data_ZLY # _chem_comp.id ZLY _chem_comp.name "(4-{(10R,11E,14S,18S)-18-(2-amino-2-oxoethyl)-14-[(naphthalen-1-yl)methyl]-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl}phenyl)acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H44 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-06 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 652.779 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MPH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZLY C10 C1 C 0 1 Y N N 11.870 86.272 0.379 -2.034 -6.185 0.874 C10 ZLY 1 ZLY C13 C2 C 0 1 Y N N 11.988 86.642 3.156 -3.993 -4.303 1.436 C13 ZLY 2 ZLY C15 C3 C 0 1 Y N N 11.601 85.841 5.442 -4.736 -2.030 1.381 C15 ZLY 3 ZLY C17 C4 C 0 1 N N N 11.754 81.430 4.256 0.176 -2.729 -2.096 C17 ZLY 4 ZLY C20 C5 C 0 1 N N R 12.027 78.148 6.064 2.644 -0.129 -0.711 C20 ZLY 5 ZLY C21 C6 C 0 1 Y N N 13.407 78.027 6.836 4.123 -0.410 -0.624 C21 ZLY 6 ZLY C22 C7 C 0 1 Y N N 13.477 78.477 8.149 4.996 0.200 -1.506 C22 ZLY 7 ZLY C24 C8 C 0 1 Y N N 15.806 77.846 8.226 6.835 -0.924 -0.465 C24 ZLY 8 ZLY C26 C9 C 0 1 N N N 17.756 79.152 9.202 8.960 -0.212 0.553 C26 ZLY 9 ZLY C02 C10 C 0 1 N N N 7.649 80.053 4.456 -2.638 0.588 -1.786 C02 ZLY 10 ZLY C04 C11 C 0 1 N N N 9.764 80.764 2.942 -2.024 -1.619 -2.511 C04 ZLY 11 ZLY C05 C12 C 0 1 N N S 10.390 81.870 3.848 -1.273 -2.603 -1.616 C05 ZLY 12 ZLY C06 C13 C 0 1 N N N 10.448 83.123 2.926 -1.289 -2.126 -0.164 C06 ZLY 13 ZLY C07 C14 C 0 1 Y N N 11.031 84.455 3.528 -2.573 -2.561 0.493 C07 ZLY 14 ZLY C08 C15 C 0 1 Y N N 11.482 85.470 2.642 -2.778 -3.913 0.818 C08 ZLY 15 ZLY C09 C16 C 0 1 Y N N 11.419 85.279 1.232 -1.801 -4.885 0.544 C09 ZLY 16 ZLY C11 C17 C 0 1 Y N N 12.379 87.455 0.892 -3.228 -6.569 1.481 C11 ZLY 17 ZLY C12 C18 C 0 1 Y N N 12.442 87.652 2.272 -4.197 -5.654 1.762 C12 ZLY 18 ZLY C14 C19 C 0 1 Y N N 12.051 86.836 4.566 -4.969 -3.330 1.711 C14 ZLY 19 ZLY C16 C20 C 0 1 Y N N 11.092 84.656 4.919 -3.542 -1.647 0.774 C16 ZLY 20 ZLY C18 C21 C 0 1 N N N 11.897 79.981 4.450 0.914 -1.442 -1.829 C18 ZLY 21 ZLY C19 C22 C 0 1 N N N 11.886 79.545 5.645 1.908 -1.418 -0.977 C19 ZLY 22 ZLY C23 C23 C 0 1 Y N N 14.677 78.388 8.839 6.352 -0.057 -1.426 C23 ZLY 23 ZLY C25 C24 C 0 1 N N N 17.128 77.762 9.036 8.313 -1.205 -0.378 C25 ZLY 24 ZLY C29 C25 C 0 1 Y N N 15.738 77.389 6.908 5.964 -1.530 0.421 C29 ZLY 25 ZLY C30 C26 C 0 1 Y N N 14.533 77.481 6.208 4.608 -1.273 0.341 C30 ZLY 26 ZLY C31 C27 C 0 1 N N N 12.064 77.168 4.894 2.164 0.473 0.611 C31 ZLY 27 ZLY C32 C28 C 0 1 N N N 10.863 76.196 4.826 1.021 1.422 0.356 C32 ZLY 28 ZLY C34 C29 C 0 1 N N N 8.575 75.332 5.260 -0.568 3.079 1.091 C34 ZLY 29 ZLY C35 C30 C 0 1 N N N 9.098 74.590 6.493 -0.220 4.141 0.054 C35 ZLY 30 ZLY C36 C31 C 0 1 N N N 8.167 73.431 6.882 0.602 5.251 0.714 C36 ZLY 31 ZLY C37 C32 C 0 1 N N N 8.269 72.352 5.788 -0.279 6.033 1.688 C37 ZLY 32 ZLY C38 C33 C 0 1 N N N 8.672 72.955 4.424 -1.477 5.177 2.104 C38 ZLY 33 ZLY C39 C34 C 0 1 N N N 8.072 74.361 4.178 -1.012 3.749 2.392 C39 ZLY 34 ZLY C41 C35 C 0 1 N N S 6.885 78.891 5.242 -3.421 1.545 -0.923 C41 ZLY 35 ZLY C42 C36 C 0 1 N N N 6.431 79.470 6.548 -4.514 2.215 -1.757 C42 ZLY 36 ZLY C43 C37 C 0 1 N N N 7.587 79.915 7.498 -5.370 3.076 -0.865 C43 ZLY 37 ZLY C47 C38 C 0 1 N N N 7.666 76.521 4.796 -1.656 2.171 0.589 C47 ZLY 38 ZLY N03 N1 N 0 1 N N N 8.959 79.667 3.767 -2.895 -0.754 -1.678 N03 ZLY 39 ZLY N33 N2 N 0 1 N N N 9.568 76.386 5.488 0.638 2.260 1.371 N33 ZLY 40 ZLY N44 N3 N 0 1 N N N 7.282 80.931 8.499 -6.403 3.767 -1.386 N44 ZLY 41 ZLY N46 N4 N 0 1 N N N 7.749 77.799 5.560 -2.488 2.575 -0.410 N46 ZLY 42 ZLY O01 O1 O 0 1 N N N 7.199 81.155 4.418 -1.803 1.005 -2.561 O01 ZLY 43 ZLY O27 O2 O 0 1 N N N 18.624 79.355 10.092 10.281 -0.270 0.785 O27 ZLY 44 ZLY O28 O3 O 0 1 N N N 17.410 80.110 8.451 8.289 0.637 1.091 O28 ZLY 45 ZLY O40 O4 O 0 1 N N N 11.023 75.232 4.159 0.465 1.440 -0.721 O40 ZLY 46 ZLY O45 O5 O 0 1 N N N 8.681 79.428 7.390 -5.130 3.146 0.322 O45 ZLY 47 ZLY O48 O6 O 0 1 N N N 6.864 76.435 3.911 -1.796 1.068 1.085 O48 ZLY 48 ZLY H1 H1 H 0 1 N N N 11.825 86.124 -0.690 -1.284 -6.931 0.657 H1 ZLY 49 ZLY H2 H2 H 0 1 N N N 11.648 85.991 6.510 -5.488 -1.285 1.593 H2 ZLY 50 ZLY H3 H3 H 0 1 N N N 12.463 81.743 3.476 0.663 -3.546 -1.565 H3 ZLY 51 ZLY H4 H4 H 0 1 N N N 12.007 81.929 5.203 0.184 -2.937 -3.167 H4 ZLY 52 ZLY H5 H5 H 0 1 N N N 11.213 77.870 6.750 2.458 0.572 -1.523 H5 ZLY 53 ZLY H6 H6 H 0 1 N N N 12.603 78.893 8.629 4.618 0.878 -2.257 H6 ZLY 54 ZLY H7 H7 H 0 1 N N N 10.573 80.264 2.390 -1.310 -1.008 -3.065 H7 ZLY 55 ZLY H8 H8 H 0 1 N N N 9.075 81.242 2.230 -2.640 -2.174 -3.224 H8 ZLY 56 ZLY H9 H9 H 0 1 N N N 9.749 82.062 4.721 -1.754 -3.583 -1.677 H9 ZLY 57 ZLY H10 H10 H 0 1 N N N 9.420 83.335 2.597 -0.443 -2.558 0.370 H10 ZLY 58 ZLY H11 H11 H 0 1 N N N 11.065 82.860 2.054 -1.218 -1.039 -0.139 H11 ZLY 59 ZLY H12 H12 H 0 1 N N N 11.020 84.360 0.828 -0.871 -4.603 0.074 H12 ZLY 60 ZLY H13 H13 H 0 1 N N N 12.728 88.227 0.222 -3.388 -7.607 1.732 H13 ZLY 61 ZLY H14 H14 H 0 1 N N N 12.838 88.576 2.667 -5.117 -5.966 2.233 H14 ZLY 62 ZLY H15 H15 H 0 1 N N N 12.449 87.758 4.962 -5.900 -3.613 2.180 H15 ZLY 63 ZLY H16 H16 H 0 1 N N N 10.741 83.884 5.587 -3.383 -0.609 0.521 H16 ZLY 64 ZLY H17 H17 H 0 1 N N N 12.007 79.311 3.610 0.625 -0.538 -2.346 H17 ZLY 65 ZLY H18 H18 H 0 1 N N N 11.760 80.277 6.429 2.203 -2.322 -0.465 H18 ZLY 66 ZLY H19 H19 H 0 1 N N N 14.737 78.741 9.858 7.033 0.419 -2.116 H19 ZLY 67 ZLY H20 H20 H 0 1 N N N 16.916 77.341 10.030 8.470 -2.214 0.002 H20 ZLY 68 ZLY H21 H21 H 0 1 N N N 17.835 77.108 8.505 8.759 -1.117 -1.369 H21 ZLY 69 ZLY H22 H22 H 0 1 N N N 16.612 76.967 6.433 6.341 -2.207 1.172 H22 ZLY 70 ZLY H23 H23 H 0 1 N N N 14.470 77.133 5.188 3.927 -1.746 1.033 H23 ZLY 71 ZLY H24 H24 H 0 1 N N N 12.984 76.571 4.977 1.827 -0.327 1.272 H24 ZLY 72 ZLY H25 H25 H 0 1 N N N 12.087 77.750 3.961 2.984 1.012 1.085 H25 ZLY 73 ZLY H26 H26 H 0 1 N N N 10.098 74.188 6.272 0.362 3.694 -0.752 H26 ZLY 74 ZLY H27 H27 H 0 1 N N N 9.164 75.295 7.335 -1.131 4.573 -0.358 H27 ZLY 75 ZLY H28 H28 H 0 1 N N N 7.131 73.793 6.954 1.440 4.811 1.254 H28 ZLY 76 ZLY H29 H29 H 0 1 N N N 8.477 73.012 7.850 0.980 5.926 -0.054 H29 ZLY 77 ZLY H30 H30 H 0 1 N N N 7.292 71.857 5.684 0.302 6.298 2.572 H30 ZLY 78 ZLY H31 H31 H 0 1 N N N 9.025 71.612 6.087 -0.636 6.944 1.205 H31 ZLY 79 ZLY H32 H32 H 0 1 N N N 8.323 72.282 3.627 -1.927 5.599 3.004 H32 ZLY 80 ZLY H33 H33 H 0 1 N N N 9.769 73.031 4.386 -2.216 5.168 1.304 H33 ZLY 81 ZLY H34 H34 H 0 1 N N N 8.383 74.724 3.187 -1.833 3.180 2.829 H34 ZLY 82 ZLY H35 H35 H 0 1 N N N 6.974 74.303 4.219 -0.175 3.773 3.091 H35 ZLY 83 ZLY H36 H36 H 0 1 N N N 6.021 78.561 4.647 -3.870 1.007 -0.090 H36 ZLY 84 ZLY H37 H37 H 0 1 N N N 5.805 80.349 6.335 -4.054 2.834 -2.527 H37 ZLY 85 ZLY H38 H38 H 0 1 N N N 5.831 78.710 7.070 -5.132 1.450 -2.227 H38 ZLY 86 ZLY H39 H39 H 0 1 N N N 9.307 78.732 3.835 -3.606 -1.102 -1.114 H39 ZLY 87 ZLY H40 H40 H 0 1 N N N 9.375 77.184 6.059 1.122 2.315 2.212 H40 ZLY 88 ZLY H41 H41 H 0 1 N N N 7.995 81.245 9.126 -6.595 3.711 -2.335 H41 ZLY 89 ZLY H42 H42 H 0 1 N N N 6.360 81.313 8.559 -6.955 4.321 -0.812 H42 ZLY 90 ZLY H43 H43 H 0 1 N N N 8.415 77.892 6.301 -2.485 3.474 -0.766 H43 ZLY 91 ZLY H44 H44 H 0 1 N N N 18.905 80.262 10.060 10.650 0.388 1.389 H44 ZLY 92 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZLY C10 C11 DOUB Y N 1 ZLY C10 C09 SING Y N 2 ZLY C11 C12 SING Y N 3 ZLY C09 C08 DOUB Y N 4 ZLY C12 C13 DOUB Y N 5 ZLY C08 C13 SING Y N 6 ZLY C08 C07 SING Y N 7 ZLY C06 C07 SING N N 8 ZLY C06 C05 SING N N 9 ZLY C04 N03 SING N N 10 ZLY C04 C05 SING N N 11 ZLY C13 C14 SING Y N 12 ZLY C07 C16 DOUB Y N 13 ZLY N03 C02 SING N N 14 ZLY C05 C17 SING N N 15 ZLY O48 C47 DOUB N N 16 ZLY O40 C32 DOUB N N 17 ZLY C39 C38 SING N N 18 ZLY C39 C34 SING N N 19 ZLY C17 C18 SING N N 20 ZLY O01 C02 DOUB N N 21 ZLY C38 C37 SING N N 22 ZLY C18 C19 DOUB N E 23 ZLY C02 C41 SING N N 24 ZLY C14 C15 DOUB Y N 25 ZLY C47 C34 SING N N 26 ZLY C47 N46 SING N N 27 ZLY C32 C31 SING N N 28 ZLY C32 N33 SING N N 29 ZLY C31 C20 SING N N 30 ZLY C16 C15 SING Y N 31 ZLY C41 N46 SING N N 32 ZLY C41 C42 SING N N 33 ZLY C34 N33 SING N N 34 ZLY C34 C35 SING N N 35 ZLY C19 C20 SING N N 36 ZLY C37 C36 SING N N 37 ZLY C20 C21 SING N N 38 ZLY C30 C21 DOUB Y N 39 ZLY C30 C29 SING Y N 40 ZLY C35 C36 SING N N 41 ZLY C42 C43 SING N N 42 ZLY C21 C22 SING Y N 43 ZLY C29 C24 DOUB Y N 44 ZLY O45 C43 DOUB N N 45 ZLY C43 N44 SING N N 46 ZLY C22 C23 DOUB Y N 47 ZLY C24 C23 SING Y N 48 ZLY C24 C25 SING N N 49 ZLY O28 C26 DOUB N N 50 ZLY C25 C26 SING N N 51 ZLY C26 O27 SING N N 52 ZLY C10 H1 SING N N 53 ZLY C15 H2 SING N N 54 ZLY C17 H3 SING N N 55 ZLY C17 H4 SING N N 56 ZLY C20 H5 SING N N 57 ZLY C22 H6 SING N N 58 ZLY C04 H7 SING N N 59 ZLY C04 H8 SING N N 60 ZLY C05 H9 SING N N 61 ZLY C06 H10 SING N N 62 ZLY C06 H11 SING N N 63 ZLY C09 H12 SING N N 64 ZLY C11 H13 SING N N 65 ZLY C12 H14 SING N N 66 ZLY C14 H15 SING N N 67 ZLY C16 H16 SING N N 68 ZLY C18 H17 SING N N 69 ZLY C19 H18 SING N N 70 ZLY C23 H19 SING N N 71 ZLY C25 H20 SING N N 72 ZLY C25 H21 SING N N 73 ZLY C29 H22 SING N N 74 ZLY C30 H23 SING N N 75 ZLY C31 H24 SING N N 76 ZLY C31 H25 SING N N 77 ZLY C35 H26 SING N N 78 ZLY C35 H27 SING N N 79 ZLY C36 H28 SING N N 80 ZLY C36 H29 SING N N 81 ZLY C37 H30 SING N N 82 ZLY C37 H31 SING N N 83 ZLY C38 H32 SING N N 84 ZLY C38 H33 SING N N 85 ZLY C39 H34 SING N N 86 ZLY C39 H35 SING N N 87 ZLY C41 H36 SING N N 88 ZLY C42 H37 SING N N 89 ZLY C42 H38 SING N N 90 ZLY N03 H39 SING N N 91 ZLY N33 H40 SING N N 92 ZLY N44 H41 SING N N 93 ZLY N44 H42 SING N N 94 ZLY N46 H43 SING N N 95 ZLY O27 H44 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZLY SMILES ACDLabs 12.01 "O=C(O)Cc1ccc(cc1)C1CC(=O)NC2(CCCCC2)C(=O)NC(CC(N)=O)C(=O)NCC(Cc2cccc3ccccc32)CC=C1" ZLY InChI InChI 1.03 "InChI=1S/C38H44N4O6/c39-33(43)23-32-36(47)40-24-26(20-30-12-7-10-28-9-2-3-13-31(28)30)8-6-11-29(27-16-14-25(15-17-27)21-35(45)46)22-34(44)42-38(37(48)41-32)18-4-1-5-19-38/h2-3,6-7,9-17,26,29,32H,1,4-5,8,18-24H2,(H2,39,43)(H,40,47)(H,41,48)(H,42,44)(H,45,46)/b11-6+/t26-,29-,32-/m0/s1" ZLY InChIKey InChI 1.03 ZYRZDVCTSBJOQD-GZNVFMSSSA-N ZLY SMILES_CANONICAL CACTVS 3.385 "NC(=O)C[C@@H]1NC(=O)C2(CCCCC2)NC(=O)C[C@H](/C=C/C[C@H](CNC1=O)Cc3cccc4ccccc34)c5ccc(CC(O)=O)cc5" ZLY SMILES CACTVS 3.385 "NC(=O)C[CH]1NC(=O)C2(CCCCC2)NC(=O)C[CH](C=CC[CH](CNC1=O)Cc3cccc4ccccc34)c5ccc(CC(O)=O)cc5" ZLY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2C[C@@H]3C/C=C/[C@@H](CC(=O)NC4(CCCCC4)C(=O)N[C@H](C(=O)NC3)CC(=O)N)c5ccc(cc5)CC(=O)O" ZLY SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2CC3CC=CC(CC(=O)NC4(CCCCC4)C(=O)NC(C(=O)NC3)CC(=O)N)c5ccc(cc5)CC(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZLY "SYSTEMATIC NAME" ACDLabs 12.01 "(4-{(10R,11E,14S,18S)-18-(2-amino-2-oxoethyl)-14-[(naphthalen-1-yl)methyl]-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl}phenyl)acetic acid" ZLY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-[(10~{R},11~{E},14~{S},18~{S})-18-(2-azanyl-2-oxidanylidene-ethyl)-14-(naphthalen-1-ylmethyl)-8,17,20-tris(oxidanylidene)-7,16,19-triazaspiro[5.14]icos-11-en-10-yl]phenyl]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZLY "Create component" 2021-05-06 RCSB ZLY "Initial release" 2021-09-22 RCSB ##