data_ZMP
#
_chem_comp.id ZMP
_chem_comp.name "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H49 N2 O8 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-09-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.704
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZMP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3EJB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZMP O7 O1 O 0 1 N N N N N N 67.970 17.328 88.329 -11.531 2.324 1.478 O7 ZMP 1
ZMP P1 P1 P 0 1 N N N N N N 68.114 17.610 89.972 -10.114 2.820 0.896 P1 ZMP 2
ZMP O6 O2 O 0 1 N N N N N N 69.438 18.469 90.520 -9.068 2.639 1.927 O6 ZMP 3
ZMP O5 O3 O 0 1 N N N N N N 66.570 17.761 90.944 -9.738 1.956 -0.409 O5 ZMP 4
ZMP C21 C1 C 0 1 N N N N N N 65.953 19.043 91.047 -9.475 0.552 -0.363 C21 ZMP 5
ZMP C18 C2 C 0 1 N N N N N N 64.494 18.892 91.460 -9.151 0.048 -1.771 C18 ZMP 6
ZMP C19 C3 C 0 1 N N N N N N 63.965 17.563 90.934 -10.341 0.315 -2.695 C19 ZMP 7
ZMP C20 C4 C 0 1 N N N N N N 63.689 20.030 90.852 -7.918 0.780 -2.304 C20 ZMP 8
ZMP C17 C5 C 0 1 N N S N N N 64.389 18.991 92.985 -8.870 -1.455 -1.722 C17 ZMP 9
ZMP O4 O4 O 0 1 N N N N N N 65.621 18.610 93.599 -10.061 -2.150 -1.345 O4 ZMP 10
ZMP C16 C6 C 0 1 N N N N N N 63.249 18.193 93.562 -7.786 -1.731 -0.713 C16 ZMP 11
ZMP O3 O5 O 0 1 N N N N N N 63.008 16.946 93.161 -8.065 -2.235 0.354 O3 ZMP 12
ZMP N2 N1 N 0 1 N N N N N N 62.532 18.728 94.453 -6.506 -1.419 -0.997 N2 ZMP 13
ZMP C15 C7 C 0 1 N N N N N N 61.389 18.169 95.163 -5.438 -1.785 -0.063 C15 ZMP 14
ZMP C14 C8 C 0 1 N N N N N N 60.198 18.302 94.218 -4.092 -1.318 -0.619 C14 ZMP 15
ZMP C13 C9 C 0 1 N N N N N N 59.791 19.749 94.038 -2.993 -1.695 0.341 C13 ZMP 16
ZMP O2 O6 O 0 1 N N N N N N 60.698 20.722 94.089 -3.261 -2.279 1.370 O2 ZMP 17
ZMP N1 N2 N 0 1 N N N N N N 58.581 20.037 93.829 -1.713 -1.382 0.058 N1 ZMP 18
ZMP C12 C10 C 0 1 N N N N N N 58.016 21.361 93.606 -0.646 -1.748 0.992 C12 ZMP 19
ZMP C11 C11 C 0 1 N N N N N N 57.292 21.748 94.890 0.701 -1.281 0.435 C11 ZMP 20
ZMP S1 S1 S 0 1 N N N N N N 55.819 22.653 94.517 2.020 -1.734 1.589 S1 ZMP 21
ZMP C10 C12 C 0 1 N N N N N N 55.995 23.611 93.042 3.376 -1.113 0.748 C10 ZMP 22
ZMP O1 O7 O 0 1 N N N N N N 57.194 23.774 92.495 3.226 -0.559 -0.321 O1 ZMP 23
ZMP C9 C13 C 0 1 N N N N N N 54.807 24.401 92.497 4.757 -1.255 1.336 C9 ZMP 24
ZMP C8 C14 C 0 1 N N N N N N 53.480 23.712 92.794 5.780 -0.621 0.392 C8 ZMP 25
ZMP C7 C15 C 0 1 N N N N N N 52.557 24.615 93.604 7.182 -0.765 0.989 C7 ZMP 26
ZMP C6 C16 C 0 1 N N N N N N 51.643 25.429 92.696 8.205 -0.130 0.045 C6 ZMP 27
ZMP C5 C17 C 0 1 N N N N N N 50.199 24.950 92.783 9.607 -0.274 0.642 C5 ZMP 28
ZMP C4 C18 C 0 1 N N N N N N 49.473 25.185 91.463 10.631 0.360 -0.302 C4 ZMP 29
ZMP C3 C19 C 0 1 N N N N N N 48.173 24.391 91.390 12.032 0.216 0.294 C3 ZMP 30
ZMP C2 C20 C 0 1 N N N N N N 48.441 22.893 91.292 13.056 0.850 -0.649 C2 ZMP 31
ZMP C1 C21 C 0 1 N N N N N N 48.913 22.276 89.980 14.457 0.706 -0.053 C1 ZMP 32
ZMP C22 C22 C 0 1 N N N N N N 49.850 21.073 90.004 15.481 1.341 -0.997 C22 ZMP 33
ZMP C23 C23 C 0 1 N N N N N N 50.160 20.570 88.599 16.882 1.197 -0.400 C23 ZMP 34
ZMP C24 C24 C 0 1 N N N N N N 51.297 19.555 88.628 17.906 1.831 -1.344 C24 ZMP 35
ZMP C25 C25 C 0 1 N N N N N N 51.203 18.580 87.460 19.308 1.687 -0.747 C25 ZMP 36
ZMP H1 H1 H 0 1 N N N N N N 68.708 17.717 87.875 -12.265 2.414 0.855 H1 ZMP 37
ZMP H3 H3 H 0 1 N N N N N N 66.484 19.643 91.801 -8.627 0.362 0.295 H3 ZMP 38
ZMP H4 H4 H 0 1 N N N N N N 66.004 19.550 90.072 -10.354 0.030 0.016 H4 ZMP 39
ZMP H5 H5 H 0 1 N N N N N N 64.545 16.738 91.372 -10.482 1.390 -2.804 H5 ZMP 40
ZMP H6 H6 H 0 1 N N N N N N 62.906 17.454 91.212 -10.149 -0.128 -3.672 H6 ZMP 41
ZMP H7 H7 H 0 1 N N N N N N 64.061 17.538 89.839 -11.241 -0.128 -2.266 H7 ZMP 42
ZMP H8 H8 H 0 1 N N N N N N 64.068 20.991 91.230 -7.105 0.695 -1.582 H8 ZMP 43
ZMP H9 H9 H 0 1 N N N N N N 63.786 20.003 89.757 -7.612 0.335 -3.250 H9 ZMP 44
ZMP H10 H10 H 0 1 N N N N N N 62.630 19.919 91.130 -8.158 1.832 -2.458 H10 ZMP 45
ZMP H11 H11 H 0 1 N N N N N N 64.199 20.048 93.224 -8.547 -1.797 -2.706 H11 ZMP 46
ZMP H12 H12 H 0 1 N N N N N N 65.539 18.677 94.543 -10.406 -1.896 -0.478 H12 ZMP 47
ZMP H13 H13 H 0 1 N N N N N N 62.783 19.662 94.706 -6.292 -0.951 -1.819 H13 ZMP 48
ZMP H14 H14 H 0 1 N N N N N N 61.204 18.730 96.091 -5.619 -1.308 0.900 H14 ZMP 49
ZMP H15 H15 H 0 1 N N N N N N 61.569 17.111 95.404 -5.423 -2.867 0.065 H15 ZMP 50
ZMP H16 H16 H 0 1 N N N N N N 59.348 17.741 94.633 -3.911 -1.795 -1.583 H16 ZMP 51
ZMP H17 H17 H 0 1 N N N N N N 60.471 17.883 93.238 -4.107 -0.236 -0.747 H17 ZMP 52
ZMP H18 H18 H 0 1 N N N N N N 57.938 19.271 93.815 -1.499 -0.915 -0.765 H18 ZMP 53
ZMP H19 H19 H 0 1 N N N N N N 58.817 22.084 93.389 -0.826 -1.271 1.955 H19 ZMP 54
ZMP H20 H20 H 0 1 N N N N N N 57.308 21.335 92.764 -0.630 -2.831 1.119 H20 ZMP 55
ZMP H21 H21 H 0 1 N N N N N N 57.027 20.836 95.446 0.881 -1.758 -0.528 H21 ZMP 56
ZMP H22 H22 H 0 1 N N N N N N 57.955 22.373 95.506 0.686 -0.199 0.307 H22 ZMP 57
ZMP H23 H23 H 0 1 N N N N N N 54.918 24.503 91.407 4.793 -0.752 2.303 H23 ZMP 58
ZMP H24 H24 H 0 1 N N N N N N 54.801 25.399 92.960 4.989 -2.312 1.467 H24 ZMP 59
ZMP H25 H25 H 0 1 N N N N N N 52.988 23.457 91.844 5.744 -1.123 -0.574 H25 ZMP 60
ZMP H26 H26 H 0 1 N N N N N N 53.674 22.792 93.365 5.548 0.436 0.261 H26 ZMP 61
ZMP H27 H27 H 0 1 N N N N N N 53.168 25.303 94.208 7.219 -0.262 1.955 H27 ZMP 62
ZMP H28 H28 H 0 1 N N N N N N 51.940 23.993 94.269 7.414 -1.821 1.120 H28 ZMP 63
ZMP H29 H29 H 0 1 N N N N N N 51.991 25.330 91.657 8.169 -0.633 -0.922 H29 ZMP 64
ZMP H30 H30 H 0 1 N N N N N N 51.688 26.486 92.998 7.973 0.926 -0.086 H30 ZMP 65
ZMP H31 H31 H 0 1 N N N N N N 49.683 25.502 93.582 9.644 0.228 1.608 H31 ZMP 66
ZMP H32 H32 H 0 1 N N N N N N 50.189 23.875 93.014 9.839 -1.331 0.773 H32 ZMP 67
ZMP H33 H33 H 0 1 N N N N N N 50.128 24.875 90.635 10.594 -0.143 -1.269 H33 ZMP 68
ZMP H34 H34 H 0 1 N N N N N N 49.243 26.256 91.368 10.398 1.417 -0.433 H34 ZMP 69
ZMP H35 H35 H 0 1 N N N N N N 47.607 24.712 90.503 12.069 0.719 1.261 H35 ZMP 70
ZMP H36 H36 H 0 1 N N N N N N 47.581 24.590 92.295 12.264 -0.841 0.426 H36 ZMP 71
ZMP H37 H37 H 0 1 N N N N N N 47.502 22.387 91.559 13.019 0.348 -1.616 H37 ZMP 72
ZMP H38 H38 H 0 1 N N N N N N 49.209 22.660 92.044 12.823 1.907 -0.780 H38 ZMP 73
ZMP H39 H39 H 0 1 N N N N N N 49.429 23.071 89.421 14.494 1.209 0.914 H39 ZMP 74
ZMP H40 H40 H 0 1 N N N N N N 48.012 21.967 89.430 14.690 -0.350 0.078 H40 ZMP 75
ZMP H41 H41 H 0 1 N N N N N N 49.374 20.262 90.576 15.444 0.838 -1.963 H41 ZMP 76
ZMP H42 H42 H 0 1 N N N N N N 50.791 21.364 90.494 15.248 2.397 -1.128 H42 ZMP 77
ZMP H43 H43 H 0 1 N N N N N N 50.452 21.422 87.967 16.919 1.700 0.567 H43 ZMP 78
ZMP H44 H44 H 0 1 N N N N N N 49.262 20.094 88.180 17.115 0.140 -0.269 H44 ZMP 79
ZMP H45 H45 H 0 1 N N N N N N 51.248 18.990 89.571 17.869 1.328 -2.310 H45 ZMP 80
ZMP H46 H46 H 0 1 N N N N N N 52.256 20.090 88.571 17.674 2.888 -1.475 H46 ZMP 81
ZMP H47 H47 H 0 1 N N N N N N 52.036 17.864 87.512 19.540 0.630 -0.616 H47 ZMP 82
ZMP H48 H48 H 0 1 N N N N N N 50.248 18.036 87.513 20.037 2.139 -1.419 H48 ZMP 83
ZMP H49 H49 H 0 1 N N N N N N 51.256 19.137 86.513 19.344 2.190 0.220 H49 ZMP 84
ZMP O8 O8 O 0 1 N Y N N N N 68.325 16.072 90.326 -10.213 4.377 0.499 O8 ZMP 85
ZMP H2 H2 H 0 1 N Y N N N N 69.156 15.961 90.773 -10.437 4.958 1.238 H2 ZMP 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZMP C25 C24 SING N N 1
ZMP O7 P1 SING N N 2
ZMP C23 C24 SING N N 3
ZMP C23 C22 SING N N 4
ZMP P1 O6 DOUB N N 5
ZMP P1 O5 SING N N 6
ZMP C1 C22 SING N N 7
ZMP C1 C2 SING N N 8
ZMP C20 C18 SING N N 9
ZMP C19 C18 SING N N 10
ZMP O5 C21 SING N N 11
ZMP C21 C18 SING N N 12
ZMP C2 C3 SING N N 13
ZMP C3 C4 SING N N 14
ZMP C18 C17 SING N N 15
ZMP C4 C5 SING N N 16
ZMP O1 C10 DOUB N N 17
ZMP C9 C8 SING N N 18
ZMP C9 C10 SING N N 19
ZMP C6 C5 SING N N 20
ZMP C6 C7 SING N N 21
ZMP C8 C7 SING N N 22
ZMP C17 C16 SING N N 23
ZMP C17 O4 SING N N 24
ZMP C10 S1 SING N N 25
ZMP O3 C16 DOUB N N 26
ZMP C16 N2 SING N N 27
ZMP C12 N1 SING N N 28
ZMP C12 C11 SING N N 29
ZMP N1 C13 SING N N 30
ZMP C13 O2 DOUB N N 31
ZMP C13 C14 SING N N 32
ZMP C14 C15 SING N N 33
ZMP N2 C15 SING N N 34
ZMP S1 C11 SING N N 35
ZMP O7 H1 SING N N 36
ZMP C21 H3 SING N N 37
ZMP C21 H4 SING N N 38
ZMP C19 H5 SING N N 39
ZMP C19 H6 SING N N 40
ZMP C19 H7 SING N N 41
ZMP C20 H8 SING N N 42
ZMP C20 H9 SING N N 43
ZMP C20 H10 SING N N 44
ZMP C17 H11 SING N N 45
ZMP O4 H12 SING N N 46
ZMP N2 H13 SING N N 47
ZMP C15 H14 SING N N 48
ZMP C15 H15 SING N N 49
ZMP C14 H16 SING N N 50
ZMP C14 H17 SING N N 51
ZMP N1 H18 SING N N 52
ZMP C12 H19 SING N N 53
ZMP C12 H20 SING N N 54
ZMP C11 H21 SING N N 55
ZMP C11 H22 SING N N 56
ZMP C9 H23 SING N N 57
ZMP C9 H24 SING N N 58
ZMP C8 H25 SING N N 59
ZMP C8 H26 SING N N 60
ZMP C7 H27 SING N N 61
ZMP C7 H28 SING N N 62
ZMP C6 H29 SING N N 63
ZMP C6 H30 SING N N 64
ZMP C5 H31 SING N N 65
ZMP C5 H32 SING N N 66
ZMP C4 H33 SING N N 67
ZMP C4 H34 SING N N 68
ZMP C3 H35 SING N N 69
ZMP C3 H36 SING N N 70
ZMP C2 H37 SING N N 71
ZMP C2 H38 SING N N 72
ZMP C1 H39 SING N N 73
ZMP C1 H40 SING N N 74
ZMP C22 H41 SING N N 75
ZMP C22 H42 SING N N 76
ZMP C23 H43 SING N N 77
ZMP C23 H44 SING N N 78
ZMP C24 H45 SING N N 79
ZMP C24 H46 SING N N 80
ZMP C25 H47 SING N N 81
ZMP C25 H48 SING N N 82
ZMP C25 H49 SING N N 83
ZMP P1 O8 SING N N 84
ZMP O8 H2 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZMP SMILES ACDLabs 12.01 "OP(=O)(OCC(C(C(NCCC(=O)NCCSC(=O)CCCCCCCCCCCCC)=O)O)(C)C)O"
ZMP InChI InChI 1.03 "InChI=1S/C25H49N2O8PS/c1-4-5-6-7-8-9-10-11-12-13-14-15-22(29)37-19-18-26-21(28)16-17-27-24(31)23(30)25(2,3)20-35-36(32,33)34/h23,30H,4-20H2,1-3H3,(H,26,28)(H,27,31)(H2,32,33,34)/t23-/m1/s1"
ZMP InChIKey InChI 1.03 HDTINWYIVVMRIN-HSZRJFAPSA-N
ZMP SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O"
ZMP SMILES CACTVS 3.385 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
ZMP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O"
ZMP SMILES "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZMP "SYSTEMATIC NAME" ACDLabs 12.01 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate"
ZMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] tetradecanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZMP "Create component" 2008-09-19 RCSB
ZMP "Modify descriptor" 2011-06-04 RCSB
ZMP "Other modification" 2016-08-16 RCSB
ZMP "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ZMP
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#