data_ZL4 # _chem_comp.id ZL4 _chem_comp.name "(1R,3S,6S,18R,27R)-6-(6,6-dihydroxyoctyl)-5,8,18,27,34-pentaazahexacyclo[25.2.2.1~7,10~.1~11,15~.1~14,18~.0~1,3~]tetratriaconta-7,9,11(33),12,14,16-hexaene-4,32-dione (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H54 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-05-04 _chem_comp.pdbx_modified_date 2021-07-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 632.856 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZL4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MOZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZL4 C25 C1 C 0 1 Y N N 74.767 36.175 4.474 -1.400 -3.686 0.518 C25 ZL4 1 ZL4 O2 O1 O 0 1 N N N 75.285 39.639 5.420 -4.893 -4.407 -0.347 O2 ZL4 2 ZL4 O3 O2 O 0 1 N N N 76.426 32.492 -2.307 -1.075 1.365 -1.575 O3 ZL4 3 ZL4 C24 C2 C 0 1 Y N N 74.969 35.593 5.767 -1.622 -3.362 1.870 C24 ZL4 4 ZL4 C26 C3 C 0 1 Y N N 74.473 35.398 3.349 -0.181 -3.479 -0.133 C26 ZL4 5 ZL4 C23 C4 C 0 1 Y N N 75.262 36.375 6.801 -2.893 -3.227 2.336 C23 ZL4 6 ZL4 C22 C5 C 0 1 N N N 75.792 38.569 7.828 -5.286 -3.127 2.059 C22 ZL4 7 ZL4 C21 C6 C 0 1 N N N 76.947 37.990 8.642 -5.218 -1.789 2.803 C21 ZL4 8 ZL4 C20 C7 C 0 1 N N N 78.216 37.614 7.873 -5.908 -0.683 2.006 C20 ZL4 9 ZL4 C19 C8 C 0 1 N N N 78.619 38.504 6.705 -5.731 0.657 2.726 C19 ZL4 10 ZL4 C28 C9 C 0 1 Y N N 74.325 37.378 1.998 -1.044 -4.615 -2.090 C28 ZL4 11 ZL4 C27 C10 C 0 1 Y N N 74.257 35.996 2.110 -0.084 -3.776 -1.507 C27 ZL4 12 ZL4 C18 C11 C 0 1 N N N 79.344 37.748 5.582 -5.736 1.795 1.708 C18 ZL4 13 ZL4 C17 C12 C 0 1 N N N 78.606 36.520 5.067 -4.798 2.916 2.162 C17 ZL4 14 ZL4 C16 C13 C 0 1 N N N 79.037 36.047 3.689 -4.220 3.614 0.928 C16 ZL4 15 ZL4 N2 N1 N 1 1 Y N N 75.390 37.739 6.680 -3.960 -3.483 1.570 N2 ZL4 16 ZL4 C15 C14 C 0 1 N N N 78.369 34.748 3.294 -3.469 4.877 1.356 C15 ZL4 17 ZL4 C11 C15 C 0 1 N N N 79.065 31.579 -1.571 0.123 4.403 -2.316 C11 ZL4 18 ZL4 C12 C16 C 0 1 N N N 78.895 32.411 -0.355 -0.713 4.123 -1.074 C12 ZL4 19 ZL4 C13 C17 C 0 1 N N N 79.698 32.082 0.908 -0.447 4.966 0.175 C13 ZL4 20 ZL4 C14 C18 C 0 1 N N N 79.084 32.677 2.163 -1.521 6.031 0.357 C14 ZL4 21 ZL4 O1 O3 O 0 1 N N N 66.151 30.945 -0.739 7.577 -1.533 1.814 O1 ZL4 22 ZL4 N1 N2 N 0 1 N N N 78.911 34.161 2.020 -2.848 5.492 0.208 N1 ZL4 23 ZL4 C10 C19 C 0 1 N N S 77.826 31.397 -0.694 0.382 3.133 -1.502 C10 ZL4 24 ZL4 C7 C20 C 0 1 N N N 73.021 31.110 -0.252 2.415 0.946 -1.425 C7 ZL4 25 ZL4 C8 C21 C 0 1 N N S 74.087 32.002 -0.897 1.870 0.510 -2.787 C8 ZL4 26 ZL4 C9 C22 C 0 1 N N N 76.499 31.863 -1.255 -0.059 1.823 -2.053 C9 ZL4 27 ZL4 C6 C23 C 0 1 N N N 71.599 31.469 -0.669 3.818 0.370 -1.229 C6 ZL4 28 ZL4 C4 C24 C 0 1 N N N 69.111 30.802 -0.548 5.718 0.128 0.377 C4 ZL4 29 ZL4 C3 C25 C 0 1 N N N 68.094 29.943 0.208 6.213 0.462 1.785 C3 ZL4 30 ZL4 C2 C26 C 0 1 N N N 66.767 29.694 -0.522 7.617 -0.114 1.982 C2 ZL4 31 ZL4 C1 C27 C 0 1 N N N 65.896 28.732 0.282 8.112 0.219 3.390 C1 ZL4 32 ZL4 C5 C28 C 0 1 N N N 70.547 30.575 -0.041 4.314 0.704 0.180 C5 ZL4 33 ZL4 N N3 N 0 1 N N N 75.422 31.559 -0.521 0.520 1.085 -3.005 N ZL4 34 ZL4 C33 C29 C 0 1 N N N 78.646 33.919 -0.447 -2.165 3.686 -1.286 C33 ZL4 35 ZL4 C32 C30 C 0 1 N N N 78.063 34.513 0.832 -3.103 4.878 -1.071 C32 ZL4 36 ZL4 C31 C31 C 0 1 Y N N 75.193 38.424 5.484 -3.801 -4.016 0.354 C31 ZL4 37 ZL4 C30 C32 C 0 1 Y N N 74.862 37.570 4.334 -2.517 -4.180 -0.218 C30 ZL4 38 ZL4 C29 C33 C 0 1 Y N N 74.632 38.158 3.093 -2.256 -4.779 -1.461 C29 ZL4 39 ZL4 C35 C34 C 0 1 Y N N 73.981 35.165 0.928 0.829 -2.924 -2.270 C35 ZL4 40 ZL4 N3 N4 N 0 1 Y N N 74.297 33.837 0.834 1.275 -1.705 -1.745 N3 ZL4 41 ZL4 C36 C35 C 0 1 Y N N 73.443 35.485 -0.295 1.412 -3.030 -3.487 C36 ZL4 42 ZL4 N4 N5 N 0 1 Y N N 73.428 34.392 -1.129 1.917 -1.821 -3.806 N4 ZL4 43 ZL4 C34 C36 C 0 1 Y N N 73.949 33.415 -0.411 1.697 -0.988 -2.820 C34 ZL4 44 ZL4 O O4 O 0 1 N N N 66.985 29.032 -1.753 8.505 0.455 1.017 O ZL4 45 ZL4 C C37 C 0 1 N N N 65.541 29.233 1.671 9.516 -0.357 3.587 C ZL4 46 ZL4 H1 H1 H 0 1 N N N 74.884 34.525 5.901 -0.784 -3.221 2.537 H1 ZL4 47 ZL4 H2 H2 H 0 1 N N N 74.413 34.324 3.442 0.673 -3.098 0.407 H2 ZL4 48 ZL4 H3 H3 H 0 1 N N N 75.405 35.923 7.771 -3.046 -2.904 3.355 H3 ZL4 49 ZL4 H4 H4 H 0 1 N N N 76.096 39.556 7.451 -5.643 -3.902 2.737 H4 ZL4 50 ZL4 H5 H5 H 0 1 N N N 74.923 38.682 8.493 -5.971 -3.039 1.216 H5 ZL4 51 ZL4 H6 H6 H 0 1 N N N 77.227 38.737 9.400 -5.709 -1.893 3.771 H6 ZL4 52 ZL4 H7 H7 H 0 1 N N N 76.579 37.081 9.141 -4.174 -1.519 2.959 H7 ZL4 53 ZL4 H8 H8 H 0 1 N N N 78.073 36.597 7.479 -5.466 -0.623 1.012 H8 ZL4 54 ZL4 H9 H9 H 0 1 N N N 79.049 37.615 8.591 -6.971 -0.909 1.918 H9 ZL4 55 ZL4 H10 H10 H 0 1 N N N 79.287 39.292 7.082 -6.548 0.800 3.434 H10 ZL4 56 ZL4 H11 H11 H 0 1 N N N 77.711 38.962 6.287 -4.782 0.657 3.263 H11 ZL4 57 ZL4 H12 H12 H 0 1 N N N 74.136 37.847 1.044 -0.835 -5.126 -3.018 H12 ZL4 58 ZL4 H13 H13 H 0 1 N N N 80.324 37.425 5.963 -5.405 1.416 0.742 H13 ZL4 59 ZL4 H14 H14 H 0 1 N N N 79.488 38.440 4.739 -6.747 2.190 1.614 H14 ZL4 60 ZL4 H15 H15 H 0 1 N N N 77.533 36.758 5.027 -5.354 3.637 2.761 H15 ZL4 61 ZL4 H16 H16 H 0 1 N N N 78.773 35.698 5.778 -3.987 2.495 2.757 H16 ZL4 62 ZL4 H17 H17 H 0 1 N N N 80.127 35.898 3.691 -3.533 2.939 0.417 H17 ZL4 63 ZL4 H18 H18 H 0 1 N N N 78.773 36.819 2.951 -5.031 3.886 0.252 H18 ZL4 64 ZL4 H19 H19 H 0 1 N N N 77.293 34.935 3.162 -4.169 5.579 1.809 H19 ZL4 65 ZL4 H20 H20 H 0 1 N N N 78.517 34.019 4.104 -2.701 4.612 2.083 H20 ZL4 66 ZL4 H21 H21 H 0 1 N N N 79.839 30.797 -1.598 -0.362 4.289 -3.285 H21 ZL4 67 ZL4 H22 H22 H 0 1 N N N 78.971 32.036 -2.567 0.865 5.199 -2.254 H22 ZL4 68 ZL4 H23 H23 H 0 1 N N N 79.743 30.989 1.022 -0.435 4.316 1.050 H23 ZL4 69 ZL4 H24 H24 H 0 1 N N N 80.717 32.480 0.791 0.525 5.451 0.079 H24 ZL4 70 ZL4 H25 H25 H 0 1 N N N 78.101 32.215 2.338 -1.424 6.464 1.353 H25 ZL4 71 ZL4 H26 H26 H 0 1 N N N 79.743 32.472 3.019 -1.371 6.815 -0.385 H26 ZL4 72 ZL4 H27 H27 H 0 1 N N N 66.011 31.378 0.095 6.993 -1.987 2.437 H27 ZL4 73 ZL4 H29 H29 H 0 1 N N N 77.802 30.488 -0.075 1.284 3.111 -0.884 H29 ZL4 74 ZL4 H30 H30 H 0 1 N N N 73.217 30.067 -0.542 2.459 2.035 -1.384 H30 ZL4 75 ZL4 H31 H31 H 0 1 N N N 73.099 31.208 0.841 1.758 0.579 -0.637 H31 ZL4 76 ZL4 H32 H32 H 0 1 N N N 73.970 31.974 -1.990 2.546 0.827 -3.581 H32 ZL4 77 ZL4 H33 H33 H 0 1 N N N 71.399 32.508 -0.369 3.788 -0.712 -1.357 H33 ZL4 78 ZL4 H34 H34 H 0 1 N N N 71.523 31.382 -1.763 4.496 0.804 -1.964 H34 ZL4 79 ZL4 H35 H35 H 0 1 N N N 68.850 31.862 -0.414 6.395 0.562 -0.359 H35 ZL4 80 ZL4 H36 H36 H 0 1 N N N 69.067 30.546 -1.617 5.688 -0.954 0.249 H36 ZL4 81 ZL4 H37 H37 H 0 1 N N N 68.558 28.966 0.409 6.243 1.544 1.913 H37 ZL4 82 ZL4 H38 H38 H 0 1 N N N 67.868 30.445 1.160 5.536 0.028 2.521 H38 ZL4 83 ZL4 H39 H39 H 0 1 N N N 64.962 28.564 -0.274 8.142 1.301 3.518 H39 ZL4 84 ZL4 H40 H40 H 0 1 N N N 66.437 27.780 0.386 7.435 -0.215 4.126 H40 ZL4 85 ZL4 H41 H41 H 0 1 N N N 70.820 29.530 -0.248 4.344 1.786 0.308 H41 ZL4 86 ZL4 H42 H42 H 0 1 N N N 70.556 30.748 1.045 3.637 0.270 0.915 H42 ZL4 87 ZL4 H43 H43 H 0 1 N N N 75.537 31.013 0.309 0.056 0.925 -3.842 H43 ZL4 88 ZL4 H44 H44 H 0 1 N N N 79.603 34.419 -0.660 -2.285 3.309 -2.302 H44 ZL4 89 ZL4 H45 H45 H 0 1 N N N 77.943 34.107 -1.272 -2.413 2.897 -0.576 H45 ZL4 90 ZL4 H46 H46 H 0 1 N N N 78.018 35.608 0.733 -4.136 4.533 -1.106 H46 ZL4 91 ZL4 H47 H47 H 0 1 N N N 77.048 34.117 0.983 -2.943 5.610 -1.862 H47 ZL4 92 ZL4 H48 H48 H 0 1 N N N 74.694 39.231 2.987 -3.020 -5.378 -1.932 H48 ZL4 93 ZL4 H49 H49 H 0 1 N N N 74.710 33.277 1.552 1.281 -1.431 -0.815 H49 ZL4 94 ZL4 H50 H50 H 0 1 N N N 73.080 36.465 -0.566 1.465 -3.923 -4.093 H50 ZL4 95 ZL4 H52 H52 H 0 1 N N N 67.400 28.192 -1.593 8.581 1.417 1.072 H52 ZL4 96 ZL4 H53 H53 H 0 1 N N N 64.915 28.486 2.182 9.486 -1.439 3.459 H53 ZL4 97 ZL4 H54 H54 H 0 1 N N N 66.463 29.396 2.249 10.193 0.077 2.851 H54 ZL4 98 ZL4 H55 H55 H 0 1 N N N 64.988 30.180 1.589 9.869 -0.119 4.590 H55 ZL4 99 ZL4 H28 H28 H 0 1 N N N 75.506 39.986 6.276 -5.268 -3.715 -0.910 H28 ZL4 100 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZL4 O3 C9 DOUB N N 1 ZL4 O C2 SING N N 2 ZL4 C11 C10 SING N N 3 ZL4 C11 C12 SING N N 4 ZL4 C9 C10 SING N N 5 ZL4 C9 N SING N N 6 ZL4 N4 C34 DOUB Y N 7 ZL4 N4 C36 SING Y N 8 ZL4 C8 N SING N N 9 ZL4 C8 C34 SING N N 10 ZL4 C8 C7 SING N N 11 ZL4 O1 C2 SING N N 12 ZL4 C10 C12 SING N N 13 ZL4 C6 C7 SING N N 14 ZL4 C6 C5 SING N N 15 ZL4 C4 C5 SING N N 16 ZL4 C4 C3 SING N N 17 ZL4 C2 C3 SING N N 18 ZL4 C2 C1 SING N N 19 ZL4 C33 C12 SING N N 20 ZL4 C33 C32 SING N N 21 ZL4 C34 N3 SING Y N 22 ZL4 C12 C13 SING N N 23 ZL4 C36 C35 DOUB Y N 24 ZL4 C1 C SING N N 25 ZL4 C32 N1 SING N N 26 ZL4 N3 C35 SING Y N 27 ZL4 C13 C14 SING N N 28 ZL4 C35 C27 SING N N 29 ZL4 C28 C27 DOUB Y N 30 ZL4 C28 C29 SING Y N 31 ZL4 N1 C14 SING N N 32 ZL4 N1 C15 SING N N 33 ZL4 C27 C26 SING Y N 34 ZL4 C29 C30 DOUB Y N 35 ZL4 C15 C16 SING N N 36 ZL4 C26 C25 DOUB Y N 37 ZL4 C16 C17 SING N N 38 ZL4 C30 C25 SING Y N 39 ZL4 C30 C31 SING Y N 40 ZL4 C25 C24 SING Y N 41 ZL4 C17 C18 SING N N 42 ZL4 O2 C31 SING N N 43 ZL4 C31 N2 DOUB Y N 44 ZL4 C18 C19 SING N N 45 ZL4 C24 C23 DOUB Y N 46 ZL4 N2 C23 SING Y N 47 ZL4 N2 C22 SING N N 48 ZL4 C19 C20 SING N N 49 ZL4 C22 C21 SING N N 50 ZL4 C20 C21 SING N N 51 ZL4 C24 H1 SING N N 52 ZL4 C26 H2 SING N N 53 ZL4 C23 H3 SING N N 54 ZL4 C22 H4 SING N N 55 ZL4 C22 H5 SING N N 56 ZL4 C21 H6 SING N N 57 ZL4 C21 H7 SING N N 58 ZL4 C20 H8 SING N N 59 ZL4 C20 H9 SING N N 60 ZL4 C19 H10 SING N N 61 ZL4 C19 H11 SING N N 62 ZL4 C28 H12 SING N N 63 ZL4 C18 H13 SING N N 64 ZL4 C18 H14 SING N N 65 ZL4 C17 H15 SING N N 66 ZL4 C17 H16 SING N N 67 ZL4 C16 H17 SING N N 68 ZL4 C16 H18 SING N N 69 ZL4 C15 H19 SING N N 70 ZL4 C15 H20 SING N N 71 ZL4 C11 H21 SING N N 72 ZL4 C11 H22 SING N N 73 ZL4 C13 H23 SING N N 74 ZL4 C13 H24 SING N N 75 ZL4 C14 H25 SING N N 76 ZL4 C14 H26 SING N N 77 ZL4 O1 H27 SING N N 78 ZL4 C10 H29 SING N N 79 ZL4 C7 H30 SING N N 80 ZL4 C7 H31 SING N N 81 ZL4 C8 H32 SING N N 82 ZL4 C6 H33 SING N N 83 ZL4 C6 H34 SING N N 84 ZL4 C4 H35 SING N N 85 ZL4 C4 H36 SING N N 86 ZL4 C3 H37 SING N N 87 ZL4 C3 H38 SING N N 88 ZL4 C1 H39 SING N N 89 ZL4 C1 H40 SING N N 90 ZL4 C5 H41 SING N N 91 ZL4 C5 H42 SING N N 92 ZL4 N H43 SING N N 93 ZL4 C33 H44 SING N N 94 ZL4 C33 H45 SING N N 95 ZL4 C32 H46 SING N N 96 ZL4 C32 H47 SING N N 97 ZL4 C29 H48 SING N N 98 ZL4 N3 H49 SING N N 99 ZL4 C36 H50 SING N N 100 ZL4 O H52 SING N N 101 ZL4 C H53 SING N N 102 ZL4 C H54 SING N N 103 ZL4 C H55 SING N N 104 ZL4 O2 H28 SING N N 105 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZL4 SMILES ACDLabs 12.01 "CCC(O)(O)CCCCCC1NC(=O)C2CC32CCN(CCCCCCCC[n+]2ccc4cc(ccc4c2O)c2cnc1[NH]2)CC3" ZL4 InChI InChI 1.03 "InChI=1S/C37H53N5O4/c1-2-37(45,46)16-9-7-8-12-31-33-38-26-32(39-33)28-13-14-29-27(24-28)15-21-42(35(29)44)20-11-6-4-3-5-10-19-41-22-17-36(18-23-41)25-30(36)34(43)40-31/h13-15,21,24,26,30-31,45-46H,2-12,16-20,22-23,25H2,1H3,(H2,38,39,40,43,44)/p+1/t30-,31+/m1/s1" ZL4 InChIKey InChI 1.03 RPBUYCMDTDPYHG-JSOSNVBQSA-O ZL4 SMILES_CANONICAL CACTVS 3.385 "CCC(O)(O)CCCCC[C@@H]1NC(=O)[C@H]2CC23CCN(CCCCCCCC[n+]4ccc5cc(ccc5c4O)c6[nH]c1nc6)CC3" ZL4 SMILES CACTVS 3.385 "CCC(O)(O)CCCCC[CH]1NC(=O)[CH]2CC23CCN(CCCCCCCC[n+]4ccc5cc(ccc5c4O)c6[nH]c1nc6)CC3" ZL4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(CCCCC[C@H]1c2[nH]c(cn2)-c3ccc4c(c3)cc[n+](c4O)CCCCCCCCN5CCC6(CC5)C[C@@H]6C(=O)N1)(O)O" ZL4 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CCCCCC1c2[nH]c(cn2)-c3ccc4c(c3)cc[n+](c4O)CCCCCCCCN5CCC6(CC5)CC6C(=O)N1)(O)O" # _pdbx_chem_comp_identifier.comp_id ZL4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1S,3S,6S,27R)-6-(6,6-dihydroxyoctyl)-32-hydroxy-4-oxo-5,8,18,27,34-pentaazahexacyclo[25.2.2.1~7,10~.1~11,15~.1~14,18~.0~1,3~]tetratriaconta-7,9,11(33),12,14,16,18(32)-heptaen-18-ium (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZL4 "Create component" 2021-05-04 RCSB ZL4 "Modify charge" 2021-05-05 RCSB ZL4 "Initial release" 2021-07-14 RCSB ##