data_ZM1 # _chem_comp.id ZM1 _chem_comp.name "2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H16 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-06 _chem_comp.pdbx_modified_date 2022-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZM1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MQT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZM1 C10 C1 C 0 1 N N N -61.847 381.785 -43.597 -1.868 0.094 0.037 C10 ZM1 1 ZM1 C01 C2 C 0 1 N N N -65.340 387.742 -41.867 4.221 2.954 -0.596 C01 ZM1 2 ZM1 C02 C3 C 0 1 N N N -63.839 387.636 -42.006 4.047 1.608 0.060 C02 ZM1 3 ZM1 N03 N1 N 0 1 N N N -63.288 386.463 -42.685 3.245 0.683 -0.504 N03 ZM1 4 ZM1 C04 C4 C 0 1 N N S -61.844 386.293 -42.825 3.076 -0.625 0.133 C04 ZM1 5 ZM1 C05 C5 C 0 1 N N R -61.434 384.841 -42.542 1.733 -1.227 -0.285 C05 ZM1 6 ZM1 O06 O1 O 0 1 N N N -62.434 384.152 -41.821 1.552 -2.487 0.363 O06 ZM1 7 ZM1 C07 C6 C 0 1 N N R -61.222 384.154 -43.888 0.601 -0.279 0.119 C07 ZM1 8 ZM1 O08 O2 O 0 1 N N N -62.453 384.072 -44.561 0.650 -0.054 1.529 O08 ZM1 9 ZM1 C09 C7 C 0 1 N N N -60.680 382.755 -43.626 -0.745 -0.905 -0.252 C09 ZM1 10 ZM1 O11 O3 O 0 1 N N N -62.410 381.834 -42.324 -3.125 -0.491 -0.309 O11 ZM1 11 ZM1 P12 P1 P 0 1 N N N -61.929 380.579 -41.365 -4.528 0.280 -0.135 P12 ZM1 12 ZM1 O13 O4 O 0 1 N N N -60.751 381.120 -40.563 -4.803 0.547 1.428 O13 ZM1 13 ZM1 O14 O5 O 0 1 N N N -61.577 379.393 -42.232 -4.473 1.573 -0.854 O14 ZM1 14 ZM1 O15 O6 O 0 1 N N N -63.119 380.145 -40.526 -5.715 -0.622 -0.743 O15 ZM1 15 ZM1 C16 C8 C 0 1 N N N -61.366 386.707 -44.230 4.192 -1.541 -0.297 C16 ZM1 16 ZM1 O17 O7 O 0 1 N N N -60.224 386.707 -44.561 5.080 -1.122 -1.000 O17 ZM1 17 ZM1 O18 O8 O 0 1 N N N -63.176 388.502 -41.539 4.629 1.357 1.094 O18 ZM1 18 ZM1 H1 H1 H 0 1 N N N -62.595 382.077 -44.349 -1.865 0.347 1.097 H1 ZM1 19 ZM1 H2 H2 H 0 1 N N N -61.492 380.766 -43.810 -1.712 0.997 -0.553 H2 ZM1 20 ZM1 H3 H3 H 0 1 N N N -65.594 388.663 -41.321 5.060 2.914 -1.291 H3 ZM1 21 ZM1 H4 H4 H 0 1 N N N -65.800 387.770 -42.866 3.312 3.214 -1.138 H4 ZM1 22 ZM1 H5 H5 H 0 1 N N N -65.719 386.871 -41.313 4.417 3.707 0.168 H5 ZM1 23 ZM1 H6 H6 H 0 1 N N N -63.906 385.771 -43.057 2.779 0.884 -1.331 H6 ZM1 24 ZM1 H7 H7 H 0 1 N N N -61.337 386.938 -42.092 3.099 -0.508 1.217 H7 ZM1 25 ZM1 H8 H8 H 0 1 N N N -60.485 384.840 -41.986 1.719 -1.368 -1.366 H8 ZM1 26 ZM1 H9 H9 H 0 1 N N N -62.569 384.576 -40.982 1.554 -2.437 1.328 H9 ZM1 27 ZM1 H10 H10 H 0 1 N N N -60.488 384.725 -44.476 0.718 0.670 -0.405 H10 ZM1 28 ZM1 H11 H11 H 0 1 N N N -62.786 384.947 -44.721 0.552 -0.857 2.059 H11 ZM1 29 ZM1 H12 H12 H 0 1 N N N -59.981 382.471 -44.427 -0.901 -1.808 0.338 H12 ZM1 30 ZM1 H13 H13 H 0 1 N N N -60.156 382.735 -42.659 -0.748 -1.158 -1.312 H13 ZM1 31 ZM1 H14 H14 H 0 1 N N N -59.976 380.604 -40.751 -4.852 -0.258 1.962 H14 ZM1 32 ZM1 H15 H15 H 0 1 N N N -63.351 379.250 -40.744 -6.591 -0.219 -0.672 H15 ZM1 33 ZM1 H16 H16 H 0 1 N N N -62.108 387.014 -44.953 4.198 -2.573 0.023 H16 ZM1 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZM1 O17 C16 DOUB N N 1 ZM1 O08 C07 SING N N 2 ZM1 C16 C04 SING N N 3 ZM1 C07 C09 SING N N 4 ZM1 C07 C05 SING N N 5 ZM1 C09 C10 SING N N 6 ZM1 C10 O11 SING N N 7 ZM1 C04 N03 SING N N 8 ZM1 C04 C05 SING N N 9 ZM1 N03 C02 SING N N 10 ZM1 C05 O06 SING N N 11 ZM1 O11 P12 SING N N 12 ZM1 O14 P12 DOUB N N 13 ZM1 C02 C01 SING N N 14 ZM1 C02 O18 DOUB N N 15 ZM1 P12 O13 SING N N 16 ZM1 P12 O15 SING N N 17 ZM1 C10 H1 SING N N 18 ZM1 C10 H2 SING N N 19 ZM1 C01 H3 SING N N 20 ZM1 C01 H4 SING N N 21 ZM1 C01 H5 SING N N 22 ZM1 N03 H6 SING N N 23 ZM1 C04 H7 SING N N 24 ZM1 C05 H8 SING N N 25 ZM1 O06 H9 SING N N 26 ZM1 C07 H10 SING N N 27 ZM1 O08 H11 SING N N 28 ZM1 C09 H12 SING N N 29 ZM1 C09 H13 SING N N 30 ZM1 O13 H14 SING N N 31 ZM1 O15 H15 SING N N 32 ZM1 C16 H16 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZM1 SMILES ACDLabs 12.01 "O=P(O)(O)OCCC(O)C(O)C(C=O)NC(C)=O" ZM1 InChI InChI 1.03 "InChI=1S/C8H16NO8P/c1-5(11)9-6(4-10)8(13)7(12)2-3-17-18(14,15)16/h4,6-8,12-13H,2-3H2,1H3,(H,9,11)(H2,14,15,16)/t6-,7-,8-/m1/s1" ZM1 InChIKey InChI 1.03 SJEDNRVDWMBCDP-BWZBUEFSSA-N ZM1 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H](C=O)[C@@H](O)[C@H](O)CCO[P](O)(O)=O" ZM1 SMILES CACTVS 3.385 "CC(=O)N[CH](C=O)[CH](O)[CH](O)CCO[P](O)(O)=O" ZM1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H](C=O)[C@H]([C@@H](CCOP(=O)(O)O)O)O" ZM1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(C=O)C(C(CCOP(=O)(O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZM1 "SYSTEMATIC NAME" ACDLabs 12.01 "2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose" ZM1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R},4~{R},5~{S})-5-acetamido-3,4-bis(oxidanyl)-6-oxidanylidene-hexyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZM1 "Create component" 2021-05-06 RCSB ZM1 "Initial release" 2022-04-20 RCSB ##