data_ZMB # _chem_comp.id ZMB _chem_comp.name "methyl (2S)-3-[(2-acetamido-2-deoxy-beta-D-glucopyranosyl)oxy]-2-methylpropanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H23 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-14 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 321.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZMB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GEZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZMB C1 C1 C 0 1 N N N 30.614 64.675 -10.431 6.489 -0.841 0.452 C1 ZMB 1 ZMB C10 C2 C 0 1 N N R 31.939 63.239 -16.922 -3.162 0.438 0.397 C10 ZMB 2 ZMB C11 C3 C 0 1 N N R 31.677 63.411 -15.427 -1.810 0.993 -0.062 C11 ZMB 3 ZMB C12 C4 C 0 1 N N N 29.491 62.995 -14.295 -0.754 3.188 -0.009 C12 ZMB 4 ZMB C13 C5 C 0 1 N N N 28.555 61.925 -13.822 -0.508 4.523 0.647 C13 ZMB 5 ZMB C2 C6 C 0 1 N N N 31.523 62.551 -10.945 4.150 -0.430 0.255 C2 ZMB 6 ZMB C3 C7 C 0 1 N N S 32.756 61.795 -11.443 2.961 0.322 -0.284 C3 ZMB 7 ZMB C4 C8 C 0 1 N N N 32.316 60.455 -12.015 2.945 0.225 -1.811 C4 ZMB 8 ZMB C5 C9 C 0 1 N N N 33.607 62.585 -12.421 1.674 -0.285 0.280 C5 ZMB 9 ZMB C6 C10 C 0 1 N N R 32.970 63.099 -14.660 -0.703 0.015 0.337 C6 ZMB 10 ZMB C7 C11 C 0 1 N N R 34.359 63.740 -16.483 -2.198 -1.855 0.191 C7 ZMB 11 ZMB C8 C12 C 0 1 N N N 35.536 64.635 -16.790 -2.363 -3.227 -0.465 C8 ZMB 12 ZMB C9 C13 C 0 1 N N S 33.148 64.066 -17.354 -3.365 -0.951 -0.214 C9 ZMB 13 ZMB N1 N1 N 0 1 N N N 30.582 62.583 -14.958 -1.571 2.290 0.576 N1 ZMB 14 ZMB O1 O1 O 0 1 N N N 31.764 63.847 -10.735 5.392 -0.071 -0.106 O1 ZMB 15 ZMB O2 O2 O 0 1 N N N 30.450 62.025 -10.772 3.985 -1.358 1.012 O2 ZMB 16 ZMB O3 O3 O 0 1 N N N 32.725 63.294 -13.300 0.555 0.499 -0.138 O3 ZMB 17 ZMB O4 O4 O 0 1 N N N 34.022 63.952 -15.098 -0.970 -1.265 -0.239 O4 ZMB 18 ZMB O5 O5 O 0 1 N N N 36.679 64.315 -15.996 -1.338 -4.105 0.004 O5 ZMB 19 ZMB O6 O6 O 0 1 N N N 33.499 63.792 -18.708 -4.590 -1.510 0.266 O6 ZMB 20 ZMB O7 O7 O 0 1 N N N 30.785 63.569 -17.689 -4.209 1.310 -0.034 O7 ZMB 21 ZMB O8 O8 O 0 1 N N N 29.268 64.180 -14.079 -0.216 2.923 -1.063 O8 ZMB 22 ZMB H1 H1 H 0 1 N N N 30.940 65.715 -10.280 6.389 -1.885 0.155 H1 ZMB 23 ZMB H2 H2 H 0 1 N N N 29.900 64.632 -11.267 7.435 -0.447 0.080 H2 ZMB 24 ZMB H3 H3 H 0 1 N N N 30.129 64.306 -9.515 6.468 -0.768 1.540 H3 ZMB 25 ZMB H4 H4 H 0 1 N N N 32.186 62.181 -17.093 -3.175 0.363 1.485 H4 ZMB 26 ZMB H5 H5 H 0 1 N N N 31.426 64.467 -15.247 -1.816 1.116 -1.145 H5 ZMB 27 ZMB H6 H6 H 0 1 N N N 27.709 62.386 -13.292 -1.249 5.242 0.297 H6 ZMB 28 ZMB H7 H7 H 0 1 N N N 28.181 61.357 -14.686 -0.588 4.416 1.729 H7 ZMB 29 ZMB H8 H8 H 0 1 N N N 29.089 61.246 -13.141 0.491 4.875 0.390 H8 ZMB 30 ZMB H9 H9 H 0 1 N N N 33.382 61.583 -10.564 3.028 1.369 0.013 H9 ZMB 31 ZMB H10 H10 H 0 1 N N N 31.704 59.922 -11.272 2.085 0.769 -2.201 H10 ZMB 32 ZMB H11 H11 H 0 1 N N N 31.723 60.622 -12.926 3.861 0.657 -2.212 H11 ZMB 33 ZMB H12 H12 H 0 1 N N N 33.203 59.852 -12.260 2.877 -0.822 -2.107 H12 ZMB 34 ZMB H13 H13 H 0 1 N N N 34.242 61.900 -13.002 1.562 -1.304 -0.090 H13 ZMB 35 ZMB H14 H14 H 0 1 N N N 34.241 63.298 -11.873 1.724 -0.296 1.368 H14 ZMB 36 ZMB H15 H15 H 0 1 N N N 33.239 62.049 -14.850 -0.672 -0.075 1.423 H15 ZMB 37 ZMB H16 H16 H 0 1 N N N 34.648 62.691 -16.648 -2.186 -1.969 1.275 H16 ZMB 38 ZMB H17 H17 H 0 1 N N N 35.800 64.522 -17.852 -3.339 -3.638 -0.207 H17 ZMB 39 ZMB H18 H18 H 0 1 N N N 35.249 65.678 -16.593 -2.286 -3.124 -1.547 H18 ZMB 40 ZMB H19 H19 H 0 1 N N N 32.906 65.132 -17.235 -3.402 -0.869 -1.301 H19 ZMB 41 ZMB H20 H20 H 0 1 N N N 30.647 61.604 -15.149 -2.001 2.503 1.419 H20 ZMB 42 ZMB H21 H21 H 0 1 N N N 37.394 64.899 -16.220 -1.380 -4.996 -0.371 H21 ZMB 43 ZMB H22 H22 H 0 1 N N N 34.252 64.317 -18.953 -4.784 -2.391 -0.082 H22 ZMB 44 ZMB H23 H23 H 0 1 N N N 30.050 63.041 -17.400 -5.094 1.019 0.223 H23 ZMB 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZMB O6 C9 SING N N 1 ZMB O7 C10 SING N N 2 ZMB C9 C10 SING N N 3 ZMB C9 C7 SING N N 4 ZMB C10 C11 SING N N 5 ZMB C8 C7 SING N N 6 ZMB C8 O5 SING N N 7 ZMB C7 O4 SING N N 8 ZMB C11 N1 SING N N 9 ZMB C11 C6 SING N N 10 ZMB O4 C6 SING N N 11 ZMB N1 C12 SING N N 12 ZMB C6 O3 SING N N 13 ZMB C12 O8 DOUB N N 14 ZMB C12 C13 SING N N 15 ZMB O3 C5 SING N N 16 ZMB C5 C3 SING N N 17 ZMB C4 C3 SING N N 18 ZMB C3 C2 SING N N 19 ZMB C2 O2 DOUB N N 20 ZMB C2 O1 SING N N 21 ZMB O1 C1 SING N N 22 ZMB C1 H1 SING N N 23 ZMB C1 H2 SING N N 24 ZMB C1 H3 SING N N 25 ZMB C10 H4 SING N N 26 ZMB C11 H5 SING N N 27 ZMB C13 H6 SING N N 28 ZMB C13 H7 SING N N 29 ZMB C13 H8 SING N N 30 ZMB C3 H9 SING N N 31 ZMB C4 H10 SING N N 32 ZMB C4 H11 SING N N 33 ZMB C4 H12 SING N N 34 ZMB C5 H13 SING N N 35 ZMB C5 H14 SING N N 36 ZMB C6 H15 SING N N 37 ZMB C7 H16 SING N N 38 ZMB C8 H17 SING N N 39 ZMB C8 H18 SING N N 40 ZMB C9 H19 SING N N 41 ZMB N1 H20 SING N N 42 ZMB O5 H21 SING N N 43 ZMB O6 H22 SING N N 44 ZMB O7 H23 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZMB SMILES ACDLabs 12.01 "O=C(OC)C(C)COC1OC(CO)C(O)C(O)C1NC(C)=O" ZMB InChI InChI 1.06 "InChI=1S/C13H23NO8/c1-6(12(19)20-3)5-21-13-9(14-7(2)16)11(18)10(17)8(4-15)22-13/h6,8-11,13,15,17-18H,4-5H2,1-3H3,(H,14,16)/t6-,8+,9+,10+,11+,13+/m0/s1" ZMB InChIKey InChI 1.06 LMSXTPOWCBFQKY-BCPRKZQJSA-N ZMB SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](C)CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=O" ZMB SMILES CACTVS 3.385 "COC(=O)[CH](C)CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O" ZMB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C)C(=O)OC" ZMB SMILES "OpenEye OEToolkits" 2.0.7 "CC(COC1C(C(C(C(O1)CO)O)O)NC(=O)C)C(=O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZMB "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2S)-3-[(2-acetamido-2-deoxy-beta-D-glucopyranosyl)oxy]-2-methylpropanoate" ZMB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-methyl-propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZMB "Create component" 2023-03-14 RCSB ZMB "Initial release" 2023-05-24 RCSB #