data_ZLD
#
_chem_comp.id ZLD
_chem_comp.name "N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H20 F N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Linezolid
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-06-03
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 337.346
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZLD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CPW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZLD C2 C2 C 0 1 Y N N 65.866 119.365 100.366 0.163 -0.247 -0.342 C2 ZLD 1
ZLD C5 C5 C 0 1 Y N N 66.586 120.364 101.047 0.867 -1.307 0.213 C5 ZLD 2
ZLD C9 C9 C 0 1 N N N 62.674 120.824 97.070 -4.430 0.899 -0.184 C9 ZLD 3
ZLD C1 C1 C 0 1 Y N N 66.505 118.052 100.075 0.832 0.909 -0.721 C1 ZLD 4
ZLD C3 C3 C 0 1 Y N N 67.913 117.838 100.525 2.199 1.005 -0.547 C3 ZLD 5
ZLD N4 N4 N 0 1 N N N 64.491 119.643 99.894 -1.223 -0.346 -0.525 N4 ZLD 6
ZLD C6 C6 C 0 1 N N N 63.989 119.031 98.632 -2.087 0.698 -1.099 C6 ZLD 7
ZLD C7 C7 C 0 1 N N N 63.475 120.452 100.342 -1.977 -1.408 -0.211 C7 ZLD 8
ZLD C8 C8 C 0 1 N N S 62.750 119.854 98.273 -3.493 0.070 -1.065 C8 ZLD 9
ZLD O10 O10 O 0 1 N N N 62.422 120.580 99.457 -3.277 -1.250 -0.486 O10 ZLD 10
ZLD N11 N11 N 0 1 N N N 63.356 122.109 97.324 -5.759 0.283 -0.169 N11 ZLD 11
ZLD C12 C12 C 0 1 N N N 64.694 122.316 97.057 -6.754 0.844 0.547 C12 ZLD 12
ZLD C13 C13 C 0 1 N N N 65.172 123.712 97.399 -8.121 0.209 0.563 C13 ZLD 13
ZLD O14 O14 O 0 1 N N N 65.440 121.469 96.595 -6.549 1.859 1.177 O14 ZLD 14
ZLD O15 O15 O 0 1 N N N 63.479 121.023 101.449 -1.522 -2.423 0.278 O15 ZLD 15
ZLD C16 C16 C 0 1 Y N N 67.937 120.126 101.477 2.235 -1.212 0.389 C16 ZLD 16
ZLD C17 C17 C 0 1 Y N N 68.722 118.851 101.272 2.905 -0.054 0.008 C17 ZLD 17
ZLD F18 F18 F 0 1 N N N 68.492 121.215 102.075 2.921 -2.243 0.929 F18 ZLD 18
ZLD N19 N19 N 0 1 N N N 70.009 118.670 101.720 4.291 0.043 0.184 N19 ZLD 19
ZLD C20 C20 C 0 1 N N N 70.399 119.163 103.123 4.971 0.257 -1.102 C20 ZLD 20
ZLD C21 C21 C 0 1 N N N 71.930 118.832 103.484 6.485 0.297 -0.872 C21 ZLD 21
ZLD O22 O22 O 0 1 N N N 72.439 117.603 103.185 6.790 1.321 0.079 O22 ZLD 22
ZLD C23 C23 C 0 1 N N N 72.392 117.475 101.767 6.144 1.144 1.343 C23 ZLD 23
ZLD C24 C24 C 0 1 N N N 70.793 117.568 101.259 4.628 1.112 1.135 C24 ZLD 24
ZLD H5 H5 H 0 1 N N N 66.120 121.317 101.248 0.346 -2.206 0.508 H5 ZLD 25
ZLD H9 H9 H 0 1 N N N 63.154 120.342 96.206 -4.035 0.938 0.831 H9 ZLD 26
ZLD H9A H9A H 0 1 N N N 61.612 121.043 96.886 -4.504 1.911 -0.584 H9A ZLD 27
ZLD H1 H1 H 0 1 N N N 65.965 117.276 99.553 0.284 1.733 -1.153 H1 ZLD 28
ZLD H3 H3 H 0 1 N N N 68.377 116.890 100.296 2.719 1.904 -0.842 H3 ZLD 29
ZLD H6 H6 H 0 1 N N N 64.746 119.085 97.836 -2.055 1.600 -0.488 H6 ZLD 30
ZLD H6A H6A H 0 1 N N N 63.758 117.962 98.751 -1.791 0.919 -2.125 H6A ZLD 31
ZLD H8 H8 H 0 1 N N N 62.063 119.080 97.902 -3.897 -0.018 -2.074 H8 ZLD 32
ZLD HN11 HN11 H 0 0 N N N 62.824 122.864 97.707 -5.923 -0.530 -0.673 HN11 ZLD 33
ZLD H13 H13 H 0 1 N N N 65.288 123.804 98.489 -8.180 -0.505 1.384 H13 ZLD 34
ZLD H13A H13A H 0 0 N N N 66.140 123.898 96.911 -8.878 0.982 0.699 H13A ZLD 35
ZLD H13B H13B H 0 0 N N N 64.435 124.448 97.046 -8.293 -0.307 -0.381 H13B ZLD 36
ZLD H20 H20 H 0 1 N N N 70.259 120.253 103.162 4.728 -0.559 -1.783 H20 ZLD 37
ZLD H20A H20A H 0 0 N N N 69.760 118.644 103.853 4.644 1.202 -1.535 H20A ZLD 38
ZLD H21 H21 H 0 1 N N N 72.541 119.561 102.932 6.820 -0.667 -0.490 H21 ZLD 39
ZLD H21A H21A H 0 0 N N N 71.957 118.870 104.583 6.990 0.512 -1.813 H21A ZLD 40
ZLD H23 H23 H 0 1 N N N 72.974 118.286 101.304 6.470 0.204 1.790 H23 ZLD 41
ZLD H23A H23A H 0 0 N N N 72.820 116.507 101.468 6.404 1.971 2.003 H23A ZLD 42
ZLD H24 H24 H 0 1 N N N 70.294 116.654 101.613 4.294 2.071 0.738 H24 ZLD 43
ZLD H24A H24A H 0 0 N N N 70.851 117.701 100.169 4.134 0.920 2.088 H24A ZLD 44
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZLD C2 C5 DOUB Y N 1
ZLD C2 C1 SING Y N 2
ZLD C2 N4 SING N N 3
ZLD C5 C16 SING Y N 4
ZLD C9 C8 SING N N 5
ZLD C9 N11 SING N N 6
ZLD C1 C3 DOUB Y N 7
ZLD C3 C17 SING Y N 8
ZLD N4 C6 SING N N 9
ZLD N4 C7 SING N N 10
ZLD C6 C8 SING N N 11
ZLD C7 O10 SING N N 12
ZLD C7 O15 DOUB N N 13
ZLD C8 O10 SING N N 14
ZLD N11 C12 SING N N 15
ZLD C12 C13 SING N N 16
ZLD C12 O14 DOUB N N 17
ZLD C16 C17 DOUB Y N 18
ZLD C16 F18 SING N N 19
ZLD C17 N19 SING N N 20
ZLD N19 C20 SING N N 21
ZLD N19 C24 SING N N 22
ZLD C20 C21 SING N N 23
ZLD C21 O22 SING N N 24
ZLD O22 C23 SING N N 25
ZLD C23 C24 SING N N 26
ZLD C5 H5 SING N N 27
ZLD C9 H9 SING N N 28
ZLD C9 H9A SING N N 29
ZLD C1 H1 SING N N 30
ZLD C3 H3 SING N N 31
ZLD C6 H6 SING N N 32
ZLD C6 H6A SING N N 33
ZLD C8 H8 SING N N 34
ZLD N11 HN11 SING N N 35
ZLD C13 H13 SING N N 36
ZLD C13 H13A SING N N 37
ZLD C13 H13B SING N N 38
ZLD C20 H20 SING N N 39
ZLD C20 H20A SING N N 40
ZLD C21 H21 SING N N 41
ZLD C21 H21A SING N N 42
ZLD C23 H23 SING N N 43
ZLD C23 H23A SING N N 44
ZLD C24 H24 SING N N 45
ZLD C24 H24A SING N N 46
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZLD SMILES ACDLabs 10.04 "O=C1OC(CNC(=O)C)CN1c3cc(F)c(N2CCOCC2)cc3"
ZLD SMILES_CANONICAL CACTVS 3.341 "CC(=O)NC[C@H]1CN(C(=O)O1)c2ccc(N3CCOCC3)c(F)c2"
ZLD SMILES CACTVS 3.341 "CC(=O)NC[CH]1CN(C(=O)O1)c2ccc(N3CCOCC3)c(F)c2"
ZLD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)NC[C@H]1CN(C(=O)O1)c2ccc(c(c2)F)N3CCOCC3"
ZLD SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NCC1CN(C(=O)O1)c2ccc(c(c2)F)N3CCOCC3"
ZLD InChI InChI 1.03 "InChI=1S/C16H20FN3O4/c1-11(21)18-9-13-10-20(16(22)24-13)12-2-3-15(14(17)8-12)19-4-6-23-7-5-19/h2-3,8,13H,4-7,9-10H2,1H3,(H,18,21)/t13-/m0/s1"
ZLD InChIKey InChI 1.03 TYZROVQLWOKYKF-ZDUSSCGKSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZLD "SYSTEMATIC NAME" ACDLabs 10.04 "N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide"
ZLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[[(5S)-3-(3-fluoro-4-morpholin-4-yl-phenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZLD "Create component" 2008-06-03 RCSB
ZLD "Modify aromatic_flag" 2011-06-04 RCSB
ZLD "Modify descriptor" 2011-06-04 RCSB
ZLD "Modify synonyms" 2015-07-13 RCSB
ZLD "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZLD
_pdbx_chem_comp_synonyms.name Linezolid
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##