data_ZJK # _chem_comp.id ZJK _chem_comp.name "1-oxidanyl-6,8,9,11-tetraphenyl-2,4-dioxa-6,8,9,11-tetraza-1$l^{5},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 N4 O3 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-27 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 657.668 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZJK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZJK RU1 RU1 RU 0 0 N N N 1.181 -23.906 15.871 -1.222 -0.293 0.025 RU1 ZJK 1 ZJK RU2 RU2 RU 0 0 N N N -0.017 -25.348 14.484 0.704 0.733 -1.121 RU2 ZJK 2 ZJK O1 O1 O 0 1 N N N -1.081 -23.736 13.726 -0.161 -0.215 -2.457 O1 ZJK 3 ZJK O2 O2 O 0 1 N N N 0.161 -22.328 14.945 -2.223 -0.902 -1.360 O2 ZJK 4 ZJK N1 N1 N 0 1 N N N 1.047 -26.957 15.150 0.544 1.669 0.577 N1 ZJK 5 ZJK N4 N2 N 0 1 N N N -1.355 -25.532 16.015 1.741 -0.759 -0.476 N4 ZJK 6 ZJK N3 N3 N 0 1 N N N -0.154 -24.124 17.406 -0.271 -1.637 1.031 N3 ZJK 7 ZJK N2 N4 N 0 1 N N N 2.292 -25.502 16.471 -1.887 1.156 1.073 N2 ZJK 8 ZJK C1 C1 C 0 1 Y N N -2.571 -26.254 15.785 3.131 -0.914 -0.687 C1 ZJK 9 ZJK C2 C2 C 0 1 Y N N -0.327 -23.817 19.903 -1.234 -3.485 -0.187 C2 ZJK 10 ZJK C3 C3 C 0 1 Y N N -0.209 -23.321 18.604 -0.964 -2.850 1.019 C3 ZJK 11 ZJK C4 C4 C 0 1 Y N N -3.536 -25.895 14.857 3.829 0.019 -1.443 C4 ZJK 12 ZJK C5 C5 C 0 1 Y N N 0.972 -28.269 14.596 1.618 1.863 1.469 C5 ZJK 13 ZJK C6 C6 C 0 1 Y N N -4.957 -27.813 15.368 5.850 -1.217 -1.099 C6 ZJK 14 ZJK C7 C7 C 0 1 Y N N -0.187 -21.946 18.468 -1.384 -3.424 2.212 C7 ZJK 15 ZJK C8 C8 C 0 1 N N N -0.775 -22.601 14.154 -1.580 -0.123 -2.436 C8 ZJK 16 ZJK C9 C9 C 0 1 Y N N 3.364 -25.347 17.395 -3.102 1.626 0.569 C9 ZJK 17 ZJK C10 C10 C 0 1 Y N N -0.240 -21.094 19.558 -2.069 -4.623 2.196 C10 ZJK 18 ZJK C11 C11 C 0 1 Y N N -2.845 -27.442 16.427 3.803 -1.996 -0.133 C11 ZJK 19 ZJK C12 C12 C 0 1 Y N N -4.678 -26.658 14.683 5.186 -0.135 -1.647 C12 ZJK 20 ZJK C13 C13 C 0 1 N N N 2.046 -26.690 15.965 -0.798 2.167 0.867 C13 ZJK 21 ZJK C14 C14 C 0 1 Y N N -0.294 -21.568 20.840 -2.336 -5.253 0.995 C14 ZJK 22 ZJK C15 C15 C 0 1 Y N N 2.127 -28.930 14.210 2.826 2.368 1.005 C15 ZJK 23 ZJK C16 C16 C 0 1 N N N -1.241 -24.801 17.127 1.001 -1.767 0.269 C16 ZJK 24 ZJK C17 C17 C 0 1 Y N N -3.993 -28.187 16.253 5.160 -2.145 -0.340 C17 ZJK 25 ZJK C18 C18 C 0 1 Y N N -0.358 -22.933 20.980 -1.919 -4.685 -0.195 C18 ZJK 26 ZJK C20 C19 C 0 1 Y N N -0.208 -28.948 14.412 1.469 1.555 2.816 C20 ZJK 27 ZJK C21 C20 C 0 1 Y N N 3.027 -25.120 18.710 -4.030 0.734 0.046 C21 ZJK 28 ZJK C23 C21 C 0 1 Y N N 4.703 -25.443 17.090 -3.387 2.985 0.594 C23 ZJK 29 ZJK C25 C22 C 0 1 Y N N 2.097 -30.220 13.663 3.876 2.557 1.882 C25 ZJK 30 ZJK C26 C23 C 0 1 Y N N -0.224 -30.238 13.892 2.523 1.747 3.687 C26 ZJK 31 ZJK C27 C24 C 0 1 Y N N 5.655 -25.307 18.101 -4.589 3.446 0.095 C27 ZJK 32 ZJK C28 C25 C 0 1 Y N N 3.989 -24.998 19.683 -5.231 1.202 -0.451 C28 ZJK 33 ZJK C29 C26 C 0 1 Y N N 0.909 -30.875 13.491 3.727 2.244 3.221 C29 ZJK 34 ZJK C30 C27 C 0 1 Y N N 5.320 -25.049 19.414 -5.509 2.557 -0.429 C30 ZJK 35 ZJK O5 O3 O 0 1 N N N -1.255 -26.342 12.718 0.790 2.259 -2.081 O5 ZJK 36 ZJK H1 H1 H 0 1 N N N -0.394 -24.881 20.073 -0.913 -3.040 -1.117 H1 ZJK 37 ZJK H2 H2 H 0 1 N N N -3.395 -25.006 14.260 3.310 0.864 -1.872 H2 ZJK 38 ZJK H3 H3 H 0 1 N N N -5.865 -28.378 15.218 6.912 -1.335 -1.259 H3 ZJK 39 ZJK H4 H4 H 0 1 N N N -0.126 -21.521 17.477 -1.175 -2.932 3.151 H4 ZJK 40 ZJK H5 H5 H 0 1 N N N -0.573 -22.001 13.254 -1.860 0.930 -2.322 H5 ZJK 41 ZJK H6 H6 H 0 1 N N N -1.684 -22.227 14.647 -1.966 -0.474 -3.401 H6 ZJK 42 ZJK H7 H7 H 0 1 N N N -0.239 -20.027 19.392 -2.396 -5.069 3.124 H7 ZJK 43 ZJK H8 H8 H 0 1 N N N -2.105 -27.818 17.118 3.264 -2.721 0.459 H8 ZJK 44 ZJK H9 H9 H 0 1 N N N -5.401 -26.319 13.956 5.729 0.590 -2.235 H9 ZJK 45 ZJK H10 H10 H 0 1 N N N 1.911 -27.358 16.828 -0.728 2.786 1.772 H10 ZJK 46 ZJK H11 H11 H 0 1 N N N 2.958 -26.975 15.420 -1.091 2.828 0.040 H11 ZJK 47 ZJK H12 H12 H 0 1 N N N -0.287 -20.907 21.694 -2.871 -6.191 0.985 H12 ZJK 48 ZJK H13 H13 H 0 1 N N N 3.079 -28.436 14.334 2.944 2.613 -0.040 H13 ZJK 49 ZJK H14 H14 H 0 1 N N N -2.061 -24.068 17.099 0.835 -2.590 -0.456 H14 ZJK 50 ZJK H15 H15 H 0 1 N N N -1.396 -25.493 17.968 1.739 -2.177 0.991 H15 ZJK 51 ZJK H16 H16 H 0 1 N N N -4.130 -29.088 16.833 5.682 -2.988 0.086 H16 ZJK 52 ZJK H17 H17 H 0 1 N N N -0.436 -23.342 21.976 -2.133 -5.177 -1.132 H17 ZJK 53 ZJK H18 H18 H 0 1 N N N -1.140 -28.471 14.676 0.530 1.167 3.181 H18 ZJK 54 ZJK H19 H19 H 0 1 N N N 1.985 -25.036 18.982 -3.814 -0.324 0.029 H19 ZJK 55 ZJK H20 H20 H 0 1 N N N 5.015 -25.623 16.072 -2.669 3.680 1.004 H20 ZJK 56 ZJK H21 H21 H 0 1 N N N 3.020 -30.701 13.375 4.816 2.950 1.522 H21 ZJK 57 ZJK H22 H22 H 0 1 N N N -1.170 -30.752 13.803 2.408 1.508 4.734 H22 ZJK 58 ZJK H23 H23 H 0 1 N N N 6.699 -25.408 17.844 -4.811 4.503 0.114 H23 ZJK 59 ZJK H24 H24 H 0 1 N N N 3.674 -24.855 20.706 -5.953 0.510 -0.858 H24 ZJK 60 ZJK H25 H25 H 0 1 N N N 0.872 -31.861 13.053 4.549 2.392 3.904 H25 ZJK 61 ZJK H26 H26 H 0 1 N N N 6.067 -24.897 20.179 -6.449 2.920 -0.818 H26 ZJK 62 ZJK H27 H27 H 0 1 N N N -1.052 -27.269 12.671 1.688 2.593 -2.208 H27 ZJK 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZJK O5 RU2 SING N N 1 ZJK C29 C25 DOUB Y N 2 ZJK C29 C26 SING Y N 3 ZJK C25 C15 SING Y N 4 ZJK O1 C8 SING N N 5 ZJK O1 RU2 SING N N 6 ZJK C26 C20 DOUB Y N 7 ZJK C8 O2 SING N N 8 ZJK C15 C5 DOUB Y N 9 ZJK C20 C5 SING Y N 10 ZJK RU2 N1 SING N N 11 ZJK RU2 RU1 SING N N 12 ZJK RU2 N4 SING N N 13 ZJK C5 N1 SING N N 14 ZJK C12 C4 DOUB Y N 15 ZJK C12 C6 SING Y N 16 ZJK C4 C1 SING Y N 17 ZJK O2 RU1 SING N N 18 ZJK N1 C13 SING N N 19 ZJK C6 C17 DOUB Y N 20 ZJK C1 N4 SING N N 21 ZJK C1 C11 DOUB Y N 22 ZJK RU1 N2 SING N N 23 ZJK RU1 N3 SING N N 24 ZJK C13 N2 SING N N 25 ZJK N4 C16 SING N N 26 ZJK C17 C11 SING Y N 27 ZJK N2 C9 SING N N 28 ZJK C23 C9 DOUB Y N 29 ZJK C23 C27 SING Y N 30 ZJK C16 N3 SING N N 31 ZJK C9 C21 SING Y N 32 ZJK N3 C3 SING N N 33 ZJK C27 C30 DOUB Y N 34 ZJK C7 C3 DOUB Y N 35 ZJK C7 C10 SING Y N 36 ZJK C3 C2 SING Y N 37 ZJK C21 C28 DOUB Y N 38 ZJK C30 C28 SING Y N 39 ZJK C10 C14 DOUB Y N 40 ZJK C2 C18 DOUB Y N 41 ZJK C14 C18 SING Y N 42 ZJK C2 H1 SING N N 43 ZJK C4 H2 SING N N 44 ZJK C6 H3 SING N N 45 ZJK C7 H4 SING N N 46 ZJK C8 H5 SING N N 47 ZJK C8 H6 SING N N 48 ZJK C10 H7 SING N N 49 ZJK C11 H8 SING N N 50 ZJK C12 H9 SING N N 51 ZJK C13 H10 SING N N 52 ZJK C13 H11 SING N N 53 ZJK C14 H12 SING N N 54 ZJK C15 H13 SING N N 55 ZJK C16 H14 SING N N 56 ZJK C16 H15 SING N N 57 ZJK C17 H16 SING N N 58 ZJK C18 H17 SING N N 59 ZJK C20 H18 SING N N 60 ZJK C21 H19 SING N N 61 ZJK C23 H20 SING N N 62 ZJK C25 H21 SING N N 63 ZJK C26 H22 SING N N 64 ZJK C27 H23 SING N N 65 ZJK C28 H24 SING N N 66 ZJK C29 H25 SING N N 67 ZJK C30 H26 SING N N 68 ZJK O5 H27 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZJK InChI InChI 1.06 "InChI=1S/2C13H12N2.CH2O2.H2O.2Ru/c2*1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2-1-3;;;/h2*1-10H,11H2;1H2;1H2;;/q3*-2;;+3;+4/p-1" ZJK InChIKey InChI 1.06 CVAAOOFKUNUXPY-UHFFFAOYSA-M ZJK SMILES_CANONICAL CACTVS 3.385 "O[Ru]12OCO[Ru](N(CN1c3ccccc3)c4ccccc4)N(CN2c5ccccc5)c6ccccc6" ZJK SMILES CACTVS 3.385 "O[Ru]12OCO[Ru](N(CN1c3ccccc3)c4ccccc4)N(CN2c5ccccc5)c6ccccc6" ZJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]34([Ru]2(N(CN3c5ccccc5)c6ccccc6)OCO4)O)c7ccccc7" ZJK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]34([Ru]2(N(CN3c5ccccc5)c6ccccc6)OCO4)O)c7ccccc7" # _pdbx_chem_comp_identifier.comp_id ZJK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-oxidanyl-6,8,9,11-tetraphenyl-2,4-dioxa-6,8,9,11-tetraza-1$l^{5},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZJK "Create component" 2023-06-27 PDBE ZJK "Initial release" 2023-09-13 RCSB #