data_ZJS # _chem_comp.id ZJS _chem_comp.name "N-(3-methylbut-2-en-1-yl)adenosine 5'-(dihydrogen phosphate)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-30 _chem_comp.pdbx_modified_date 2021-09-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZJS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MJV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZJS P P1 P 0 1 N N N 20.451 4.051 111.419 6.045 1.745 0.143 P ZJS 1 ZJS OP1 O1 O 0 1 N N N 21.925 4.554 111.269 7.394 0.968 -0.264 OP1 ZJS 2 ZJS OP2 O2 O 0 1 N N N 19.592 3.659 110.186 5.655 2.663 -0.951 OP2 ZJS 3 ZJS "O5'" O3 O 0 1 N N N 20.440 2.871 112.482 4.866 0.678 0.394 "O5'" ZJS 4 ZJS "C5'" C1 C 0 1 N N N 19.631 1.724 112.270 4.335 -0.153 -0.640 "C5'" ZJS 5 ZJS "C4'" C2 C 0 1 N N R 18.685 1.452 113.416 3.234 -1.045 -0.063 "C4'" ZJS 6 ZJS "O4'" O4 O 0 1 N N N 19.426 1.075 114.605 2.075 -0.255 0.279 "O4'" ZJS 7 ZJS "C3'" C3 C 0 1 N N S 17.773 2.607 113.819 2.732 -2.039 -1.133 "C3'" ZJS 8 ZJS "O3'" O5 O 0 1 N N N 16.448 2.116 113.962 3.353 -3.315 -0.962 "O3'" ZJS 9 ZJS "C2'" C4 C 0 1 N N R 18.306 3.032 115.183 1.212 -2.138 -0.870 "C2'" ZJS 10 ZJS "O2'" O6 O 0 1 N N N 17.333 3.571 116.060 0.849 -3.477 -0.529 "O2'" ZJS 11 ZJS "C1'" C5 C 0 1 N N R 18.883 1.730 115.721 0.976 -1.191 0.327 "C1'" ZJS 12 ZJS N9 N1 N 0 1 Y N N 19.942 1.963 116.704 -0.300 -0.488 0.178 N9 ZJS 13 ZJS C8 C6 C 0 1 Y N N 21.109 2.531 116.423 -0.489 0.723 -0.419 C8 ZJS 14 ZJS N7 N2 N 0 1 Y N N 21.826 2.610 117.584 -1.749 1.048 -0.376 N7 ZJS 15 ZJS C5 C7 C 0 1 Y N N 21.064 2.089 118.584 -2.446 0.069 0.250 C5 ZJS 16 ZJS C6 C8 C 0 1 Y N N 21.337 1.940 119.925 -3.798 -0.125 0.580 C6 ZJS 17 ZJS N6 N3 N 0 1 N N N 22.609 2.403 120.354 -4.751 0.822 0.248 N6 ZJS 18 ZJS N1 N4 N 0 1 Y N N 20.409 1.391 120.746 -4.141 -1.240 1.216 N1 ZJS 19 ZJS C2 C9 C 0 1 Y N N 19.235 1.002 120.231 -3.239 -2.150 1.536 C2 ZJS 20 ZJS N3 N5 N 0 1 Y N N 18.967 1.144 118.884 -1.962 -2.010 1.249 N3 ZJS 21 ZJS C4 C10 C 0 1 Y N N 19.900 1.697 118.066 -1.526 -0.930 0.608 C4 ZJS 22 ZJS C12 C11 C 0 1 N N N 23.252 2.015 121.668 -6.156 0.602 0.599 C12 ZJS 23 ZJS C13 C12 C 0 1 N N N 23.293 0.442 121.774 -6.981 1.773 0.130 C13 ZJS 24 ZJS C14 C13 C 0 1 N N N 24.552 -0.027 121.762 -8.036 1.572 -0.620 C14 ZJS 25 ZJS C15 C14 C 0 1 N N N 24.792 -1.623 121.648 -8.761 2.745 -1.230 C15 ZJS 26 ZJS C16 C15 C 0 1 N N N 25.729 0.883 121.857 -8.525 0.170 -0.873 C16 ZJS 27 ZJS O1 O7 O 0 1 N Y N 19.603 5.210 112.141 6.298 2.592 1.489 O1 ZJS 28 ZJS H1 H1 H 0 1 N N N 22.163 4.568 110.349 7.709 0.348 0.408 H1 ZJS 29 ZJS H2 H2 H 0 1 N N N 19.040 1.876 111.355 3.920 0.472 -1.431 H2 ZJS 30 ZJS H3 H3 H 0 1 N N N 20.287 0.851 112.142 5.130 -0.776 -1.049 H3 ZJS 31 ZJS H4 H4 H 0 1 N N N 18.042 0.609 113.125 3.601 -1.582 0.812 H4 ZJS 32 ZJS H5 H5 H 0 1 N N N 17.841 3.433 113.095 2.924 -1.653 -2.134 H5 ZJS 33 ZJS H6 H6 H 0 1 N N N 15.871 2.828 114.213 3.074 -3.978 -1.608 H6 ZJS 34 ZJS H7 H7 H 0 1 N N N 19.126 3.750 115.035 0.651 -1.799 -1.741 H7 ZJS 35 ZJS H8 H8 H 0 1 N N N 17.745 3.809 116.882 1.033 -4.124 -1.224 H8 ZJS 36 ZJS H9 H9 H 0 1 N N N 18.075 1.135 116.171 0.995 -1.750 1.263 H9 ZJS 37 ZJS H10 H10 H 0 1 N N N 21.434 2.870 115.450 0.291 1.323 -0.863 H10 ZJS 38 ZJS H11 H11 H 0 1 N N N 23.254 2.122 119.643 -4.488 1.632 -0.217 H11 ZJS 39 ZJS H12 H12 H 0 1 N N N 18.487 0.571 120.879 -3.561 -3.041 2.054 H12 ZJS 40 ZJS H13 H13 H 0 1 N N N 24.276 2.414 121.710 -6.512 -0.309 0.118 H13 ZJS 41 ZJS H14 H14 H 0 1 N N N 22.664 2.426 122.502 -6.249 0.503 1.681 H14 ZJS 42 ZJS H15 H15 H 0 1 N N N 22.415 -0.183 121.847 -6.701 2.778 0.411 H15 ZJS 43 ZJS H18 H18 H 0 1 N N N 25.872 -1.833 121.652 -8.334 2.967 -2.208 H18 ZJS 44 ZJS H19 H19 H 0 1 N N N 24.317 -2.127 122.503 -9.817 2.500 -1.342 H19 ZJS 45 ZJS H20 H20 H 0 1 N N N 24.350 -1.994 120.712 -8.656 3.614 -0.581 H20 ZJS 46 ZJS H21 H21 H 0 1 N N N 25.383 1.925 121.927 -7.940 -0.532 -0.278 H21 ZJS 47 ZJS H22 H22 H 0 1 N N N 26.316 0.631 122.752 -9.576 0.095 -0.593 H22 ZJS 48 ZJS H23 H23 H 0 1 N N N 26.357 0.765 120.962 -8.413 -0.069 -1.931 H23 ZJS 49 ZJS H24 H24 H 0 1 N Y N 18.804 5.370 111.652 6.997 3.255 1.411 H24 ZJS 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZJS OP2 P DOUB N N 1 ZJS OP1 P SING N N 2 ZJS P "O5'" SING N N 3 ZJS "C5'" "O5'" SING N N 4 ZJS "C5'" "C4'" SING N N 5 ZJS "C4'" "C3'" SING N N 6 ZJS "C4'" "O4'" SING N N 7 ZJS "C3'" "O3'" SING N N 8 ZJS "C3'" "C2'" SING N N 9 ZJS "O4'" "C1'" SING N N 10 ZJS "C2'" "C1'" SING N N 11 ZJS "C2'" "O2'" SING N N 12 ZJS "C1'" N9 SING N N 13 ZJS C8 N9 SING Y N 14 ZJS C8 N7 DOUB Y N 15 ZJS N9 C4 SING Y N 16 ZJS N7 C5 SING Y N 17 ZJS C4 C5 DOUB Y N 18 ZJS C4 N3 SING Y N 19 ZJS C5 C6 SING Y N 20 ZJS N3 C2 DOUB Y N 21 ZJS C6 N6 SING N N 22 ZJS C6 N1 DOUB Y N 23 ZJS C2 N1 SING Y N 24 ZJS N6 C12 SING N N 25 ZJS C15 C14 SING N N 26 ZJS C12 C13 SING N N 27 ZJS C14 C13 DOUB N N 28 ZJS C14 C16 SING N N 29 ZJS P O1 SING N N 30 ZJS OP1 H1 SING N N 31 ZJS "C5'" H2 SING N N 32 ZJS "C5'" H3 SING N N 33 ZJS "C4'" H4 SING N N 34 ZJS "C3'" H5 SING N N 35 ZJS "O3'" H6 SING N N 36 ZJS "C2'" H7 SING N N 37 ZJS "O2'" H8 SING N N 38 ZJS "C1'" H9 SING N N 39 ZJS C8 H10 SING N N 40 ZJS N6 H11 SING N N 41 ZJS C2 H12 SING N N 42 ZJS C12 H13 SING N N 43 ZJS C12 H14 SING N N 44 ZJS C13 H15 SING N N 45 ZJS C15 H18 SING N N 46 ZJS C15 H19 SING N N 47 ZJS C15 H20 SING N N 48 ZJS C16 H21 SING N N 49 ZJS C16 H22 SING N N 50 ZJS C16 H23 SING N N 51 ZJS O1 H24 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZJS SMILES ACDLabs 12.01 "C/C(C)=C\CNc1ncnc2c1ncn2C1OC(COP(=O)(O)O)C(O)C1O" ZJS InChI InChI 1.03 "InChI=1S/C15H22N5O7P/c1-8(2)3-4-16-13-10-14(18-6-17-13)20(7-19-10)15-12(22)11(21)9(27-15)5-26-28(23,24)25/h3,6-7,9,11-12,15,21-22H,4-5H2,1-2H3,(H,16,17,18)(H2,23,24,25)/t9-,11-,12-,15-/m1/s1" ZJS InChIKey InChI 1.03 DUISZFLWBAPRBR-SDBHATRESA-N ZJS SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" ZJS SMILES CACTVS 3.385 "CC(C)=CCNc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" ZJS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C" ZJS SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCNc1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZJS "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-methylbut-2-en-1-yl)adenosine 5'-(dihydrogen phosphate)" ZJS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-(3-methylbut-2-enylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZJS "Create component" 2021-04-30 RCSB ZJS "Initial release" 2021-09-15 RCSB ##