data_ZMR # _chem_comp.id ZMR _chem_comp.name ZANAMIVIR _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H20 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-GUANIDINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID; 4-guanidino-Neu5Ac2en; MODIFIED SIALIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZMR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1A4G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 ZMR "4-GUANIDINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID" PDB ? 2 ZMR 4-guanidino-Neu5Ac2en PDB ? 3 ZMR "MODIFIED SIALIC ACID" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZMR C1 C1 C 0 1 N N N 29.597 40.001 -30.935 0.340 3.484 0.311 C1 ZMR 1 ZMR O1A O1A O 0 1 N N N 29.676 40.436 -32.191 -0.554 4.304 0.241 O1A ZMR 2 ZMR O1B O1B O 0 1 N N N 28.974 40.549 -30.084 1.597 3.879 0.591 O1B ZMR 3 ZMR C2 C2 C 0 1 N N N 30.298 38.736 -30.639 0.047 2.056 0.095 C2 ZMR 4 ZMR C3 C3 C 0 1 N N N 30.246 38.233 -29.387 -1.200 1.699 -0.173 C3 ZMR 5 ZMR C4 C4 C 0 1 N N S 30.950 36.958 -29.043 -1.592 0.267 -0.416 C4 ZMR 6 ZMR C5 C5 C 0 1 N N R 31.924 36.549 -30.120 -0.494 -0.660 0.116 C5 ZMR 7 ZMR N5 N5 N 0 1 N N N 32.108 35.126 -29.905 -0.709 -2.019 -0.386 N5 ZMR 8 ZMR C10 C10 C 0 1 N N N 33.262 34.583 -29.577 -1.544 -2.854 0.263 C10 ZMR 9 ZMR O10 O10 O 0 1 N N N 34.263 35.235 -29.333 -2.119 -2.479 1.263 O10 ZMR 10 ZMR C11 C11 C 0 1 N N N 33.333 33.073 -29.685 -1.765 -4.252 -0.254 C11 ZMR 11 ZMR C6 C6 C 0 1 N N R 31.296 36.777 -31.481 0.860 -0.134 -0.377 C6 ZMR 12 ZMR O6 O6 O 0 1 N N N 30.950 38.128 -31.648 1.068 1.168 0.176 O6 ZMR 13 ZMR C7 C7 C 0 1 N N R 32.169 36.299 -32.649 1.977 -1.074 0.081 C7 ZMR 14 ZMR O7 O7 O 0 1 N N N 33.387 37.033 -32.733 1.913 -1.234 1.499 O7 ZMR 15 ZMR C8 C8 C 0 1 N N R 31.456 36.372 -33.996 3.333 -0.481 -0.305 C8 ZMR 16 ZMR O8 O8 O 0 1 N N N 30.283 35.586 -33.894 3.397 -0.322 -1.724 O8 ZMR 17 ZMR C9 C9 C 0 1 N N N 32.306 35.901 -35.194 4.450 -1.422 0.153 C9 ZMR 18 ZMR O9 O9 O 0 1 N N N 32.563 34.501 -35.161 5.719 -0.816 -0.103 O9 ZMR 19 ZMR NE NE N 0 1 N N N 31.619 36.856 -27.744 -2.851 -0.019 0.276 NE ZMR 20 ZMR CZ CZ C 0 1 N N N 31.361 35.902 -26.842 -4.050 0.274 -0.329 CZ ZMR 21 ZMR NH1 NH1 N 0 1 N N N 30.272 35.153 -26.966 -4.067 0.806 -1.519 NH1 ZMR 22 ZMR NH2 NH2 N 0 1 N N N 32.200 35.713 -25.818 -5.232 0.005 0.320 NH2 ZMR 23 ZMR H3 H3 H 0 1 N N N 29.689 38.757 -28.624 -1.962 2.463 -0.218 H3 ZMR 24 ZMR H4 H4 H 0 1 N N N 30.171 36.182 -29.043 -1.720 0.102 -1.486 H4 ZMR 25 ZMR H5 H5 H 0 1 N N N 32.870 37.103 -30.027 -0.513 -0.664 1.206 H5 ZMR 26 ZMR HN5 HN5 H 0 1 N N N 31.316 34.525 -30.012 -0.249 -2.319 -1.186 HN5 ZMR 27 ZMR H111 H111 H 0 0 N N N 34.368 32.741 -29.514 -1.169 -4.405 -1.154 H111 ZMR 28 ZMR H112 H112 H 0 0 N N N 32.673 32.620 -28.930 -1.465 -4.972 0.507 H112 ZMR 29 ZMR H113 H113 H 0 0 N N N 33.010 32.762 -30.689 -2.820 -4.390 -0.489 H113 ZMR 30 ZMR H6 H6 H 0 1 N N N 30.373 36.179 -31.511 0.856 -0.070 -1.465 H6 ZMR 31 ZMR H7 H7 H 0 1 N N N 32.410 35.242 -32.463 1.854 -2.045 -0.400 H7 ZMR 32 ZMR HO7 HO7 H 0 1 N N N 33.901 36.712 -33.465 2.015 -0.409 1.993 HO7 ZMR 33 ZMR H8 H8 H 0 1 N N N 31.178 37.421 -34.175 3.456 0.489 0.176 H8 ZMR 34 ZMR HO8 HO8 H 0 1 N N N 29.813 35.609 -34.719 3.296 -1.147 -2.218 HO8 ZMR 35 ZMR H91 H91 H 0 1 N N N 31.769 36.140 -36.124 4.348 -1.615 1.221 H91 ZMR 36 ZMR H92 H92 H 0 1 N N N 33.267 36.437 -35.178 4.380 -2.362 -0.394 H92 ZMR 37 ZMR HO9 HO9 H 0 1 N N N 33.087 34.257 -35.915 6.474 -1.357 0.163 HO9 ZMR 38 ZMR HNH1 HNH1 H 0 0 N N N 30.193 34.482 -26.228 -4.913 1.013 -1.946 HNH1 ZMR 39 ZMR HN21 HN21 H 0 0 N N N 32.009 35.004 -25.139 -5.219 -0.391 1.206 HN21 ZMR 40 ZMR HN22 HN22 H 0 0 N N N 33.018 36.281 -25.731 -6.078 0.212 -0.107 HN22 ZMR 41 ZMR HO1B HO1B H 0 0 N N N 28.558 41.323 -30.444 1.739 4.826 0.729 HO1B ZMR 42 ZMR HNE HNE H 0 1 N N N 32.311 37.541 -27.517 -2.839 -0.415 1.161 HNE ZMR 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZMR C1 O1A DOUB N N 1 ZMR C1 O1B SING N N 2 ZMR C1 C2 SING N N 3 ZMR C2 C3 DOUB N N 4 ZMR C2 O6 SING N N 5 ZMR C3 C4 SING N N 6 ZMR C3 H3 SING N N 7 ZMR C4 C5 SING N N 8 ZMR C4 NE SING N N 9 ZMR C4 H4 SING N N 10 ZMR C5 N5 SING N N 11 ZMR C5 C6 SING N N 12 ZMR C5 H5 SING N N 13 ZMR N5 C10 SING N N 14 ZMR N5 HN5 SING N N 15 ZMR C10 O10 DOUB N N 16 ZMR C10 C11 SING N N 17 ZMR C11 H111 SING N N 18 ZMR C11 H112 SING N N 19 ZMR C11 H113 SING N N 20 ZMR C6 O6 SING N N 21 ZMR C6 C7 SING N N 22 ZMR C6 H6 SING N N 23 ZMR C7 O7 SING N N 24 ZMR C7 C8 SING N N 25 ZMR C7 H7 SING N N 26 ZMR O7 HO7 SING N N 27 ZMR C8 O8 SING N N 28 ZMR C8 C9 SING N N 29 ZMR C8 H8 SING N N 30 ZMR O8 HO8 SING N N 31 ZMR C9 O9 SING N N 32 ZMR C9 H91 SING N N 33 ZMR C9 H92 SING N N 34 ZMR O9 HO9 SING N N 35 ZMR NE CZ SING N N 36 ZMR CZ NH1 DOUB N N 37 ZMR CZ NH2 SING N N 38 ZMR NH1 HNH1 SING N N 39 ZMR NH2 HN21 SING N N 40 ZMR NH2 HN22 SING N N 41 ZMR O1B HO1B SING N N 42 ZMR NE HNE SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZMR SMILES ACDLabs 12.01 "C(=O)(O)C1=CC(C(NC(=O)C)C(O1)C(O)C(O)CO)N\C(=N)N" ZMR InChI InChI 1.03 "InChI=1S/C12H20N4O7/c1-4(18)15-8-5(16-12(13)14)2-7(11(21)22)23-10(8)9(20)6(19)3-17/h2,5-6,8-10,17,19-20H,3H2,1H3,(H,15,18)(H,21,22)(H4,13,14,16)/t5-,6+,8+,9+,10+/m0/s1" ZMR InChIKey InChI 1.03 ARAIBEBZBOPLMB-UFGQHTETSA-N ZMR SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](NC(N)=N)C=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O" ZMR SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](NC(N)=N)C=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O" ZMR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)O)C(=O)O" ZMR SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C=C(OC1C(C(CO)O)O)C(=O)O)NC(=N)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZMR "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-D-glycero-D-galacto-non-2-enonic acid" ZMR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;(2~{R},3~{R},4~{S})-3-acetamido-4-carbamimidamido-2-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-3,4-dihydro-2~{H}-pyran- 6-carboxylic acid ; # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ZMR "CARBOHYDRATE ISOMER" D PDB ? ZMR "CARBOHYDRATE RING" dihydropyran PDB ? ZMR "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZMR "Create component" 1999-07-08 RCSB ZMR "Modify descriptor" 2011-06-04 RCSB ZMR "Other modification" 2020-04-10 RCSB ZMR "Other modification" 2020-07-03 RCSB ZMR "Modify synonyms" 2020-07-17 RCSB ZMR "Modify component atom id" 2020-07-17 RCSB ##