data_ZJO # _chem_comp.id ZJO _chem_comp.name "1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 N4 O Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-27 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 611.643 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZJO RU1 RU1 RU 0 0 N N N 2.514 -27.121 16.371 -1.106 -0.250 -0.013 RU1 ZJO 1 ZJO RU2 RU2 RU 0 0 N N N 2.467 -28.485 18.217 1.148 0.536 0.894 RU2 ZJO 2 ZJO N1 N1 N 0 1 N N N 2.768 -26.874 19.442 1.928 -0.697 -0.382 N1 ZJO 3 ZJO N4 N2 N 0 1 N N N 0.415 -28.372 18.187 0.589 2.332 0.438 N4 ZJO 4 ZJO N3 N3 N 0 1 N N N 0.466 -27.044 16.313 -2.043 1.360 0.174 N3 ZJO 5 ZJO N2 N4 N 0 1 N N N 2.706 -25.489 17.629 -0.593 -1.970 -0.538 N2 ZJO 6 ZJO C1 C1 C 0 1 Y N N -0.333 -28.700 19.357 1.373 2.853 -0.593 C1 ZJO 7 ZJO C2 C2 C 0 1 Y N N -0.036 -25.115 14.961 -3.867 2.911 0.474 C2 ZJO 8 ZJO C3 C3 C 0 1 Y N N -0.356 -26.414 15.321 -3.405 1.606 0.361 C3 ZJO 9 ZJO C4 C4 C 0 1 Y N N -0.220 -29.986 19.844 1.069 4.093 -1.140 C4 ZJO 10 ZJO C5 C5 C 0 1 Y N N 3.188 -27.004 20.794 3.140 -1.207 0.091 C5 ZJO 11 ZJO C6 C6 C 0 1 Y N N -1.640 -29.360 21.615 2.927 3.887 -2.636 C6 ZJO 12 ZJO C7 C7 C 0 1 Y N N -1.401 -27.129 14.755 -4.300 0.547 0.435 C7 ZJO 13 ZJO C9 C8 C 0 1 Y N N 2.473 -24.168 17.112 -1.379 -3.095 -0.799 C9 ZJO 14 ZJO C10 C9 C 0 1 Y N N -2.176 -26.485 13.806 -5.646 0.793 0.620 C10 ZJO 15 ZJO C11 C10 C 0 1 Y N N -1.126 -27.755 19.966 2.463 2.136 -1.070 C11 ZJO 16 ZJO C12 C11 C 0 1 Y N N -0.912 -30.335 20.998 1.846 4.606 -2.160 C12 ZJO 17 ZJO C13 C12 C 0 1 N N N 2.798 -25.672 18.928 0.926 -1.802 -0.602 C13 ZJO 18 ZJO C14 C13 C 0 1 Y N N -1.876 -25.193 13.478 -6.103 2.094 0.731 C14 ZJO 19 ZJO C15 C14 C 0 1 Y N N 4.402 -26.469 21.213 4.317 -0.961 -0.604 C15 ZJO 20 ZJO C16 C15 C 0 1 N N N -0.179 -27.554 17.346 -0.859 2.324 0.060 C16 ZJO 21 ZJO C17 C16 C 0 1 Y N N -1.778 -28.091 21.134 3.237 2.655 -2.090 C17 ZJO 22 ZJO C18 C17 C 0 1 Y N N -0.851 -24.466 14.035 -5.214 3.151 0.664 C18 ZJO 23 ZJO C20 C18 C 0 1 Y N N 2.388 -27.762 21.605 3.171 -1.957 1.260 C20 ZJO 24 ZJO C21 C19 C 0 1 Y N N 1.376 -23.452 17.568 -0.780 -4.289 -1.181 C21 ZJO 25 ZJO C23 C20 C 0 1 Y N N 3.369 -23.654 16.196 -2.760 -3.024 -0.672 C23 ZJO 26 ZJO C25 C21 C 0 1 Y N N 4.716 -26.645 22.556 5.513 -1.467 -0.134 C25 ZJO 27 ZJO C26 C22 C 0 1 Y N N 2.762 -27.917 22.942 4.370 -2.459 1.725 C26 ZJO 28 ZJO C27 C23 C 0 1 Y N N 3.146 -22.388 15.643 -3.533 -4.140 -0.926 C27 ZJO 29 ZJO C28 C24 C 0 1 Y N N 1.171 -22.200 17.027 -1.559 -5.399 -1.438 C28 ZJO 30 ZJO C29 C25 C 0 1 Y N N 3.916 -27.345 23.407 5.539 -2.217 1.027 C29 ZJO 31 ZJO C30 C26 C 0 1 Y N N 2.038 -21.705 16.087 -2.934 -5.327 -1.306 C30 ZJO 32 ZJO O5 O1 O 0 1 N N N 2.909 -30.151 19.879 1.639 0.273 2.648 O5 ZJO 33 ZJO H1 H1 H 0 1 N N N 0.823 -24.618 15.387 -3.174 3.737 0.418 H1 ZJO 34 ZJO H2 H2 H 0 1 N N N 0.398 -30.712 19.336 0.225 4.655 -0.769 H2 ZJO 35 ZJO H3 H3 H 0 1 N N N -2.137 -29.608 22.541 3.533 4.290 -3.434 H3 ZJO 36 ZJO H4 H4 H 0 1 N N N -1.602 -28.150 15.044 -3.944 -0.469 0.347 H4 ZJO 37 ZJO H5 H5 H 0 1 N N N -3.003 -26.994 13.333 -6.343 -0.030 0.677 H5 ZJO 38 ZJO H6 H6 H 0 1 N N N -1.236 -26.770 19.538 2.706 1.174 -0.643 H6 ZJO 39 ZJO H7 H7 H 0 1 N N N -0.875 -31.340 21.391 1.610 5.570 -2.586 H7 ZJO 40 ZJO H8 H8 H 0 1 N N N 3.752 -25.222 19.241 1.186 -2.193 -1.586 H8 ZJO 41 ZJO H9 H9 H 0 1 N N N 1.964 -25.117 19.382 1.301 -2.616 0.019 H9 ZJO 42 ZJO H10 H10 H 0 1 N N N -2.486 -24.710 12.729 -7.156 2.284 0.876 H10 ZJO 43 ZJO H11 H11 H 0 1 N N N 5.062 -25.948 20.535 4.297 -0.375 -1.511 H11 ZJO 44 ZJO H12 H12 H 0 1 N N N -0.536 -26.701 17.942 -1.241 3.252 0.485 H12 ZJO 45 ZJO H13 H13 H 0 1 N N N -1.040 -28.101 16.936 -0.851 2.598 -0.995 H13 ZJO 46 ZJO H14 H14 H 0 1 N N N -2.384 -27.366 21.656 4.084 2.097 -2.461 H14 ZJO 47 ZJO H15 H15 H 0 1 N N N -0.684 -23.433 13.766 -5.574 4.165 0.752 H15 ZJO 48 ZJO H16 H16 H 0 1 N N N 1.492 -28.228 21.222 2.258 -2.146 1.805 H16 ZJO 49 ZJO H17 H17 H 0 1 N N N 0.710 -23.858 18.315 0.294 -4.348 -1.277 H17 ZJO 50 ZJO H18 H18 H 0 1 N N N 4.238 -24.226 15.908 -3.229 -2.098 -0.375 H18 ZJO 51 ZJO H19 H19 H 0 1 N N N 5.628 -26.211 22.938 6.429 -1.275 -0.673 H19 ZJO 52 ZJO H20 H20 H 0 1 N N N 2.138 -28.490 23.612 4.395 -3.042 2.634 H20 ZJO 53 ZJO H21 H21 H 0 1 N N N 3.812 -21.968 14.904 -4.607 -4.087 -0.823 H21 ZJO 54 ZJO H22 H22 H 0 1 N N N 0.325 -21.608 17.345 -1.094 -6.328 -1.735 H22 ZJO 55 ZJO H23 H23 H 0 1 N N N 4.191 -27.449 24.446 6.476 -2.612 1.393 H23 ZJO 56 ZJO H24 H24 H 0 1 N N N 1.840 -20.727 15.673 -3.541 -6.198 -1.503 H24 ZJO 57 ZJO H25 H25 H 0 1 N N N 2.260 -30.090 20.570 2.480 0.685 2.887 H25 ZJO 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZJO C14 C10 DOUB Y N 1 ZJO C14 C18 SING Y N 2 ZJO C10 C7 SING Y N 3 ZJO C18 C2 DOUB Y N 4 ZJO C7 C3 DOUB Y N 5 ZJO C2 C3 SING Y N 6 ZJO C3 N3 SING N N 7 ZJO C27 C30 DOUB Y N 8 ZJO C27 C23 SING Y N 9 ZJO C30 C28 SING Y N 10 ZJO C23 C9 DOUB Y N 11 ZJO N3 RU1 SING N N 12 ZJO N3 C16 SING N N 13 ZJO RU1 N2 SING N N 14 ZJO RU1 RU2 SING N N 15 ZJO C28 C21 DOUB Y N 16 ZJO C9 C21 SING Y N 17 ZJO C9 N2 SING N N 18 ZJO C16 N4 SING N N 19 ZJO N2 C13 SING N N 20 ZJO N4 RU2 SING N N 21 ZJO N4 C1 SING N N 22 ZJO RU2 N1 SING N N 23 ZJO RU2 O5 SING N N 24 ZJO C13 N1 SING N N 25 ZJO C1 C4 DOUB Y N 26 ZJO C1 C11 SING Y N 27 ZJO N1 C5 SING N N 28 ZJO C4 C12 SING Y N 29 ZJO C11 C17 DOUB Y N 30 ZJO C5 C15 DOUB Y N 31 ZJO C5 C20 SING Y N 32 ZJO C12 C6 DOUB Y N 33 ZJO C17 C6 SING Y N 34 ZJO C15 C25 SING Y N 35 ZJO C20 C26 DOUB Y N 36 ZJO C25 C29 DOUB Y N 37 ZJO C26 C29 SING Y N 38 ZJO C2 H1 SING N N 39 ZJO C4 H2 SING N N 40 ZJO C6 H3 SING N N 41 ZJO C7 H4 SING N N 42 ZJO C10 H5 SING N N 43 ZJO C11 H6 SING N N 44 ZJO C12 H7 SING N N 45 ZJO C13 H8 SING N N 46 ZJO C13 H9 SING N N 47 ZJO C14 H10 SING N N 48 ZJO C15 H11 SING N N 49 ZJO C16 H12 SING N N 50 ZJO C16 H13 SING N N 51 ZJO C17 H14 SING N N 52 ZJO C18 H15 SING N N 53 ZJO C20 H16 SING N N 54 ZJO C21 H17 SING N N 55 ZJO C23 H18 SING N N 56 ZJO C25 H19 SING N N 57 ZJO C26 H20 SING N N 58 ZJO C27 H21 SING N N 59 ZJO C28 H22 SING N N 60 ZJO C29 H23 SING N N 61 ZJO C30 H24 SING N N 62 ZJO O5 H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZJO InChI InChI 1.06 "InChI=1S/2C13H12N2.H2O.2Ru/c2*1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;;;/h2*1-10H,11H2;1H2;;/q2*-2;;+2;+3/p-1" ZJO InChIKey InChI 1.06 PDMORHSIDGQFCT-UHFFFAOYSA-M ZJO SMILES_CANONICAL CACTVS 3.385 "O[Ru]1N(CN([Ru]N(CN1c2ccccc2)c3ccccc3)c4ccccc4)c5ccccc5" ZJO SMILES CACTVS 3.385 "O[Ru]1N(CN([Ru]N(CN1c2ccccc2)c3ccccc3)c4ccccc4)c5ccccc5" ZJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3([Ru]2N(CN3c4ccccc4)c5ccccc5)O)c6ccccc6" ZJO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3([Ru]2N(CN3c4ccccc4)c5ccccc5)O)c6ccccc6" # _pdbx_chem_comp_identifier.comp_id ZJO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZJO "Create component" 2023-06-27 PDBE ZJO "Initial release" 2023-09-13 RCSB #