-MVEDJEFUSA-N ZIE SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@@H](O[C@@H]2CO)Oc3ccc(cc3)[N+]([O-])=O" ZIE SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](NC(C)=O)[CH](O[CH]2CO)Oc3ccc(cc3)[N+]([O-])=O" ZIE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)NC(=O)C)Oc3ccc(cc3)[N+](=O)[O-])CO)CO)O)O" ZIE SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OC2C(OC(C(C2O)NC(=O)C)Oc3ccc(cc3)[N+](=O)[O-])CO)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZIE "SYSTEMATIC NAME" ACDLabs 12.01 "4-nitrophenyl 2-acetamido-4-O-(2-acetamido-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-beta-D-glucopyranoside" ZIE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZIE "Create component" 2023-03-13 RCSB ZIE "Initial release" 2023-05-24 RCSB #