data_ZIV # _chem_comp.id ZIV _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[2-azanyl-9-[(2~{R},3~{R},4~{R},5~{R})-5-[bis(oxidanyl)phosphanyloxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-6-oxidanylidene-3~{H}-purin-7-yl]ethyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H39 N12 O12 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-03-13 _chem_comp.pdbx_modified_date 2023-04-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 742.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZIV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8GHU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZIV C02 C1 C 0 1 N N N 179.738 166.341 119.044 ? ? ? C02 ZIV 1 ZIV C03 C2 C 0 1 N N N 178.309 166.031 118.769 ? ? ? C03 ZIV 2 ZIV C05 C3 C 0 1 N N N 178.211 164.593 116.559 ? ? ? C05 ZIV 3 ZIV C06 C4 C 0 1 N N N 177.124 164.709 115.471 ? ? ? C06 ZIV 4 ZIV C08 C5 C 0 1 N N N 176.880 167.313 115.170 ? ? ? C08 ZIV 5 ZIV C09 C6 C 0 1 N N N 177.431 168.396 114.214 ? ? ? C09 ZIV 6 ZIV C10 C7 C 0 1 N N S 178.212 169.554 114.854 ? ? ? C10 ZIV 7 ZIV C12 C8 C 0 1 N N N 179.602 169.839 114.287 ? ? ? C12 ZIV 8 ZIV C15 C9 C 0 1 N N N 177.711 165.830 113.406 ? ? ? C15 ZIV 9 ZIV C16 C10 C 0 1 N N R 176.964 165.398 112.146 ? ? ? C16 ZIV 10 ZIV C17 C11 C 0 1 N N S 175.345 165.510 112.223 ? ? ? C17 ZIV 11 ZIV C19 C12 C 0 1 N N R 174.876 164.692 111.358 ? ? ? C19 ZIV 12 ZIV C21 C13 C 0 1 N N R 176.070 163.762 110.971 ? ? ? C21 ZIV 13 ZIV C23 C14 C 0 1 Y N N 176.282 161.445 110.281 ? ? ? C23 ZIV 14 ZIV C25 C15 C 0 1 Y N N 177.297 160.470 108.439 ? ? ? C25 ZIV 15 ZIV C27 C16 C 0 1 Y N N 176.278 159.101 109.987 ? ? ? C27 ZIV 16 ZIV C29 C17 C 0 1 Y N N 175.908 160.235 110.757 ? ? ? C29 ZIV 17 ZIV C31 C18 C 0 1 Y N N 175.194 161.750 112.166 ? ? ? C31 ZIV 18 ZIV C33 C19 C 0 1 N N N 176.226 165.320 118.013 ? ? ? C33 ZIV 19 ZIV C35 C20 C 0 1 N N R 174.613 166.287 119.749 ? ? ? C35 ZIV 20 ZIV C37 C21 C 0 1 N N R 173.157 166.337 121.414 ? ? ? C37 ZIV 21 ZIV C38 C22 C 0 1 N N N 172.421 166.893 122.612 ? ? ? C38 ZIV 22 ZIV C43 C23 C 0 1 N N R 173.949 164.994 121.618 ? ? ? C43 ZIV 23 ZIV C45 C24 C 0 1 N N R 174.490 164.992 120.184 ? ? ? C45 ZIV 24 ZIV C47 C25 C 0 1 N N N 177.279 166.545 119.677 ? ? ? C47 ZIV 25 ZIV C49 C26 C 0 1 N N N 179.156 167.650 121.091 ? ? ? C49 ZIV 26 ZIV N04 N1 N 0 1 N N N 177.645 165.263 117.733 ? ? ? N04 ZIV 27 ZIV N07 N2 N 0 1 N N N 176.916 165.929 114.607 ? ? ? N07 ZIV 28 ZIV N11 N3 N 0 1 N N N 177.512 170.784 114.644 ? ? ? N11 ZIV 29 ZIV N22 N4 N 0 1 Y N N 175.818 162.360 111.156 ? ? ? N22 ZIV 30 ZIV N24 N5 N 0 1 Y N N 176.975 161.557 109.115 ? ? ? N24 ZIV 31 ZIV N26 N6 N 0 1 Y N N 176.957 159.267 108.864 ? ? ? N26 ZIV 32 ZIV N28 N7 N 0 1 N N N 175.908 157.778 110.443 ? ? ? N28 ZIV 33 ZIV N30 N8 N 0 1 Y N N 175.235 160.431 111.921 ? ? ? N30 ZIV 34 ZIV N34 N9 N 0 1 N N N 175.967 166.094 119.211 ? ? ? N34 ZIV 35 ZIV N48 N10 N 0 1 N N N 177.743 167.360 120.783 ? ? ? N48 ZIV 36 ZIV N50 N11 N 0 1 N N N 179.521 168.455 122.245 ? ? ? N50 ZIV 37 ZIV N51 N12 N 0 1 N N N 180.176 167.135 120.173 ? ? ? N51 ZIV 38 ZIV O01 O1 O 0 1 N N N 180.539 165.916 118.314 ? ? ? O01 ZIV 39 ZIV O13 O2 O 0 1 N N N 180.185 170.910 114.568 ? ? ? O13 ZIV 40 ZIV O14 O3 O 0 1 N N N 180.196 169.027 113.550 ? ? ? O14 ZIV 41 ZIV O18 O4 O 0 1 N N N 174.928 166.808 111.919 ? ? ? O18 ZIV 42 ZIV O20 O5 O 0 1 N N N 174.500 165.456 110.250 ? ? ? O20 ZIV 43 ZIV "O3'" O6 O 0 1 N N N 175.048 165.007 122.647 ? ? ? "O3'" ZIV 44 ZIV O32 O7 O 0 1 N N N 177.290 164.208 111.777 ? ? ? O32 ZIV 45 ZIV O36 O8 O 0 1 N N N 174.045 167.164 120.961 ? ? ? O36 ZIV 46 ZIV O39 O9 O 0 1 N N N 173.009 168.137 122.823 ? ? ? O39 ZIV 47 ZIV O41 O10 O 0 1 N N N 172.231 168.813 125.044 ? ? ? O41 ZIV 48 ZIV O42 O11 O -1 1 N N N 173.589 166.858 124.847 ? ? ? O42 ZIV 49 ZIV O46 O12 O 0 1 N N N 173.519 164.337 119.414 ? ? ? O46 ZIV 50 ZIV P P1 P 0 1 N N N 173.489 168.302 124.372 ? ? ? P ZIV 51 ZIV H1 H1 H 0 1 N N N 178.424 163.537 116.782 ? ? ? H1 ZIV 52 ZIV H2 H2 H 0 1 N N N 179.136 165.094 116.237 ? ? ? H2 ZIV 53 ZIV H3 H3 H 0 1 N N N 176.167 164.544 115.988 ? ? ? H3 ZIV 54 ZIV H4 H4 H 0 1 N N N 177.312 163.879 114.774 ? ? ? H4 ZIV 55 ZIV H5 H5 H 0 1 N N N 177.481 167.327 116.091 ? ? ? H5 ZIV 56 ZIV H6 H6 H 0 1 N N N 175.836 167.562 115.409 ? ? ? H6 ZIV 57 ZIV H7 H7 H 0 1 N N N 176.576 168.830 113.675 ? ? ? H7 ZIV 58 ZIV H8 H8 H 0 1 N N N 178.102 167.898 113.498 ? ? ? H8 ZIV 59 ZIV H9 H9 H 0 1 N N N 178.307 169.357 115.932 ? ? ? H9 ZIV 60 ZIV H10 H10 H 0 1 N N N 178.511 165.098 113.591 ? ? ? H10 ZIV 61 ZIV H11 H11 H 0 1 N N N 178.155 166.818 113.213 ? ? ? H11 ZIV 62 ZIV H12 H12 H 0 1 N N N 177.260 166.109 111.361 ? ? ? H12 ZIV 63 ZIV H13 H13 H 0 1 N N N 175.047 165.245 113.248 ? ? ? H13 ZIV 64 ZIV H14 H14 H 0 1 N N N 174.043 164.079 111.732 ? ? ? H14 ZIV 65 ZIV H15 H15 H 0 1 N N N 176.291 163.943 109.909 ? ? ? H15 ZIV 66 ZIV H16 H16 H 0 1 N N N 177.851 160.567 107.517 ? ? ? H16 ZIV 67 ZIV H17 H17 H 0 1 N N N 174.740 162.229 113.021 ? ? ? H17 ZIV 68 ZIV H18 H18 H 0 1 N N N 175.709 165.789 117.162 ? ? ? H18 ZIV 69 ZIV H19 H19 H 0 1 N N N 173.932 166.451 118.901 ? ? ? H19 ZIV 70 ZIV H20 H20 H 0 1 N N N 172.403 166.136 120.639 ? ? ? H20 ZIV 71 ZIV H21 H21 H 0 1 N N N 171.348 167.000 122.396 ? ? ? H21 ZIV 72 ZIV H22 H22 H 0 1 N N N 172.556 166.243 123.489 ? ? ? H22 ZIV 73 ZIV H23 H23 H 0 1 N N N 173.254 164.157 121.780 ? ? ? H23 ZIV 74 ZIV H24 H24 H 0 1 N N N 175.451 164.458 120.156 ? ? ? H24 ZIV 75 ZIV H26 H26 H 0 1 N N N 178.024 171.535 115.062 ? ? ? H26 ZIV 76 ZIV H27 H27 H 0 1 N N N 177.418 170.951 113.662 ? ? ? H27 ZIV 77 ZIV H29 H29 H 0 1 N N N 176.242 157.095 109.793 ? ? ? H29 ZIV 78 ZIV H30 H30 H 0 1 N N N 176.314 157.610 111.341 ? ? ? H30 ZIV 79 ZIV H31 H31 H 0 1 N N N 177.050 167.757 121.385 ? ? ? H31 ZIV 80 ZIV H32 H32 H 0 1 N N N 180.482 168.666 122.424 ? ? ? H32 ZIV 81 ZIV H33 H33 H 0 1 N N N 178.811 168.798 122.860 ? ? ? H33 ZIV 82 ZIV H34 H34 H 0 1 N N N 181.036 170.928 114.147 ? ? ? H34 ZIV 83 ZIV H35 H35 H 0 1 N N N 175.278 167.412 112.563 ? ? ? H35 ZIV 84 ZIV H36 H36 H 0 1 N N N 173.774 166.021 110.486 ? ? ? H36 ZIV 85 ZIV H37 H37 H 0 1 N N N 174.667 165.008 123.517 ? ? ? H37 ZIV 86 ZIV H39 H39 H 0 1 N N N 173.867 166.841 125.755 ? ? ? H39 ZIV 87 ZIV H40 H40 H 0 1 N N N 173.430 163.439 119.712 ? ? ? H40 ZIV 88 ZIV H25 H25 H 0 1 N N N 175.845 164.298 118.155 ? ? ? H25 ZIV 89 ZIV H28 H28 H 0 1 N N N 174.655 169.095 124.539 ? ? ? H28 ZIV 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZIV C25 N26 DOUB Y N 1 ZIV C25 N24 SING Y N 2 ZIV N26 C27 SING Y N 3 ZIV N24 C23 DOUB Y N 4 ZIV C27 N28 SING N N 5 ZIV C27 C29 DOUB Y N 6 ZIV O20 C19 SING N N 7 ZIV C23 C29 SING Y N 8 ZIV C23 N22 SING Y N 9 ZIV C29 N30 SING Y N 10 ZIV C21 N22 SING N N 11 ZIV C21 C19 SING N N 12 ZIV C21 O32 SING N N 13 ZIV N22 C31 SING Y N 14 ZIV C19 C17 SING N N 15 ZIV O32 C16 SING N N 16 ZIV O18 C17 SING N N 17 ZIV N30 C31 DOUB Y N 18 ZIV C16 C17 SING N N 19 ZIV C16 C15 SING N N 20 ZIV C15 N07 SING N N 21 ZIV O14 C12 DOUB N N 22 ZIV C09 C10 SING N N 23 ZIV C09 C08 SING N N 24 ZIV C12 O13 SING N N 25 ZIV C12 C10 SING N N 26 ZIV N07 C08 SING N N 27 ZIV N07 C06 SING N N 28 ZIV N11 C10 SING N N 29 ZIV C06 C05 SING N N 30 ZIV C05 N04 SING N N 31 ZIV N04 C33 SING N N 32 ZIV N04 C03 SING N N 33 ZIV C33 N34 SING N N 34 ZIV O01 C02 DOUB N N 35 ZIV C03 C02 SING N N 36 ZIV C03 C47 DOUB N N 37 ZIV C02 N51 SING N N 38 ZIV N34 C47 SING N N 39 ZIV N34 C35 SING N N 40 ZIV O46 C45 SING N N 41 ZIV C47 N48 SING N N 42 ZIV C35 C45 SING N N 43 ZIV C35 O36 SING N N 44 ZIV N51 C49 DOUB N N 45 ZIV C45 C43 SING N N 46 ZIV N48 C49 SING N N 47 ZIV O36 C37 SING N N 48 ZIV C49 N50 SING N N 49 ZIV C37 C43 SING N N 50 ZIV C37 C38 SING N N 51 ZIV C43 "O3'" SING N N 52 ZIV C38 O39 SING N N 53 ZIV O39 P SING N N 54 ZIV P O42 SING N N 55 ZIV P O41 DOUB N N 56 ZIV C05 H1 SING N N 57 ZIV C05 H2 SING N N 58 ZIV C06 H3 SING N N 59 ZIV C06 H4 SING N N 60 ZIV C08 H5 SING N N 61 ZIV C08 H6 SING N N 62 ZIV C09 H7 SING N N 63 ZIV C09 H8 SING N N 64 ZIV C10 H9 SING N N 65 ZIV C15 H10 SING N N 66 ZIV C15 H11 SING N N 67 ZIV C16 H12 SING N N 68 ZIV C17 H13 SING N N 69 ZIV C19 H14 SING N N 70 ZIV C21 H15 SING N N 71 ZIV C25 H16 SING N N 72 ZIV C31 H17 SING N N 73 ZIV C33 H18 SING N N 74 ZIV C35 H19 SING N N 75 ZIV C37 H20 SING N N 76 ZIV C38 H21 SING N N 77 ZIV C38 H22 SING N N 78 ZIV C43 H23 SING N N 79 ZIV C45 H24 SING N N 80 ZIV N11 H26 SING N N 81 ZIV N11 H27 SING N N 82 ZIV N28 H29 SING N N 83 ZIV N28 H30 SING N N 84 ZIV N48 H31 SING N N 85 ZIV N50 H32 SING N N 86 ZIV N50 H33 SING N N 87 ZIV O13 H34 SING N N 88 ZIV O18 H35 SING N N 89 ZIV O20 H36 SING N N 90 ZIV "O3'" H37 SING N N 91 ZIV O42 H39 SING N N 92 ZIV O46 H40 SING N N 93 ZIV C33 H25 SING N N 94 ZIV P H28 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZIV SMILES ACDLabs 12.01 "O=C(O)C(N)CCN(CC1OC(n2cnc3c(N)ncnc32)C(O)C1O)CCN1CN(C2OC(COP(O)O)C(O)C2O)C=2NC(N)=NC(=O)C1=2" ZIV InChI InChI 1.06 "InChI=1S/C26H39N12O12P/c27-10(25(44)45)1-2-35(5-11-15(39)17(41)23(49-11)37-8-32-13-19(28)30-7-31-20(13)37)3-4-36-9-38(21-14(36)22(43)34-26(29)33-21)24-18(42)16(40)12(50-24)6-48-51(46)47/h7-8,10-12,15-18,23-24,39-42,46,51H,1-6,9,27H2,(H,44,45)(H2,28,30,31)(H3,29,33,34,43)/q-1/t10-,11+,12+,15+,16-,17+,18+,23+,24+/m0/s1" ZIV InChIKey InChI 1.06 QKJZWHZELYFDJK-PBBDAFOISA-N ZIV SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CCN1CN([C@@H]2O[C@H](CO[PH]([OH-])=O)[C@H](O)[C@H]2O)C3=C1C(=O)N=C(N)N3)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(O)=O" ZIV SMILES CACTVS 3.385 "N[CH](CCN(CCN1CN([CH]2O[CH](CO[PH]([OH-])=O)[CH](O)[CH]2O)C3=C1C(=O)N=C(N)N3)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(O)=O" ZIV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)O)N)CCN4CN(C5=C4C(=O)N=C(N5)N)[C@H]6[C@@H]([C@H]([C@H](O6)COP(=O)[OH-])O)O)O)O)N" ZIV SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)O)N)CCN4CN(C5=C4C(=O)N=C(N5)N)C6C(C(C(O6)COP(=O)[OH-])O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZIV "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-4-[(2-{2-amino-9-[(2R,3R,4R,5R)-5-{[(dihydroxyphosphanyl)oxy]methyl}-3,4-dihydroxyoxolan-2-yl]-6-oxo-3,6,8,9-tetrahydro-7H-purin-7-yl}ethyl){[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}amino]butanoic acid (non-preferred name)" ZIV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[2-azanyl-9-[(2~{R},3~{R},4~{R},5~{R})-5-[bis(oxidanyl)phosphanyloxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-6-oxidanylidene-3,8-dihydropurin-7-yl]ethyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZIV "Create component" 2023-03-13 RCSB ZIV "Initial release" 2023-04-12 RCSB #