data_ZMP # _chem_comp.id ZMP _chem_comp.name "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H49 N2 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EJB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZMP O7 O1 O 0 1 N N N N N N 67.970 17.328 88.329 -11.531 2.324 1.478 O7 ZMP 1 ZMP P1 P1 P 0 1 N N N N N N 68.114 17.610 89.972 -10.114 2.820 0.896 P1 ZMP 2 ZMP O6 O2 O 0 1 N N N N N N 69.438 18.469 90.520 -9.068 2.639 1.927 O6 ZMP 3 ZMP O5 O3 O 0 1 N N N N N N 66.570 17.761 90.944 -9.738 1.956 -0.409 O5 ZMP 4 ZMP C21 C1 C 0 1 N N N N N N 65.953 19.043 91.047 -9.475 0.552 -0.363 C21 ZMP 5 ZMP C18 C2 C 0 1 N N N N N N 64.494 18.892 91.460 -9.151 0.048 -1.771 C18 ZMP 6 ZMP C19 C3 C 0 1 N N N N N N 63.965 17.563 90.934 -10.341 0.315 -2.695 C19 ZMP 7 ZMP C20 C4 C 0 1 N N N N N N 63.689 20.030 90.852 -7.918 0.780 -2.304 C20 ZMP 8 ZMP C17 C5 C 0 1 N N S N N N 64.389 18.991 92.985 -8.870 -1.455 -1.722 C17 ZMP 9 ZMP O4 O4 O 0 1 N N N N N N 65.621 18.610 93.599 -10.061 -2.150 -1.345 O4 ZMP 10 ZMP C16 C6 C 0 1 N N N N N N 63.249 18.193 93.562 -7.786 -1.731 -0.713 C16 ZMP 11 ZMP O3 O5 O 0 1 N N N N N N 63.008 16.946 93.161 -8.065 -2.235 0.354 O3 ZMP 12 ZMP N2 N1 N 0 1 N N N N N N 62.532 18.728 94.453 -6.506 -1.419 -0.997 N2 ZMP 13 ZMP C15 C7 C 0 1 N N N N N N 61.389 18.169 95.163 -5.438 -1.785 -0.063 C15 ZMP 14 ZMP C14 C8 C 0 1 N N N N N N 60.198 18.302 94.218 -4.092 -1.318 -0.619 C14 ZMP 15 ZMP C13 C9 C 0 1 N N N N N N 59.791 19.749 94.038 -2.993 -1.695 0.341 C13 ZMP 16 ZMP O2 O6 O 0 1 N N N N N N 60.698 20.722 94.089 -3.261 -2.279 1.370 O2 ZMP 17 ZMP N1 N2 N 0 1 N N N N N N 58.581 20.037 93.829 -1.713 -1.382 0.058 N1 ZMP 18 ZMP C12 C10 C 0 1 N N N N N N 58.016 21.361 93.606 -0.646 -1.748 0.992 C12 ZMP 19 ZMP C11 C11 C 0 1 N N N N N N 57.292 21.748 94.890 0.701 -1.281 0.435 C11 ZMP 20 ZMP S1 S1 S 0 1 N N N N N N 55.819 22.653 94.517 2.020 -1.734 1.589 S1 ZMP 21 ZMP C10 C12 C 0 1 N N N N N N 55.995 23.611 93.042 3.376 -1.113 0.748 C10 ZMP 22 ZMP O1 O7 O 0 1 N N N N N N 57.194 23.774 92.495 3.226 -0.559 -0.321 O1 ZMP 23 ZMP C9 C13 C 0 1 N N N N N N 54.807 24.401 92.497 4.757 -1.255 1.336 C9 ZMP 24 ZMP C8 C14 C 0 1 N N N N N N 53.480 23.712 92.794 5.780 -0.621 0.392 C8 ZMP 25 ZMP C7 C15 C 0 1 N N N N N N 52.557 24.615 93.604 7.182 -0.765 0.989 C7 ZMP 26 ZMP C6 C16 C 0 1 N N N N N N 51.643 25.429 92.696 8.205 -0.130 0.045 C6 ZMP 27 ZMP C5 C17 C 0 1 N N N N N N 50.199 24.950 92.783 9.607 -0.274 0.642 C5 ZMP 28 ZMP C4 C18 C 0 1 N N N N N N 49.473 25.185 91.463 10.631 0.360 -0.302 C4 ZMP 29 ZMP C3 C19 C 0 1 N N N N N N 48.173 24.391 91.390 12.032 0.216 0.294 C3 ZMP 30 ZMP C2 C20 C 0 1 N N N N N N 48.441 22.893 91.292 13.056 0.850 -0.649 C2 ZMP 31 ZMP C1 C21 C 0 1 N N N N N N 48.913 22.276 89.980 14.457 0.706 -0.053 C1 ZMP 32 ZMP C22 C22 C 0 1 N N N N N N 49.850 21.073 90.004 15.481 1.341 -0.997 C22 ZMP 33 ZMP C23 C23 C 0 1 N N N N N N 50.160 20.570 88.599 16.882 1.197 -0.400 C23 ZMP 34 ZMP C24 C24 C 0 1 N N N N N N 51.297 19.555 88.628 17.906 1.831 -1.344 C24 ZMP 35 ZMP C25 C25 C 0 1 N N N N N N 51.203 18.580 87.460 19.308 1.687 -0.747 C25 ZMP 36 ZMP H1 H1 H 0 1 N N N N N N 68.708 17.717 87.875 -12.265 2.414 0.855 H1 ZMP 37 ZMP H3 H3 H 0 1 N N N N N N 66.484 19.643 91.801 -8.627 0.362 0.295 H3 ZMP 38 ZMP H4 H4 H 0 1 N N N N N N 66.004 19.550 90.072 -10.354 0.030 0.016 H4 ZMP 39 ZMP H5 H5 H 0 1 N N N N N N 64.545 16.738 91.372 -10.482 1.390 -2.804 H5 ZMP 40 ZMP H6 H6 H 0 1 N N N N N N 62.906 17.454 91.212 -10.149 -0.128 -3.672 H6 ZMP 41 ZMP H7 H7 H 0 1 N N N N N N 64.061 17.538 89.839 -11.241 -0.128 -2.266 H7 ZMP 42 ZMP H8 H8 H 0 1 N N N N N N 64.068 20.991 91.230 -7.105 0.695 -1.582 H8 ZMP 43 ZMP H9 H9 H 0 1 N N N N N N 63.786 20.003 89.757 -7.612 0.335 -3.250 H9 ZMP 44 ZMP H10 H10 H 0 1 N N N N N N 62.630 19.919 91.130 -8.158 1.832 -2.458 H10 ZMP 45 ZMP H11 H11 H 0 1 N N N N N N 64.199 20.048 93.224 -8.547 -1.797 -2.706 H11 ZMP 46 ZMP H12 H12 H 0 1 N N N N N N 65.539 18.677 94.543 -10.406 -1.896 -0.478 H12 ZMP 47 ZMP H13 H13 H 0 1 N N N N N N 62.783 19.662 94.706 -6.292 -0.951 -1.819 H13 ZMP 48 ZMP H14 H14 H 0 1 N N N N N N 61.204 18.730 96.091 -5.619 -1.308 0.900 H14 ZMP 49 ZMP H15 H15 H 0 1 N N N N N N 61.569 17.111 95.404 -5.423 -2.867 0.065 H15 ZMP 50 ZMP H16 H16 H 0 1 N N N N N N 59.348 17.741 94.633 -3.911 -1.795 -1.583 H16 ZMP 51 ZMP H17 H17 H 0 1 N N N N N N 60.471 17.883 93.238 -4.107 -0.236 -0.747 H17 ZMP 52 ZMP H18 H18 H 0 1 N N N N N N 57.938 19.271 93.815 -1.499 -0.915 -0.765 H18 ZMP 53 ZMP H19 H19 H 0 1 N N N N N N 58.817 22.084 93.389 -0.826 -1.271 1.955 H19 ZMP 54 ZMP H20 H20 H 0 1 N N N N N N 57.308 21.335 92.764 -0.630 -2.831 1.119 H20 ZMP 55 ZMP H21 H21 H 0 1 N N N N N N 57.027 20.836 95.446 0.881 -1.758 -0.528 H21 ZMP 56 ZMP H22 H22 H 0 1 N N N N N N 57.955 22.373 95.506 0.686 -0.199 0.307 H22 ZMP 57 ZMP H23 H23 H 0 1 N N N N N N 54.918 24.503 91.407 4.793 -0.752 2.303 H23 ZMP 58 ZMP H24 H24 H 0 1 N N N N N N 54.801 25.399 92.960 4.989 -2.312 1.467 H24 ZMP 59 ZMP H25 H25 H 0 1 N N N N N N 52.988 23.457 91.844 5.744 -1.123 -0.574 H25 ZMP 60 ZMP H26 H26 H 0 1 N N N N N N 53.674 22.792 93.365 5.548 0.436 0.261 H26 ZMP 61 ZMP H27 H27 H 0 1 N N N N N N 53.168 25.303 94.208 7.219 -0.262 1.955 H27 ZMP 62 ZMP H28 H28 H 0 1 N N N N N N 51.940 23.993 94.269 7.414 -1.821 1.120 H28 ZMP 63 ZMP H29 H29 H 0 1 N N N N N N 51.991 25.330 91.657 8.169 -0.633 -0.922 H29 ZMP 64 ZMP H30 H30 H 0 1 N N N N N N 51.688 26.486 92.998 7.973 0.926 -0.086 H30 ZMP 65 ZMP H31 H31 H 0 1 N N N N N N 49.683 25.502 93.582 9.644 0.228 1.608 H31 ZMP 66 ZMP H32 H32 H 0 1 N N N N N N 50.189 23.875 93.014 9.839 -1.331 0.773 H32 ZMP 67 ZMP H33 H33 H 0 1 N N N N N N 50.128 24.875 90.635 10.594 -0.143 -1.269 H33 ZMP 68 ZMP H34 H34 H 0 1 N N N N N N 49.243 26.256 91.368 10.398 1.417 -0.433 H34 ZMP 69 ZMP H35 H35 H 0 1 N N N N N N 47.607 24.712 90.503 12.069 0.719 1.261 H35 ZMP 70 ZMP H36 H36 H 0 1 N N N N N N 47.581 24.590 92.295 12.264 -0.841 0.426 H36 ZMP 71 ZMP H37 H37 H 0 1 N N N N N N 47.502 22.387 91.559 13.019 0.348 -1.616 H37 ZMP 72 ZMP H38 H38 H 0 1 N N N N N N 49.209 22.660 92.044 12.823 1.907 -0.780 H38 ZMP 73 ZMP H39 H39 H 0 1 N N N N N N 49.429 23.071 89.421 14.494 1.209 0.914 H39 ZMP 74 ZMP H40 H40 H 0 1 N N N N N N 48.012 21.967 89.430 14.690 -0.350 0.078 H40 ZMP 75 ZMP H41 H41 H 0 1 N N N N N N 49.374 20.262 90.576 15.444 0.838 -1.963 H41 ZMP 76 ZMP H42 H42 H 0 1 N N N N N N 50.791 21.364 90.494 15.248 2.397 -1.128 H42 ZMP 77 ZMP H43 H43 H 0 1 N N N N N N 50.452 21.422 87.967 16.919 1.700 0.567 H43 ZMP 78 ZMP H44 H44 H 0 1 N N N N N N 49.262 20.094 88.180 17.115 0.140 -0.269 H44 ZMP 79 ZMP H45 H45 H 0 1 N N N N N N 51.248 18.990 89.571 17.869 1.328 -2.310 H45 ZMP 80 ZMP H46 H46 H 0 1 N N N N N N 52.256 20.090 88.571 17.674 2.888 -1.475 H46 ZMP 81 ZMP H47 H47 H 0 1 N N N N N N 52.036 17.864 87.512 19.540 0.630 -0.616 H47 ZMP 82 ZMP H48 H48 H 0 1 N N N N N N 50.248 18.036 87.513 20.037 2.139 -1.419 H48 ZMP 83 ZMP H49 H49 H 0 1 N N N N N N 51.256 19.137 86.513 19.344 2.190 0.220 H49 ZMP 84 ZMP O8 O8 O 0 1 N Y N N N N 68.325 16.072 90.326 -10.213 4.377 0.499 O8 ZMP 85 ZMP H2 H2 H 0 1 N Y N N N N 69.156 15.961 90.773 -10.437 4.958 1.238 H2 ZMP 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZMP C25 C24 SING N N 1 ZMP O7 P1 SING N N 2 ZMP C23 C24 SING N N 3 ZMP C23 C22 SING N N 4 ZMP P1 O6 DOUB N N 5 ZMP P1 O5 SING N N 6 ZMP C1 C22 SING N N 7 ZMP C1 C2 SING N N 8 ZMP C20 C18 SING N N 9 ZMP C19 C18 SING N N 10 ZMP O5 C21 SING N N 11 ZMP C21 C18 SING N N 12 ZMP C2 C3 SING N N 13 ZMP C3 C4 SING N N 14 ZMP C18 C17 SING N N 15 ZMP C4 C5 SING N N 16 ZMP O1 C10 DOUB N N 17 ZMP C9 C8 SING N N 18 ZMP C9 C10 SING N N 19 ZMP C6 C5 SING N N 20 ZMP C6 C7 SING N N 21 ZMP C8 C7 SING N N 22 ZMP C17 C16 SING N N 23 ZMP C17 O4 SING N N 24 ZMP C10 S1 SING N N 25 ZMP O3 C16 DOUB N N 26 ZMP C16 N2 SING N N 27 ZMP C12 N1 SING N N 28 ZMP C12 C11 SING N N 29 ZMP N1 C13 SING N N 30 ZMP C13 O2 DOUB N N 31 ZMP C13 C14 SING N N 32 ZMP C14 C15 SING N N 33 ZMP N2 C15 SING N N 34 ZMP S1 C11 SING N N 35 ZMP O7 H1 SING N N 36 ZMP C21 H3 SING N N 37 ZMP C21 H4 SING N N 38 ZMP C19 H5 SING N N 39 ZMP C19 H6 SING N N 40 ZMP C19 H7 SING N N 41 ZMP C20 H8 SING N N 42 ZMP C20 H9 SING N N 43 ZMP C20 H10 SING N N 44 ZMP C17 H11 SING N N 45 ZMP O4 H12 SING N N 46 ZMP N2 H13 SING N N 47 ZMP C15 H14 SING N N 48 ZMP C15 H15 SING N N 49 ZMP C14 H16 SING N N 50 ZMP C14 H17 SING N N 51 ZMP N1 H18 SING N N 52 ZMP C12 H19 SING N N 53 ZMP C12 H20 SING N N 54 ZMP C11 H21 SING N N 55 ZMP C11 H22 SING N N 56 ZMP C9 H23 SING N N 57 ZMP C9 H24 SING N N 58 ZMP C8 H25 SING N N 59 ZMP C8 H26 SING N N 60 ZMP C7 H27 SING N N 61 ZMP C7 H28 SING N N 62 ZMP C6 H29 SING N N 63 ZMP C6 H30 SING N N 64 ZMP C5 H31 SING N N 65 ZMP C5 H32 SING N N 66 ZMP C4 H33 SING N N 67 ZMP C4 H34 SING N N 68 ZMP C3 H35 SING N N 69 ZMP C3 H36 SING N N 70 ZMP C2 H37 SING N N 71 ZMP C2 H38 SING N N 72 ZMP C1 H39 SING N N 73 ZMP C1 H40 SING N N 74 ZMP C22 H41 SING N N 75 ZMP C22 H42 SING N N 76 ZMP C23 H43 SING N N 77 ZMP C23 H44 SING N N 78 ZMP C24 H45 SING N N 79 ZMP C24 H46 SING N N 80 ZMP C25 H47 SING N N 81 ZMP C25 H48 SING N N 82 ZMP C25 H49 SING N N 83 ZMP P1 O8 SING N N 84 ZMP O8 H2 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZMP SMILES ACDLabs 12.01 "OP(=O)(OCC(C(C(NCCC(=O)NCCSC(=O)CCCCCCCCCCCCC)=O)O)(C)C)O" ZMP InChI InChI 1.03 "InChI=1S/C25H49N2O8PS/c1-4-5-6-7-8-9-10-11-12-13-14-15-22(29)37-19-18-26-21(28)16-17-27-24(31)23(30)25(2,3)20-35-36(32,33)34/h23,30H,4-20H2,1-3H3,(H,26,28)(H,27,31)(H2,32,33,34)/t23-/m1/s1" ZMP InChIKey InChI 1.03 HDTINWYIVVMRIN-HSZRJFAPSA-N ZMP SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O" ZMP SMILES CACTVS 3.385 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O" ZMP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O" ZMP SMILES "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZMP "SYSTEMATIC NAME" ACDLabs 12.01 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate" ZMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] tetradecanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZMP "Create component" 2008-09-19 RCSB ZMP "Modify descriptor" 2011-06-04 RCSB ZMP "Other modification" 2016-08-16 RCSB ZMP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZMP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #