data_ZMO
#
_chem_comp.id ZMO
_chem_comp.name "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (9Z)-octadec-9-enethioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H55 N2 O8 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-09-23
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 622.794
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZMO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3EJE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZMO O23 O23 O 0 1 N N N N N N 65.878 16.944 88.533 11.796 -4.280 -1.927 O23 ZMO 1
ZMO P24 P24 P 0 1 N N N N N N 66.094 17.102 90.185 11.419 -3.360 -0.661 P24 ZMO 2
ZMO O26 O26 O 0 1 N N N N N N 67.416 17.965 90.737 12.502 -3.435 0.344 O26 ZMO 3
ZMO O27 O27 O 0 1 N N N N N N 64.608 17.081 91.245 11.238 -1.834 -1.142 O27 ZMO 4
ZMO C28 C28 C 0 1 N N N N N N 63.821 18.263 91.354 11.003 -0.755 -0.235 C28 ZMO 5
ZMO C29 C29 C 0 1 N N N N N N 62.352 17.888 91.489 10.880 0.553 -1.019 C29 ZMO 6
ZMO C31 C31 C 0 1 N N N N N N 61.942 17.048 90.291 12.177 0.809 -1.790 C31 ZMO 7
ZMO C30 C30 C 0 1 N N N N N N 61.518 19.165 91.498 9.713 0.450 -2.003 C30 ZMO 8
ZMO C32 C32 C 0 1 N N S N N N 62.155 17.074 92.772 10.628 1.709 -0.048 C32 ZMO 9
ZMO O33 O33 O 0 1 N N N N N N 61.045 16.170 92.652 11.772 1.885 0.789 O33 ZMO 10
ZMO C34 C34 C 0 1 N N N N N N 61.973 17.983 93.954 9.425 1.395 0.804 C34 ZMO 11
ZMO O35 O35 O 0 1 N N N N N N 63.005 18.730 94.343 9.573 1.043 1.955 O35 ZMO 12
ZMO N36 N36 N 0 1 N N N N N N 60.869 18.047 94.575 8.186 1.506 0.287 N36 ZMO 13
ZMO C37 C37 C 0 1 N N N N N N 59.635 17.321 94.303 7.014 1.310 1.144 C37 ZMO 14
ZMO C38 C38 C 0 1 N N N N N N 58.593 17.886 95.254 5.740 1.490 0.316 C38 ZMO 15
ZMO C39 C39 C 0 1 N N N N N N 57.939 19.103 94.641 4.535 1.289 1.198 C39 ZMO 16
ZMO O40 O40 O 0 1 N N N N N N 58.683 20.116 94.208 4.681 1.027 2.374 O40 ZMO 17
ZMO N41 N41 N 0 1 N N N N N N 56.682 19.163 94.562 3.295 1.400 0.681 N41 ZMO 18
ZMO C42 C42 C 0 1 N N N N N N 55.884 20.250 94.015 2.124 1.204 1.539 C42 ZMO 19
ZMO C43 C43 C 0 1 N N N N N N 55.459 21.082 95.220 0.850 1.384 0.711 C43 ZMO 20
ZMO S1 S1 S 0 1 N N N N N N 53.910 21.861 94.891 -0.598 1.142 1.770 S1 ZMO 21
ZMO C1 C1 C 0 1 N N N N N N 53.908 22.552 93.264 -1.848 1.392 0.627 C1 ZMO 22
ZMO O1 O1 O 0 1 N N N N N N 55.053 22.961 92.729 -1.572 1.650 -0.526 O1 ZMO 23
ZMO C2 C2 C 0 1 N N N N N N 52.591 23.007 92.645 -3.289 1.292 1.054 C2 ZMO 24
ZMO C3 C3 C 0 1 N N N N N N 51.729 23.727 93.677 -4.197 1.557 -0.150 C3 ZMO 25
ZMO C4 C4 C 0 1 N N N N N N 50.594 24.495 93.016 -5.661 1.455 0.283 C4 ZMO 26
ZMO C5 C5 C 0 1 N N N N N N 49.249 23.884 93.380 -6.568 1.719 -0.920 C5 ZMO 27
ZMO C6 C6 C 0 1 N N N N N N 48.127 24.910 93.271 -8.032 1.617 -0.487 C6 ZMO 28
ZMO C7 C7 C 0 1 N N N N N N 47.270 24.672 92.032 -8.939 1.882 -1.690 C7 ZMO 29
ZMO C8 C8 C 0 1 N N N N N N 46.642 23.283 92.041 -10.403 1.780 -1.258 C8 ZMO 30
ZMO C9 C9 C 0 1 N N N N N N 45.908 23.015 90.733 -11.297 2.041 -2.443 C9 ZMO 31
ZMO C10 C10 C 0 1 N N N N N N 46.271 22.038 89.901 -12.236 1.184 -2.756 C10 ZMO 32
ZMO C11 C11 C 0 1 N N N N N N 47.447 21.106 90.184 -12.530 0.021 -1.843 C11 ZMO 33
ZMO C12 C12 C 0 1 N N N N N N 47.426 19.932 89.211 -14.025 -0.008 -1.518 C12 ZMO 34
ZMO C13 C13 C 0 1 N N N N N N 48.825 19.407 88.912 -14.323 -1.188 -0.592 C13 ZMO 35
ZMO C14 C14 C 0 1 N N N N N N 48.767 17.927 88.552 -15.817 -1.217 -0.267 C14 ZMO 36
ZMO C15 C15 C 0 1 N N N N N N 49.613 17.619 87.322 -16.115 -2.398 0.660 C15 ZMO 37
ZMO C16 C16 C 0 1 N N N N N N 49.528 16.152 86.959 -17.610 -2.427 0.984 C16 ZMO 38
ZMO H28 H28 H 0 1 N N N N N N 64.136 18.832 92.241 10.079 -0.937 0.315 H28 ZMO 39
ZMO H28A H28A H 0 0 N N N N N N 63.960 18.880 90.454 11.834 -0.681 0.466 H28A ZMO 40
ZMO H31 H31 H 0 1 N N N N N N 60.881 16.773 90.381 12.399 -0.051 -2.422 H31 ZMO 41
ZMO H31A H31A H 0 0 N N N N N N 62.093 17.627 89.368 12.060 1.696 -2.413 H31A ZMO 42
ZMO H31B H31B H 0 0 N N N N N N 62.556 16.136 90.256 12.994 0.964 -1.086 H31B ZMO 43
ZMO H30 H30 H 0 1 N N N N N N 60.453 18.907 91.595 8.789 0.273 -1.454 H30 ZMO 44
ZMO H30A H30A H 0 0 N N N N N N 61.822 19.795 92.347 9.629 1.381 -2.565 H30A ZMO 45
ZMO H30B H30B H 0 0 N N N N N N 61.678 19.714 90.558 9.891 -0.375 -2.692 H30B ZMO 46
ZMO H32 H32 H 0 1 N N N N N N 63.071 16.488 92.935 10.446 2.624 -0.612 H32 ZMO 47
ZMO HO33 HO33 H 0 0 N N N N N N 60.947 15.680 93.460 11.994 1.109 1.321 HO33 ZMO 48
ZMO HN36 HN36 H 0 0 N N N N N N 60.842 18.677 95.351 8.069 1.715 -0.653 HN36 ZMO 49
ZMO H37 H37 H 0 1 N N N N N N 59.323 17.476 93.260 7.035 0.305 1.565 H37 ZMO 50
ZMO H37A H37A H 0 0 N N N N N N 59.776 16.246 94.487 7.029 2.042 1.952 H37A ZMO 51
ZMO H38 H38 H 0 1 N N N N N N 57.827 17.121 95.451 5.719 2.495 -0.104 H38 ZMO 52
ZMO H38A H38A H 0 0 N N N N N N 59.079 18.171 96.199 5.726 0.758 -0.491 H38A ZMO 53
ZMO HN41 HN41 H 0 0 N N N N N N 56.177 18.375 94.915 3.179 1.609 -0.259 HN41 ZMO 54
ZMO H42 H42 H 0 1 N N N N N N 56.483 20.856 93.320 2.145 0.198 1.959 H42 ZMO 55
ZMO H42A H42A H 0 0 N N N N N N 55.002 19.854 93.490 2.138 1.936 2.346 H42A ZMO 56
ZMO H43 H43 H 0 1 N N N N N N 55.360 20.428 96.099 0.829 2.389 0.290 H43 ZMO 57
ZMO H43A H43A H 0 0 N N N N N N 56.220 21.851 95.419 0.835 0.652 -0.097 H43A ZMO 58
ZMO H2 H2 H 0 1 N N N N N N 52.802 23.692 91.810 -3.485 0.292 1.443 H2 ZMO 59
ZMO H2A H2A H 0 1 N N N N N N 52.046 22.128 92.270 -3.491 2.030 1.830 H2A ZMO 60
ZMO H3 H3 H 0 1 N N N N N N 51.303 22.985 94.368 -4.002 2.556 -0.539 H3 ZMO 61
ZMO H3A H3A H 0 1 N N N N N N 52.358 24.433 94.239 -3.995 0.819 -0.926 H3A ZMO 62
ZMO H4 H4 H 0 1 N N N N N N 50.620 25.541 93.356 -5.856 0.455 0.672 H4 ZMO 63
ZMO H4A H4A H 0 1 N N N N N N 50.723 24.461 91.924 -5.862 2.193 1.060 H4A ZMO 64
ZMO H5 H5 H 0 1 N N N N N N 49.038 23.048 92.696 -6.373 2.719 -1.309 H5 ZMO 65
ZMO H5A H5A H 0 1 N N N N N N 49.293 23.510 94.413 -6.366 0.982 -1.696 H5A ZMO 66
ZMO H6 H6 H 0 1 N N N N N N 47.490 24.839 94.165 -8.227 0.618 -0.098 H6 ZMO 67
ZMO H6A H6A H 0 1 N N N N N N 48.567 25.916 93.213 -8.233 2.355 0.289 H6A ZMO 68
ZMO H7 H7 H 0 1 N N N N N N 46.469 25.425 92.002 -8.744 2.882 -2.079 H7 ZMO 69
ZMO H7A H7A H 0 1 N N N N N N 47.901 24.772 91.137 -8.738 1.144 -2.467 H7A ZMO 70
ZMO H8 H8 H 0 1 N N N N N N 47.433 22.530 92.172 -10.598 0.781 -0.868 H8 ZMO 71
ZMO H8A H8A H 0 1 N N N N N N 45.929 23.215 92.876 -10.605 2.518 -0.481 H8A ZMO 72
ZMO H9 H9 H 0 1 N N N N N N 45.065 23.637 90.471 -11.162 2.935 -3.034 H9 ZMO 73
ZMO H10 H10 H 0 1 N N N N N N 45.710 21.900 88.989 -12.801 1.311 -3.668 H10 ZMO 74
ZMO H11 H11 H 0 1 N N N N N N 48.389 21.661 90.065 -12.247 -0.909 -2.337 H11 ZMO 75
ZMO H11A H11A H 0 0 N N N N N N 47.372 20.727 91.214 -11.959 0.130 -0.921 H11A ZMO 76
ZMO H12 H12 H 0 1 N N N N N N 46.829 19.119 89.650 -14.307 0.922 -1.024 H12 ZMO 77
ZMO H12A H12A H 0 0 N N N N N N 46.962 20.261 88.269 -14.595 -0.117 -2.441 H12A ZMO 78
ZMO H13 H13 H 0 1 N N N N N N 49.251 19.970 88.068 -14.040 -2.118 -1.086 H13 ZMO 79
ZMO H13A H13A H 0 0 N N N N N N 49.460 19.540 89.800 -13.752 -1.079 0.331 H13A ZMO 80
ZMO H14 H14 H 0 1 N N N N N N 49.143 17.337 89.401 -16.100 -0.287 0.227 H14 ZMO 81
ZMO H14A H14A H 0 0 N N N N N N 47.723 17.650 88.346 -16.388 -1.326 -1.189 H14A ZMO 82
ZMO H15 H15 H 0 1 N N N N N N 49.250 18.221 86.476 -15.833 -3.328 0.166 H15 ZMO 83
ZMO H15A H15A H 0 0 N N N N N N 50.661 17.877 87.532 -15.545 -2.289 1.582 H15A ZMO 84
ZMO H16A H16A H 0 0 N N N N N N 50.367 15.790 87.572 -17.892 -1.497 1.479 H16A ZMO 85
ZMO H16B H16B H 0 0 N N N N N N 48.578 15.920 87.463 -18.180 -2.536 0.062 H16B ZMO 86
ZMO C17 C17 C 0 1 N N N N N N 49.507 14.955 85.864 -17.908 -3.607 1.911 C17 ZMO 87
ZMO C18 C18 C 0 1 N N N N N N 50.610 14.873 84.792 -19.403 -3.636 2.236 C18 ZMO 88
ZMO H50 H50 H 0 1 N N N N N N 49.539 14.010 86.426 -17.625 -4.537 1.417 H50 ZMO 89
ZMO H51 H51 H 0 1 N N N N N N 48.549 15.031 85.329 -17.338 -3.498 2.833 H51 ZMO 90
ZMO H52 H52 H 0 1 N N N N N N 50.429 14.002 84.145 -19.685 -2.706 2.730 H52 ZMO 91
ZMO H53 H53 H 0 1 N N N N N N 50.599 15.790 84.184 -19.973 -3.745 1.313 H53 ZMO 92
ZMO H54 H54 H 0 1 N N N N N N 51.590 14.769 85.281 -19.615 -4.477 2.896 H54 ZMO 93
ZMO O28 O28 O 0 1 N Y N N N N ? ? ? 10.043 -3.883 -0.008 O28 ZMO 94
ZMO HO28 HO28 H 0 0 N Y N N N N ? ? ? 9.288 -3.861 -0.612 HO28 ZMO 95
ZMO HO23 HO23 H 0 0 N N N N N N 66.580 17.394 88.077 11.920 -5.214 -1.711 HO23 ZMO 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZMO O23 P24 SING N N 1
ZMO P24 O26 DOUB N N 2
ZMO P24 O27 SING N N 3
ZMO O27 C28 SING N N 4
ZMO C28 C29 SING N N 5
ZMO C28 H28 SING N N 6
ZMO C28 H28A SING N N 7
ZMO C29 C31 SING N N 8
ZMO C29 C30 SING N N 9
ZMO C29 C32 SING N N 10
ZMO C31 H31 SING N N 11
ZMO C31 H31A SING N N 12
ZMO C31 H31B SING N N 13
ZMO C30 H30 SING N N 14
ZMO C30 H30A SING N N 15
ZMO C30 H30B SING N N 16
ZMO C32 O33 SING N N 17
ZMO C32 C34 SING N N 18
ZMO C32 H32 SING N N 19
ZMO O33 HO33 SING N N 20
ZMO C34 O35 DOUB N N 21
ZMO C34 N36 SING N N 22
ZMO N36 C37 SING N N 23
ZMO N36 HN36 SING N N 24
ZMO C37 C38 SING N N 25
ZMO C37 H37 SING N N 26
ZMO C37 H37A SING N N 27
ZMO C38 C39 SING N N 28
ZMO C38 H38 SING N N 29
ZMO C38 H38A SING N N 30
ZMO C39 O40 DOUB N N 31
ZMO C39 N41 SING N N 32
ZMO N41 C42 SING N N 33
ZMO N41 HN41 SING N N 34
ZMO C42 C43 SING N N 35
ZMO C42 H42 SING N N 36
ZMO C42 H42A SING N N 37
ZMO C43 S1 SING N N 38
ZMO C43 H43 SING N N 39
ZMO C43 H43A SING N N 40
ZMO S1 C1 SING N N 41
ZMO C1 O1 DOUB N N 42
ZMO C1 C2 SING N N 43
ZMO C2 C3 SING N N 44
ZMO C2 H2 SING N N 45
ZMO C2 H2A SING N N 46
ZMO C3 C4 SING N N 47
ZMO C3 H3 SING N N 48
ZMO C3 H3A SING N N 49
ZMO C4 C5 SING N N 50
ZMO C4 H4 SING N N 51
ZMO C4 H4A SING N N 52
ZMO C5 C6 SING N N 53
ZMO C5 H5 SING N N 54
ZMO C5 H5A SING N N 55
ZMO C6 C7 SING N N 56
ZMO C6 H6 SING N N 57
ZMO C6 H6A SING N N 58
ZMO C7 C8 SING N N 59
ZMO C7 H7 SING N N 60
ZMO C7 H7A SING N N 61
ZMO C8 C9 SING N N 62
ZMO C8 H8 SING N N 63
ZMO C8 H8A SING N N 64
ZMO C9 C10 DOUB N Z 65
ZMO C9 H9 SING N N 66
ZMO C10 C11 SING N N 67
ZMO C10 H10 SING N N 68
ZMO C11 C12 SING N N 69
ZMO C11 H11 SING N N 70
ZMO C11 H11A SING N N 71
ZMO C12 C13 SING N N 72
ZMO C12 H12 SING N N 73
ZMO C12 H12A SING N N 74
ZMO C13 C14 SING N N 75
ZMO C13 H13 SING N N 76
ZMO C13 H13A SING N N 77
ZMO C14 C15 SING N N 78
ZMO C14 H14 SING N N 79
ZMO C14 H14A SING N N 80
ZMO C15 C16 SING N N 81
ZMO C15 H15 SING N N 82
ZMO C15 H15A SING N N 83
ZMO C16 H16A SING N N 84
ZMO C16 H16B SING N N 85
ZMO C16 C17 SING N N 86
ZMO C17 C18 SING N N 87
ZMO C17 H50 SING N N 88
ZMO C17 H51 SING N N 89
ZMO C18 H52 SING N N 90
ZMO C18 H53 SING N N 91
ZMO C18 H54 SING N N 92
ZMO P24 O28 SING N N 93
ZMO O28 HO28 SING N N 94
ZMO O23 HO23 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZMO SMILES ACDLabs 12.01 "OP(=O)(OCC(C)(C)C(O)C(=O)NCCC(=O)NCCSC(=O)CCCCCCC\C=C/CCCCCCCC)O"
ZMO InChI InChI 1.03 "InChI=1S/C29H55N2O8PS/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-26(33)41-23-22-30-25(32)20-21-31-28(35)27(34)29(2,3)24-39-40(36,37)38/h11-12,27,34H,4-10,13-24H2,1-3H3,(H,30,32)(H,31,35)(H2,36,37,38)/b12-11-/t27-/m1/s1"
ZMO InChIKey InChI 1.03 AINKKKUPSQZPIP-FRSJXWKWSA-N
ZMO SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC\C=C/CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O"
ZMO SMILES CACTVS 3.385 "CCCCCCCCC=CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
ZMO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCC/C=C\CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O"
ZMO SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCCC=CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZMO "SYSTEMATIC NAME" ACDLabs 12.01 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (9Z)-octadec-9-enethioate"
ZMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "S-[2-[3-[[(2S)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (Z)-octadec-9-enethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZMO "Create component" 2008-09-23 RCSB
ZMO "Modify descriptor" 2011-06-04 RCSB
ZMO "Other modification" 2017-02-28 RCSB
ZMO "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ZMO
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P24
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#