data_ZNB # _chem_comp.id ZNB _chem_comp.name "2-[6-azanyl-9-[(2R,3R,4S,5R)-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[[(2R,3S,4R,5R)-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]ethanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H25 Br N14 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-06 _chem_comp.pdbx_modified_date 2024-05-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 709.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZNB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZNB N53 N53 N -1 1 N N N N N N 15.068 5.644 11.321 -5.577 -5.648 3.031 N53 ZNB 1 ZNB N52 N52 N 1 1 N N N N N N 15.974 6.304 11.950 -5.277 -4.665 2.577 N52 ZNB 2 ZNB N51 N51 N 0 1 N N N N N N 16.866 6.997 12.529 -4.976 -3.681 2.123 N51 ZNB 3 ZNB C5 C5 C 0 1 N N N N N N 17.460 6.610 13.808 -5.201 -3.435 0.696 C5 ZNB 4 ZNB C4 C4 C 0 1 N N R N N N 18.613 7.523 14.092 -6.123 -2.226 0.526 C4 ZNB 5 ZNB O4 O4 O 0 1 N N N N N N 18.307 8.649 13.363 -5.440 -1.014 0.913 O4 ZNB 6 ZNB C2 C2 C 0 1 N N S N N N 18.498 7.973 15.535 -6.475 -2.023 -0.964 C2 ZNB 7 ZNB O2 O2 O 0 1 N N N N N N 19.677 7.569 16.188 -7.755 -2.585 -1.258 O2 ZNB 8 ZNB C3 C3 C 0 1 N N R N N N 18.506 9.488 15.482 -6.504 -0.488 -1.137 C3 ZNB 9 ZNB O3 O3 O 0 1 N N N N N N 19.536 9.918 16.349 -7.804 -0.055 -1.543 O3 ZNB 10 ZNB C1 C1 C 0 1 N N R N N N 18.979 9.667 14.071 -6.167 0.055 0.269 C1 ZNB 11 ZNB N9A N9A N 0 1 Y N N N N N 19.005 10.967 13.377 -5.330 1.253 0.167 N9A ZNB 12 ZNB C4A C4A C 0 1 Y N N N N N 20.176 11.386 12.967 -5.721 2.545 0.429 C4A ZNB 13 ZNB N3A N3A N 0 1 Y N N N N N 21.391 10.854 13.080 -6.854 3.118 0.822 N3A ZNB 14 ZNB C2A C2A C 0 1 Y N N N N N 22.423 11.473 12.584 -6.923 4.422 0.993 C2A ZNB 15 ZNB N1A N1A N 0 1 Y N N N N N 22.302 12.618 11.965 -5.890 5.218 0.789 N1A ZNB 16 ZNB C6A C6A C 0 1 Y N N N N N 21.130 13.218 11.829 -4.716 4.735 0.394 C6A ZNB 17 ZNB N6A N6A N 0 1 N N N N N N 21.066 14.358 11.205 -3.638 5.579 0.182 N6A ZNB 18 ZNB C5A C5A C 0 1 Y N N N N N 19.999 12.589 12.343 -4.594 3.350 0.198 C5A ZNB 19 ZNB N7A N7A N 0 1 Y N N N N N 18.719 12.860 12.387 -3.585 2.529 -0.187 N7A ZNB 20 ZNB C8A C8A C 0 1 Y N N N N N 18.102 11.871 12.987 -4.013 1.291 -0.202 C8A ZNB 21 ZNB S81 S81 S 0 1 N N N N N N 16.358 12.005 13.223 -3.041 -0.112 -0.641 S81 ZNB 22 ZNB C82 C82 C 0 1 N N N N N N 15.638 10.489 13.945 -1.465 0.699 -1.007 C82 ZNB 23 ZNB C83 C83 C 0 1 N N N N N N 14.531 9.999 13.010 -0.451 -0.338 -1.417 C83 ZNB 24 ZNB O83 O83 O 0 1 N N N N N N 13.461 9.557 13.387 -0.762 -1.509 -1.458 O83 ZNB 25 ZNB "N5'" "N5'" N 0 1 N N N N N N 14.891 10.219 11.776 0.803 0.038 -1.739 "N5'" ZNB 26 ZNB "C5'" "C5'" C 0 1 N N N N N N 14.286 9.872 10.511 1.790 -0.970 -2.137 "C5'" ZNB 27 ZNB "C4'" "C4'" C 0 1 N N R N N N 15.598 9.718 9.726 3.122 -0.284 -2.447 "C4'" ZNB 28 ZNB "O4'" "O4'" O 0 1 N N N N N N 16.035 8.387 9.721 3.674 0.277 -1.244 "O4'" ZNB 29 ZNB "C3'" "C3'" C 0 1 N N S N N N 15.518 10.070 8.271 4.132 -1.319 -2.980 "C3'" ZNB 30 ZNB "O3'" "O3'" O 0 1 N N N N N N 15.420 11.484 8.135 4.558 -0.969 -4.298 "O3'" ZNB 31 ZNB "C2'" "C2'" C 0 1 N N R N N N 16.868 9.506 7.846 5.317 -1.239 -1.986 "C2'" ZNB 32 ZNB "O2'" "O2'" O 0 1 N N N N N N 17.888 10.408 8.138 6.566 -1.307 -2.675 "O2'" ZNB 33 ZNB "C1'" "C1'" C 0 1 N N R N N N 17.067 8.316 8.761 5.110 0.162 -1.346 "C1'" ZNB 34 ZNB N9N N9N N 0 1 Y N N N N N 17.059 6.999 8.065 5.729 0.219 -0.020 N9N ZNB 35 ZNB C8N C8N C 0 1 Y N N N N N 16.133 6.450 7.279 5.251 -0.358 1.120 C8N ZNB 36 ZNB BR8 BR8 BR 0 0 N N N N N N 14.461 7.142 6.690 3.657 -1.368 1.238 BR8 ZNB 37 ZNB N7N N7N N 0 1 Y N N N N N 16.528 5.263 6.882 6.055 -0.111 2.115 N7N ZNB 38 ZNB C5N C5N C 0 1 Y N N N N N 17.708 5.033 7.409 7.096 0.638 1.677 C5N ZNB 39 ZNB C4N C4N C 0 1 Y N N N N N 18.042 6.134 8.159 6.900 0.859 0.303 C4N ZNB 40 ZNB N3N N3N N 0 1 Y N N N N N 19.199 6.163 8.798 7.795 1.573 -0.371 N3N ZNB 41 ZNB C2N C2N C 0 1 Y N N N N N 19.997 5.141 8.705 8.851 2.072 0.238 C2N ZNB 42 ZNB N1N N1N N 0 1 Y N N N N N 19.719 4.074 7.997 9.076 1.895 1.527 N1N ZNB 43 ZNB C6N C6N C 0 1 Y N N N N N 18.597 3.973 7.331 8.238 1.190 2.281 C6N ZNB 44 ZNB N6N N6N N 0 1 N N N N N N 18.348 2.892 6.636 8.485 1.007 3.631 N6N ZNB 45 ZNB H2 H2 H 0 1 N N N N N N 16.710 6.700 14.608 -4.247 -3.236 0.207 H2 ZNB 46 ZNB H3 H3 H 0 1 N N N N N N 17.815 5.570 13.753 -5.664 -4.312 0.244 H3 ZNB 47 ZNB H4 H4 H 0 1 N N N N N N 19.588 7.068 13.865 -7.031 -2.356 1.116 H4 ZNB 48 ZNB H5 H5 H 0 1 N N N N N N 17.582 7.588 16.008 -5.709 -2.466 -1.601 H5 ZNB 49 ZNB H6 H6 H 0 1 N N N N N N 19.642 7.835 17.099 -7.810 -3.539 -1.108 H6 ZNB 50 ZNB H7 H7 H 0 1 N N N N N N 17.519 9.934 15.674 -5.754 -0.170 -1.861 H7 ZNB 51 ZNB H8 H8 H 0 1 N N N N N N 19.256 9.813 17.251 -8.092 -0.415 -2.393 H8 ZNB 52 ZNB H9 H9 H 0 1 N N N N N N 20.032 9.350 14.098 -7.082 0.276 0.820 H9 ZNB 53 ZNB H10 H10 H 0 1 N N N N N N 23.403 11.030 12.686 -7.859 4.855 1.313 H10 ZNB 54 ZNB H11 H11 H 0 1 N N N N N N 21.981 14.624 10.902 -3.735 6.534 0.320 H11 ZNB 55 ZNB H12 H12 H 0 1 N N N N N N 20.464 14.270 10.411 -2.786 5.215 -0.106 H12 ZNB 56 ZNB H13 H13 H 0 1 N N N N N N 15.217 10.711 14.937 -1.604 1.413 -1.819 H13 ZNB 57 ZNB H14 H14 H 0 1 N N N N N N 16.415 9.716 14.041 -1.111 1.222 -0.119 H14 ZNB 58 ZNB H15 H15 H 0 1 N N N N N N 15.750 10.724 11.689 1.053 0.975 -1.706 H15 ZNB 59 ZNB H16 H16 H 0 1 N N N N N N 13.647 10.675 10.114 1.929 -1.684 -1.326 H16 ZNB 60 ZNB H17 H17 H 0 1 N N N N N N 13.710 8.936 10.560 1.436 -1.493 -3.025 H17 ZNB 61 ZNB H18 H18 H 0 1 N N N N N N 16.356 10.359 10.200 2.971 0.502 -3.187 H18 ZNB 62 ZNB H19 H19 H 0 1 N N N N N N 14.693 9.539 7.774 3.695 -2.317 -2.974 H19 ZNB 63 ZNB H20 H20 H 0 1 N N N N N N 14.559 11.771 8.415 5.195 -1.586 -4.683 H20 ZNB 64 ZNB H21 H21 H 0 1 N N N N N N 16.853 9.198 6.790 5.246 -2.025 -1.234 H21 ZNB 65 ZNB H22 H22 H 0 1 N N N N N N 18.722 10.042 7.867 6.701 -2.129 -3.166 H22 ZNB 66 ZNB H23 H23 H 0 1 N N N N N N 18.039 8.434 9.263 5.512 0.942 -1.992 H23 ZNB 67 ZNB H24 H24 H 0 1 N N N N N N 20.936 5.173 9.238 9.560 2.647 -0.340 H24 ZNB 68 ZNB H25 H25 H 0 1 N N N N N N 19.113 2.254 6.725 7.865 0.492 4.171 H25 ZNB 69 ZNB H26 H26 H 0 1 N N N N N N 17.513 2.461 6.978 9.277 1.393 4.036 H26 ZNB 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZNB N6N C6N SING N N 1 ZNB BR8 C8N SING N N 2 ZNB N7N C8N DOUB Y N 3 ZNB N7N C5N SING Y N 4 ZNB C8N N9N SING Y N 5 ZNB C6N C5N DOUB Y N 6 ZNB C6N N1N SING Y N 7 ZNB C5N C4N SING Y N 8 ZNB "C2'" "O2'" SING N N 9 ZNB "C2'" "C3'" SING N N 10 ZNB "C2'" "C1'" SING N N 11 ZNB N1N C2N DOUB Y N 12 ZNB N9N C4N SING Y N 13 ZNB N9N "C1'" SING N N 14 ZNB "O3'" "C3'" SING N N 15 ZNB C4N N3N DOUB Y N 16 ZNB "C3'" "C4'" SING N N 17 ZNB C2N N3N SING Y N 18 ZNB "C1'" "O4'" SING N N 19 ZNB "O4'" "C4'" SING N N 20 ZNB "C4'" "C5'" SING N N 21 ZNB "C5'" "N5'" SING N N 22 ZNB N6A C6A SING N N 23 ZNB N53 N52 DOUB N N 24 ZNB "N5'" C83 SING N N 25 ZNB C6A N1A DOUB Y N 26 ZNB C6A C5A SING Y N 27 ZNB N52 N51 DOUB N N 28 ZNB N1A C2A SING Y N 29 ZNB C5A N7A SING Y N 30 ZNB C5A C4A DOUB Y N 31 ZNB N7A C8A DOUB Y N 32 ZNB N51 C5 SING N N 33 ZNB C2A N3A DOUB Y N 34 ZNB C4A N3A SING Y N 35 ZNB C4A N9A SING Y N 36 ZNB C8A S81 SING N N 37 ZNB C8A N9A SING Y N 38 ZNB C83 O83 DOUB N N 39 ZNB C83 C82 SING N N 40 ZNB S81 C82 SING N N 41 ZNB O4 C1 SING N N 42 ZNB O4 C4 SING N N 43 ZNB N9A C1 SING N N 44 ZNB C5 C4 SING N N 45 ZNB C1 C3 SING N N 46 ZNB C4 C2 SING N N 47 ZNB C3 C2 SING N N 48 ZNB C3 O3 SING N N 49 ZNB C2 O2 SING N N 50 ZNB C5 H2 SING N N 51 ZNB C5 H3 SING N N 52 ZNB C4 H4 SING N N 53 ZNB C2 H5 SING N N 54 ZNB O2 H6 SING N N 55 ZNB C3 H7 SING N N 56 ZNB O3 H8 SING N N 57 ZNB C1 H9 SING N N 58 ZNB C2A H10 SING N N 59 ZNB N6A H11 SING N N 60 ZNB N6A H12 SING N N 61 ZNB C82 H13 SING N N 62 ZNB C82 H14 SING N N 63 ZNB "N5'" H15 SING N N 64 ZNB "C5'" H16 SING N N 65 ZNB "C5'" H17 SING N N 66 ZNB "C4'" H18 SING N N 67 ZNB "C3'" H19 SING N N 68 ZNB "O3'" H20 SING N N 69 ZNB "C2'" H21 SING N N 70 ZNB "O2'" H22 SING N N 71 ZNB "C1'" H23 SING N N 72 ZNB C2N H24 SING N N 73 ZNB N6N H25 SING N N 74 ZNB N6N H26 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZNB SMILES ACDLabs 12.01 "OC1C(O)C(C\N=[N+]=[N-])OC1n1c2ncnc(N)c2nc1SCC(=O)NCC1OC(n2c(Br)nc3c(N)ncnc32)C(O)C1O" ZNB InChI InChI 1.06 "InChI=1S/C22H25BrN14O7S/c23-21-33-9-15(24)28-4-30-17(9)36(21)19-13(41)11(39)6(43-19)1-27-8(38)3-45-22-34-10-16(25)29-5-31-18(10)37(22)20-14(42)12(40)7(44-20)2-32-35-26/h4-7,11-14,19-20,39-42H,1-3H2,(H,27,38)(H2,24,28,30)(H2,25,29,31)/t6-,7-,11-,12-,13-,14-,19-,20-/m1/s1" ZNB InChIKey InChI 1.06 WFFKQQMGOXMIGR-ZOUOOXKVSA-N ZNB SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@@H]3O[C@H](CNC(=O)CSc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O)c(Br)nc12" ZNB SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3O[CH](CNC(=O)CSc4nc5c(N)ncnc5n4[CH]6O[CH](CN=[N+]=[N-])[CH](O)[CH]6O)[CH](O)[CH]3O)c(Br)nc12" ZNB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)SCC(=O)NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4c5c(c(ncn5)N)nc4Br)O)O)[C@H]6[C@@H]([C@@H]([C@H](O6)CN=[N+]=[N-])O)O)N" ZNB SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)SCC(=O)NCC3C(C(C(O3)n4c5c(c(ncn5)N)nc4Br)O)O)C6C(C(C(O6)CN=[N+]=[N-])O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZNB "SYSTEMATIC NAME" ACDLabs 12.01 "2-({6-amino-9-[(2R,3R,4S,5R)-5-(azidomethyl)-3,4-dihydroxyoxolan-2-yl]-9H-purin-8-yl}sulfanyl)-N-{[(2R,3S,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}acetamide (non-preferred name)" ZNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZNB "Create component" 2012-01-06 RCSB ZNB "Other modification" 2024-05-08 RCSB #