data_ZIR # _chem_comp.id ZIR _chem_comp.name "N-(3-methylbut-2-en-1-yl)adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-23 _chem_comp.pdbx_modified_date 2012-05-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 335.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZIR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S1C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZIR N1 N1 N 0 1 Y N N -35.954 8.312 -2.629 2.408 -1.511 -1.009 N1 ZIR 1 ZIR C2 C2 C 0 1 Y N N -35.759 9.449 -2.061 1.328 -2.234 -1.242 C2 ZIR 2 ZIR N3 N3 N 0 1 Y N N -36.456 10.509 -2.442 0.112 -1.775 -1.034 N3 ZIR 3 ZIR C4 C4 C 0 1 Y N N -37.409 10.506 -3.377 -0.077 -0.543 -0.572 C4 ZIR 4 ZIR C5 C5 C 0 1 Y N N -37.662 9.312 -3.966 1.040 0.266 -0.308 C5 ZIR 5 ZIR C6 C6 C 0 1 Y N N -36.901 8.215 -3.564 2.318 -0.269 -0.546 C6 ZIR 6 ZIR N7 N7 N 0 1 Y N N -38.618 9.520 -4.854 0.574 1.454 0.146 N7 ZIR 7 ZIR C8 C8 C 0 1 Y N N -38.938 10.765 -4.791 -0.727 1.426 0.177 C8 ZIR 8 ZIR N9 N9 N 0 1 Y N N -38.213 11.402 -3.901 -1.177 0.215 -0.257 N9 ZIR 9 ZIR "C1'" "C1'" C 0 1 N N R -38.356 12.917 -3.546 -2.577 -0.201 -0.368 "C1'" ZIR 10 ZIR N10 N10 N 0 1 N N N -37.109 7.040 -4.075 3.455 0.481 -0.304 N10 ZIR 11 ZIR C11 C11 C 0 1 N N N -37.122 5.849 -3.251 4.779 -0.093 -0.558 C11 ZIR 12 ZIR C12 C12 C 0 1 N N N -37.923 4.851 -3.732 5.840 0.921 -0.216 C12 ZIR 13 ZIR C13 C13 C 0 1 N N N -37.837 3.575 -3.203 6.813 0.600 0.601 C13 ZIR 14 ZIR C14 C14 C 0 1 N N N -38.667 2.433 -3.738 7.776 1.657 1.078 C14 ZIR 15 ZIR C15 C15 C 0 1 N N N -36.817 3.376 -2.086 6.969 -0.826 1.064 C15 ZIR 16 ZIR "C2'" "C2'" C 0 1 N N R -38.156 14.028 -4.590 -3.035 -0.898 0.932 "C2'" ZIR 17 ZIR "O2'" "O2'" O 0 1 N N N -36.797 14.381 -4.619 -2.979 -2.318 0.786 "O2'" ZIR 18 ZIR "C3'" "C3'" C 0 1 N N S -39.088 15.172 -4.143 -4.497 -0.430 1.114 "C3'" ZIR 19 ZIR "O3'" "O3'" O 0 1 N N N -38.612 15.979 -3.074 -5.387 -1.546 1.086 "O3'" ZIR 20 ZIR "C4'" "C4'" C 0 1 N N R -40.258 14.385 -3.665 -4.748 0.495 -0.098 "C4'" ZIR 21 ZIR "O4'" "O4'" O 0 1 N N N -39.709 13.197 -3.092 -3.436 0.953 -0.491 "O4'" ZIR 22 ZIR "C5'" "C5'" C 0 1 N N N -41.110 14.080 -4.899 -5.627 1.679 0.309 "C5'" ZIR 23 ZIR "O5'" "O5'" O 0 1 N N N -42.319 14.863 -4.825 -5.943 2.457 -0.847 "O5'" ZIR 24 ZIR H2 H2 H 0 1 N N N -35.026 9.540 -1.273 1.447 -3.240 -1.618 H2 ZIR 25 ZIR H8 H8 H 0 1 N N N -39.706 11.227 -5.394 -1.357 2.242 0.498 H8 ZIR 26 ZIR "H1'" "H1'" H 0 1 N N N -37.514 12.982 -2.841 -2.709 -0.865 -1.223 "H1'" ZIR 27 ZIR HN10 HN10 H 0 0 N N N -38.014 7.086 -4.497 3.376 1.387 0.034 HN10 ZIR 28 ZIR H11 H11 H 0 1 N N N -36.094 5.463 -3.195 4.914 -0.982 0.057 H11 ZIR 29 ZIR H11A H11A H 0 0 N N N -37.490 6.130 -2.253 4.861 -0.363 -1.611 H11A ZIR 30 ZIR H12 H12 H 0 1 N N N -38.624 5.059 -4.527 5.799 1.911 -0.644 H12 ZIR 31 ZIR H14 H14 H 0 1 N N N -38.439 1.517 -3.173 7.398 2.105 1.996 H14 ZIR 32 ZIR H14A H14A H 0 0 N N N -39.735 2.674 -3.630 8.748 1.202 1.269 H14A ZIR 33 ZIR H14B H14B H 0 0 N N N -38.432 2.276 -4.801 7.879 2.426 0.313 H14B ZIR 34 ZIR H15 H15 H 0 1 N N N -36.841 2.329 -1.749 6.249 -1.457 0.544 H15 ZIR 35 ZIR H15A H15A H 0 0 N N N -35.811 3.618 -2.461 7.979 -1.171 0.845 H15A ZIR 36 ZIR H15B H15B H 0 0 N N N -37.063 4.038 -1.243 6.792 -0.880 2.138 H15B ZIR 37 ZIR "H2'" "H2'" H 0 1 N N N -38.409 13.734 -5.619 -2.423 -0.575 1.775 "H2'" ZIR 38 ZIR "HO2'" "HO2'" H 0 0 N N N -36.661 15.068 -5.261 -3.257 -2.806 1.573 "HO2'" ZIR 39 ZIR "H3'" "H3'" H 0 1 N N N -39.247 15.899 -4.953 -4.607 0.124 2.046 "H3'" ZIR 40 ZIR "HO3'" "HO3'" H 0 0 N N N -39.253 16.651 -2.874 -6.319 -1.309 1.196 "HO3'" ZIR 41 ZIR "H4'" "H4'" H 0 1 N N N -40.885 14.899 -2.922 -5.214 -0.063 -0.910 "H4'" ZIR 42 ZIR "H5'" "H5'" H 0 1 N N N -40.552 14.341 -5.811 -6.547 1.311 0.762 "H5'" ZIR 43 ZIR "H5'A" "H5'A" H 0 0 N N N -41.360 13.009 -4.923 -5.091 2.299 1.028 "H5'A" ZIR 44 ZIR "HO5'" "HO5'" H 0 0 N N N -42.860 14.684 -5.586 -6.499 3.227 -0.664 "HO5'" ZIR 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZIR C6 N1 DOUB Y N 1 ZIR N1 C2 SING Y N 2 ZIR N3 C2 DOUB Y N 3 ZIR C2 H2 SING N N 4 ZIR C4 N3 SING Y N 5 ZIR C5 C4 DOUB Y N 6 ZIR N9 C4 SING Y N 7 ZIR N7 C5 SING Y N 8 ZIR C5 C6 SING Y N 9 ZIR N10 C6 SING N N 10 ZIR N7 C8 DOUB Y N 11 ZIR C8 N9 SING Y N 12 ZIR C8 H8 SING N N 13 ZIR N9 "C1'" SING N N 14 ZIR "C2'" "C1'" SING N N 15 ZIR "C1'" "O4'" SING N N 16 ZIR "C1'" "H1'" SING N N 17 ZIR N10 C11 SING N N 18 ZIR N10 HN10 SING N N 19 ZIR C12 C11 SING N N 20 ZIR C11 H11 SING N N 21 ZIR C11 H11A SING N N 22 ZIR C12 C13 DOUB N N 23 ZIR C12 H12 SING N N 24 ZIR C14 C13 SING N N 25 ZIR C13 C15 SING N N 26 ZIR C14 H14 SING N N 27 ZIR C14 H14A SING N N 28 ZIR C14 H14B SING N N 29 ZIR C15 H15 SING N N 30 ZIR C15 H15A SING N N 31 ZIR C15 H15B SING N N 32 ZIR "O2'" "C2'" SING N N 33 ZIR "C2'" "C3'" SING N N 34 ZIR "C2'" "H2'" SING N N 35 ZIR "O2'" "HO2'" SING N N 36 ZIR "C3'" "C4'" SING N N 37 ZIR "C3'" "O3'" SING N N 38 ZIR "C3'" "H3'" SING N N 39 ZIR "O3'" "HO3'" SING N N 40 ZIR "C5'" "C4'" SING N N 41 ZIR "C4'" "O4'" SING N N 42 ZIR "C4'" "H4'" SING N N 43 ZIR "C5'" "O5'" SING N N 44 ZIR "C5'" "H5'" SING N N 45 ZIR "C5'" "H5'A" SING N N 46 ZIR "O5'" "HO5'" SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZIR SMILES ACDLabs 12.01 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)NC\C=C(/C)C" ZIR SMILES_CANONICAL CACTVS 3.370 "CC(C)=CCNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" ZIR SMILES CACTVS 3.370 "CC(C)=CCNc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O" ZIR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(=CCNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)C" ZIR SMILES "OpenEye OEToolkits" 1.7.2 "CC(=CCNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)O)O)C" ZIR InChI InChI 1.03 "InChI=1S/C15H21N5O4/c1-8(2)3-4-16-13-10-14(18-6-17-13)20(7-19-10)15-12(23)11(22)9(5-21)24-15/h3,6-7,9,11-12,15,21-23H,4-5H2,1-2H3,(H,16,17,18)/t9-,11-,12-,15-/m1/s1" ZIR InChIKey InChI 1.03 USVMJSALORZVDV-SDBHATRESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZIR "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-methylbut-2-en-1-yl)adenosine" ZIR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(3-methylbut-2-enylamino)purin-9-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZIR "Create component" 2011-05-23 RCSB ZIR "Modify aromatic_flag" 2011-06-04 RCSB ZIR "Modify descriptor" 2011-06-04 RCSB #