data_ZM5 # _chem_comp.id ZM5 _chem_comp.name "(2R)-2-(tridecanoyloxy)propyl hexadecanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H62 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3-oxidanyl-2-tridecanoyloxy-propyl) hexadecanoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 526.832 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZM5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZM5 C1 C1 C 0 1 N N N N N N 9.935 5.205 -4.727 18.472 4.008 0.443 C1 ZM5 1 ZM5 C2 C2 C 0 1 N N N N N N 9.167 4.259 -3.831 17.452 3.178 -0.340 C2 ZM5 2 ZM5 C3 C3 C 0 1 N N N N N N 10.034 3.212 -3.150 16.124 3.155 0.419 C3 ZM5 3 ZM5 C4 C4 C 0 1 N N N N N N 9.267 2.191 -2.321 15.104 2.325 -0.364 C4 ZM5 4 ZM5 C5 C5 C 0 1 N N N N N N 8.617 2.758 -1.065 13.775 2.303 0.394 C5 ZM5 5 ZM5 C6 C6 C 0 1 N N N N N N 8.036 1.708 -0.127 12.755 1.473 -0.388 C6 ZM5 6 ZM5 C7 C7 C 0 1 N N N N N N 6.822 0.972 -0.679 11.427 1.450 0.370 C7 ZM5 7 ZM5 C8 C8 C 0 1 N N N N N N 6.160 0.019 0.308 10.407 0.620 -0.412 C8 ZM5 8 ZM5 C9 C9 C 0 1 N N N N N N 4.923 -0.687 -0.231 9.078 0.598 0.346 C9 ZM5 9 ZM5 C10 C10 C 0 1 N N N N N N 4.345 -1.745 0.700 8.059 -0.232 -0.437 C10 ZM5 10 ZM5 C11 C11 C 0 1 N N N N N N 3.732 -1.192 1.980 6.730 -0.255 0.321 C11 ZM5 11 ZM5 C12 C12 C 0 1 N N N N N N 2.890 -2.193 2.760 5.710 -1.085 -0.461 C12 ZM5 12 ZM5 C13 C13 C 0 1 N N N N N N 3.673 -3.380 3.308 4.381 -1.107 0.297 C13 ZM5 13 ZM5 C14 C14 C 0 1 N N N N N N 2.932 -4.234 4.333 3.362 -1.938 -0.485 C14 ZM5 14 ZM5 C15 C15 C 0 1 N N N N N N 2.030 -5.302 3.728 2.033 -1.960 0.273 C15 ZM5 15 ZM5 C16 C16 C 0 1 N N N N N N 0.692 -4.786 3.279 1.029 -2.777 -0.498 C16 ZM5 16 ZM5 O1 O1 O 0 1 N N N N N N -0.105 -4.257 4.019 1.344 -3.290 -1.546 O1 ZM5 17 ZM5 O2 O2 O 0 1 N N N N N N 0.503 -4.976 1.955 -0.215 -2.937 -0.020 O2 ZM5 18 ZM5 C17 C17 C 0 1 N N N N N N -0.750 -4.554 1.363 -1.130 -3.737 -0.815 C17 ZM5 19 ZM5 C18 C18 C 0 1 N N R N N N -0.742 -3.060 1.090 -2.489 -3.805 -0.115 C18 ZM5 20 ZM5 C19 C19 C 0 1 N N N N N N 0.197 -2.682 -0.041 -2.303 -4.327 1.311 C19 ZM5 21 ZM5 O3 O3 O 0 1 N Y N N N N -0.288 -3.140 -1.296 -1.349 -3.513 1.996 O3 ZM5 22 ZM5 O4 O4 O 0 1 N N N N N N -2.104 -2.653 0.760 -3.077 -2.478 -0.072 O4 ZM5 23 ZM5 C20 C20 C 0 1 N N N N N N -2.480 -1.364 0.841 -4.418 -2.406 -0.089 C20 ZM5 24 ZM5 O5 O5 O 0 1 N N N N N N -1.764 -0.456 1.196 -5.077 -3.417 -0.138 O5 ZM5 25 ZM5 C21 C21 C 0 1 N N N N N N -3.905 -1.158 0.420 -5.100 -1.063 -0.046 C21 ZM5 26 ZM5 C22 C22 C 0 1 N N N N N N -4.911 -1.980 1.207 -6.617 -1.260 -0.075 C22 ZM5 27 ZM5 C23 C23 C 0 1 N N N N N N -6.352 -1.581 0.928 -7.310 0.103 -0.032 C23 ZM5 28 ZM5 C24 C24 C 0 1 N N N N N N -6.829 -1.867 -0.491 -8.827 -0.094 -0.062 C24 ZM5 29 ZM5 C25 C25 C 0 1 N N N N N N -8.322 -1.666 -0.724 -9.519 1.269 -0.018 C25 ZM5 30 ZM5 C26 C26 C 0 1 N N N N N N -8.844 -0.254 -0.488 -11.036 1.071 -0.048 C26 ZM5 31 ZM5 C27 C27 C 0 1 N N N N N N -8.232 0.818 -1.380 -11.729 2.435 -0.004 C27 ZM5 32 ZM5 C28 C28 C 0 1 N N N N N N -8.933 2.169 -1.318 -13.246 2.237 -0.034 C28 ZM5 33 ZM5 C29 C29 C 0 1 N N N N N N -8.883 2.844 0.047 -13.939 3.601 0.009 C29 ZM5 34 ZM5 C30 C30 C 0 1 N N N N N N -9.346 4.296 0.062 -15.456 3.403 -0.020 C30 ZM5 35 ZM5 C31 C31 C 0 1 N N N N N N -8.234 5.333 0.024 -16.149 4.767 0.023 C31 ZM5 36 ZM5 C32 C32 C 0 1 N N N N N N -7.471 5.373 -1.281 -17.666 4.569 -0.006 C32 ZM5 37 ZM5 H1 H1 H 0 1 N N N N N N 9.240 5.928 -5.180 18.101 5.027 0.556 H1 ZM5 38 ZM5 H2 H2 H 0 1 N N N N N N 10.688 5.743 -4.132 18.623 3.565 1.427 H2 ZM5 39 ZM5 H3 H3 H 0 1 N N N N N N 10.436 4.632 -5.521 19.419 4.024 -0.097 H3 ZM5 40 ZM5 H4 H4 H 0 1 N N N N N N 8.664 4.851 -3.052 17.302 3.621 -1.324 H4 ZM5 41 ZM5 H5 H5 H 0 1 N N N N N N 8.413 3.740 -4.441 17.823 2.159 -0.453 H5 ZM5 42 ZM5 H6 H6 H 0 1 N N N N N N 10.593 2.671 -3.928 16.274 2.712 1.403 H6 ZM5 43 ZM5 H7 H7 H 0 1 N N N N N N 10.740 3.732 -2.486 15.753 4.174 0.531 H7 ZM5 44 ZM5 H8 H8 H 0 1 N N N N N N 8.476 1.760 -2.952 14.953 2.768 -1.348 H8 ZM5 45 ZM5 H9 H9 H 0 1 N N N N N N 9.967 1.399 -2.018 15.475 1.306 -0.477 H9 ZM5 46 ZM5 H10 H10 H 0 1 N N N N N N 9.377 3.330 -0.513 13.926 1.860 1.379 H10 ZM5 47 ZM5 H11 H11 H 0 1 N N N N N N 7.804 3.432 -1.373 13.404 3.322 0.507 H11 ZM5 48 ZM5 H12 H12 H 0 1 N N N N N N 8.820 0.966 0.087 12.605 1.916 -1.373 H12 ZM5 49 ZM5 H13 H13 H 0 1 N N N N N N 7.740 2.208 0.807 13.127 0.454 -0.501 H13 ZM5 50 ZM5 H14 H14 H 0 1 N N N N N N 6.077 1.720 -0.987 11.577 1.007 1.354 H14 ZM5 51 ZM5 H15 H15 H 0 1 N N N N N N 7.142 0.391 -1.556 11.056 2.469 0.483 H15 ZM5 52 ZM5 H16 H16 H 0 1 N N N N N N 6.896 -0.747 0.593 10.257 1.063 -1.397 H16 ZM5 53 ZM5 H17 H17 H 0 1 N N N N N N 5.867 0.595 1.198 10.778 -0.399 -0.525 H17 ZM5 54 ZM5 H18 H18 H 0 1 N N N N N N 4.147 0.071 -0.414 9.229 0.155 1.330 H18 ZM5 55 ZM5 H19 H19 H 0 1 N N N N N N 5.191 -1.174 -1.180 8.707 1.617 0.459 H19 ZM5 56 ZM5 H20 H20 H 0 1 N N N N N N 3.564 -2.294 0.154 7.908 0.211 -1.421 H20 ZM5 57 ZM5 H21 H21 H 0 1 N N N N N N 5.153 -2.437 0.977 8.430 -1.251 -0.550 H21 ZM5 58 ZM5 H22 H22 H 0 1 N N N N N N 4.549 -0.848 2.632 6.881 -0.698 1.306 H22 ZM5 59 ZM5 H23 H23 H 0 1 N N N N N N 3.092 -0.338 1.713 6.359 0.764 0.434 H23 ZM5 60 ZM5 H24 H24 H 0 1 N N N N N N 2.426 -1.666 3.607 5.560 -0.642 -1.445 H24 ZM5 61 ZM5 H25 H25 H 0 1 N N N N N N 2.105 -2.577 2.092 6.081 -2.104 -0.574 H25 ZM5 62 ZM5 H26 H26 H 0 1 N N N N N N 3.946 -4.027 2.461 4.532 -1.550 1.281 H26 ZM5 63 ZM5 H27 H27 H 0 1 N N N N N N 4.586 -2.994 3.784 4.011 -0.089 0.410 H27 ZM5 64 ZM5 H28 H28 H 0 1 N N N N N N 3.678 -4.733 4.968 3.211 -1.494 -1.470 H28 ZM5 65 ZM5 H29 H29 H 0 1 N N N N N N 2.311 -3.569 4.951 3.733 -2.956 -0.598 H29 ZM5 66 ZM5 H30 H30 H 0 1 N N N N N N 2.543 -5.737 2.858 2.184 -2.403 1.257 H30 ZM5 67 ZM5 H31 H31 H 0 1 N N N N N N 1.864 -6.084 4.484 1.662 -0.941 0.386 H31 ZM5 68 ZM5 H32 H32 H 0 1 N N N N N N -0.901 -5.093 0.416 -1.249 -3.282 -1.798 H32 ZM5 69 ZM5 H33 H33 H 0 1 N N N N N N -1.573 -4.790 2.054 -0.728 -4.744 -0.927 H33 ZM5 70 ZM5 H34 H34 H 0 1 N N N N N N -0.418 -2.539 2.003 -3.147 -4.477 -0.666 H34 ZM5 71 ZM5 H35 H35 H 0 1 N N N N N N 0.295 -1.587 -0.074 -3.256 -4.292 1.838 H35 ZM5 72 ZM5 H36 H36 H 0 1 N N N N N N 1.183 -3.132 0.147 -1.944 -5.356 1.277 H36 ZM5 73 ZM5 H37 H37 H 0 1 N Y N N N N 0.320 -2.889 -1.982 -1.181 -3.786 2.908 H37 ZM5 74 ZM5 H38 H38 H 0 1 N N N N N N -4.153 -0.094 0.549 -4.819 -0.542 0.870 H38 ZM5 75 ZM5 H39 H39 H 0 1 N N N N N N -3.994 -1.429 -0.642 -4.794 -0.472 -0.909 H39 ZM5 76 ZM5 H40 H40 H 0 1 N N N N N N -4.783 -3.040 0.941 -6.898 -1.781 -0.991 H40 ZM5 77 ZM5 H41 H41 H 0 1 N N N N N N -4.711 -1.845 2.280 -6.923 -1.851 0.788 H41 ZM5 78 ZM5 H42 H42 H 0 1 N N N N N N -7.001 -2.131 1.625 -7.029 0.624 0.883 H42 ZM5 79 ZM5 H43 H43 H 0 1 N N N N N N -6.450 -0.501 1.111 -7.003 0.694 -0.895 H43 ZM5 80 ZM5 H44 H44 H 0 1 N N N N N N -6.284 -1.199 -1.175 -9.107 -0.616 -0.977 H44 ZM5 81 ZM5 H45 H45 H 0 1 N N N N N N -6.585 -2.913 -0.728 -9.133 -0.685 0.802 H45 ZM5 82 ZM5 H46 H46 H 0 1 N N N N N N -8.541 -1.937 -1.767 -9.239 1.790 0.897 H46 ZM5 83 ZM5 H47 H47 H 0 1 N N N N N N -8.864 -2.344 -0.048 -9.213 1.860 -0.881 H47 ZM5 84 ZM5 H48 H48 H 0 1 N N N N N N -9.931 -0.259 -0.658 -11.317 0.550 -0.963 H48 ZM5 85 ZM5 H49 H49 H 0 1 N N N N N N -8.638 0.015 0.559 -11.343 0.481 0.815 H49 ZM5 86 ZM5 H50 H50 H 0 1 N N N N N N -7.184 0.961 -1.076 -11.448 2.956 0.911 H50 ZM5 87 ZM5 H51 H51 H 0 1 N N N N N N -8.267 0.461 -2.420 -11.423 3.026 -0.868 H51 ZM5 88 ZM5 H52 H52 H 0 1 N N N N N N -8.456 2.838 -2.050 -13.527 1.716 -0.949 H52 ZM5 89 ZM5 H53 H53 H 0 1 N N N N N N -9.989 2.021 -1.590 -13.552 1.646 0.829 H53 ZM5 90 ZM5 H54 H54 H 0 1 N N N N N N -9.525 2.273 0.734 -13.658 4.122 0.925 H54 ZM5 91 ZM5 H55 H55 H 0 1 N N N N N N -7.844 2.813 0.406 -13.632 4.192 -0.854 H55 ZM5 92 ZM5 H56 H56 H 0 1 N N N N N N -9.990 4.456 -0.815 -15.736 2.882 -0.936 H56 ZM5 93 ZM5 H57 H57 H 0 1 N N N N N N -9.930 4.457 0.980 -15.762 2.812 0.843 H57 ZM5 94 ZM5 H58 H58 H 0 1 N N N N N N -8.680 6.324 0.194 -15.868 5.288 0.938 H58 ZM5 95 ZM5 H59 H59 H 0 1 N N N N N N -7.523 5.107 0.833 -15.842 5.358 -0.840 H59 ZM5 96 ZM5 H60 H60 H 0 1 N N N N N N -6.689 6.145 -1.226 -17.946 4.048 -0.922 H60 ZM5 97 ZM5 H61 H61 H 0 1 N N N N N N -7.006 4.393 -1.464 -17.972 3.978 0.857 H61 ZM5 98 ZM5 H62 H62 H 0 1 N N N N N N -8.163 5.610 -2.103 -18.159 5.541 0.024 H62 ZM5 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZM5 C1 C2 SING N N 1 ZM5 C2 C3 SING N N 2 ZM5 C3 C4 SING N N 3 ZM5 C4 C5 SING N N 4 ZM5 C5 C6 SING N N 5 ZM5 C6 C7 SING N N 6 ZM5 C7 C8 SING N N 7 ZM5 C8 C9 SING N N 8 ZM5 C9 C10 SING N N 9 ZM5 C10 C11 SING N N 10 ZM5 C11 C12 SING N N 11 ZM5 C12 C13 SING N N 12 ZM5 C13 C14 SING N N 13 ZM5 C14 C15 SING N N 14 ZM5 C15 C16 SING N N 15 ZM5 C16 O1 DOUB N N 16 ZM5 C16 O2 SING N N 17 ZM5 O2 C17 SING N N 18 ZM5 C17 C18 SING N N 19 ZM5 C18 C19 SING N N 20 ZM5 C19 O3 SING N N 21 ZM5 C18 O4 SING N N 22 ZM5 O4 C20 SING N N 23 ZM5 C20 O5 DOUB N N 24 ZM5 C20 C21 SING N N 25 ZM5 C21 C22 SING N N 26 ZM5 C22 C23 SING N N 27 ZM5 C23 C24 SING N N 28 ZM5 C24 C25 SING N N 29 ZM5 C25 C26 SING N N 30 ZM5 C26 C27 SING N N 31 ZM5 C27 C28 SING N N 32 ZM5 C28 C29 SING N N 33 ZM5 C29 C30 SING N N 34 ZM5 C30 C31 SING N N 35 ZM5 C31 C32 SING N N 36 ZM5 C1 H1 SING N N 37 ZM5 C1 H2 SING N N 38 ZM5 C1 H3 SING N N 39 ZM5 C2 H4 SING N N 40 ZM5 C2 H5 SING N N 41 ZM5 C3 H6 SING N N 42 ZM5 C3 H7 SING N N 43 ZM5 C4 H8 SING N N 44 ZM5 C4 H9 SING N N 45 ZM5 C5 H10 SING N N 46 ZM5 C5 H11 SING N N 47 ZM5 C6 H12 SING N N 48 ZM5 C6 H13 SING N N 49 ZM5 C7 H14 SING N N 50 ZM5 C7 H15 SING N N 51 ZM5 C8 H16 SING N N 52 ZM5 C8 H17 SING N N 53 ZM5 C9 H18 SING N N 54 ZM5 C9 H19 SING N N 55 ZM5 C10 H20 SING N N 56 ZM5 C10 H21 SING N N 57 ZM5 C11 H22 SING N N 58 ZM5 C11 H23 SING N N 59 ZM5 C12 H24 SING N N 60 ZM5 C12 H25 SING N N 61 ZM5 C13 H26 SING N N 62 ZM5 C13 H27 SING N N 63 ZM5 C14 H28 SING N N 64 ZM5 C14 H29 SING N N 65 ZM5 C15 H30 SING N N 66 ZM5 C15 H31 SING N N 67 ZM5 C17 H32 SING N N 68 ZM5 C17 H33 SING N N 69 ZM5 C18 H34 SING N N 70 ZM5 C19 H35 SING N N 71 ZM5 C19 H36 SING N N 72 ZM5 O3 H37 SING N N 73 ZM5 C21 H38 SING N N 74 ZM5 C21 H39 SING N N 75 ZM5 C22 H40 SING N N 76 ZM5 C22 H41 SING N N 77 ZM5 C23 H42 SING N N 78 ZM5 C23 H43 SING N N 79 ZM5 C24 H44 SING N N 80 ZM5 C24 H45 SING N N 81 ZM5 C25 H46 SING N N 82 ZM5 C25 H47 SING N N 83 ZM5 C26 H48 SING N N 84 ZM5 C26 H49 SING N N 85 ZM5 C27 H50 SING N N 86 ZM5 C27 H51 SING N N 87 ZM5 C28 H52 SING N N 88 ZM5 C28 H53 SING N N 89 ZM5 C29 H54 SING N N 90 ZM5 C29 H55 SING N N 91 ZM5 C30 H56 SING N N 92 ZM5 C30 H57 SING N N 93 ZM5 C31 H58 SING N N 94 ZM5 C31 H59 SING N N 95 ZM5 C32 H60 SING N N 96 ZM5 C32 H61 SING N N 97 ZM5 C32 H62 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZM5 InChI InChI 1.06 "InChI=1S/C32H62O5/c1-3-5-7-9-11-13-15-16-17-19-20-22-24-26-31(34)36-29-30(28-33)37-32(35)27-25-23-21-18-14-12-10-8-6-4-2/h30,33H,3-29H2,1-2H3/t30-/m1/s1" ZM5 InChIKey InChI 1.06 ZMBQEERVAJRJTB-SSEXGKCCSA-N ZM5 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO)OC(=O)CCCCCCCCCCCC" ZM5 SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[CH](CO)OC(=O)CCCCCCCCCCCC" ZM5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OCC(CO)OC(=O)CCCCCCCCCCCC" ZM5 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OCC(CO)OC(=O)CCCCCCCCCCCC" # _pdbx_chem_comp_identifier.comp_id ZM5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3-oxidanyl-2-tridecanoyloxy-propyl) hexadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZM5 "Create component" 2024-02-14 PDBE ZM5 "Modify descriptor" 2024-02-14 PDBE ZM5 "Other modification" 2024-02-14 PDBE ZM5 "Initial release" 2024-04-17 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZM5 _pdbx_chem_comp_synonyms.name "(3-oxidanyl-2-tridecanoyloxy-propyl) hexadecanoate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #