data_ZNH # _chem_comp.id ZNH _chem_comp.name "PROTOPORPHYRIN IX CONTAINING ZN" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H32 N4 O4 Zn" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-03-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 626.051 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZNH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1I55 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZNH ZN ZN ZN 0 0 N N N N N N 29.326 23.341 0.257 ? ? ? ZN ZNH 1 ZNH CHA CHA C 0 1 N N N N N N 30.752 23.453 -2.839 ? ? ? CHA ZNH 2 ZNH CHB CHB C 0 1 N N N N N N 31.210 20.621 1.047 ? ? ? CHB ZNH 3 ZNH CHC CHC C 0 1 N N N N N N 28.129 23.454 3.476 ? ? ? CHC ZNH 4 ZNH CHD CHD C 0 1 N N N N N N 27.272 25.940 -0.590 ? ? ? CHD ZNH 5 ZNH NA "N A" N 0 1 N N R N N N 30.741 22.246 -0.735 ? ? ? NA ZNH 6 ZNH C1A C1A C 0 1 N N N N N N 31.245 22.459 -1.987 ? ? ? C1A ZNH 7 ZNH C2A C2A C 0 1 N N N N N N 32.274 21.494 -2.292 ? ? ? C2A ZNH 8 ZNH C3A C3A C 0 1 N N N N N N 32.362 20.679 -1.205 ? ? ? C3A ZNH 9 ZNH C4A C4A C 0 1 N N N N N N 31.400 21.158 -0.233 ? ? ? C4A ZNH 10 ZNH CMA CMA C 0 1 N N N N N N 33.291 19.483 -1.045 ? ? ? CMA ZNH 11 ZNH CAA CAA C 0 1 N N N N N N 33.094 21.400 -3.581 ? ? ? CAA ZNH 12 ZNH CBA CBA C 0 1 N N N N N N 32.330 20.512 -4.554 ? ? ? CBA ZNH 13 ZNH CGA CGA C 0 1 N N N N N N 33.087 20.229 -5.839 ? ? ? CGA ZNH 14 ZNH O1A O1A O 0 1 N N N N N N 32.575 19.442 -6.659 ? ? ? O1A ZNH 15 ZNH O2A O2A O 0 1 N N N N N N 34.190 20.781 -6.035 ? ? ? O2A ZNH 16 ZNH NB "N B" N 0 1 N N N N N N 29.628 22.254 1.947 ? ? ? NB ZNH 17 ZNH C1B C1B C 0 1 N N N N N N 30.381 21.109 2.053 ? ? ? C1B ZNH 18 ZNH C2B C2B C 0 1 N N N N N N 30.240 20.515 3.367 ? ? ? C2B ZNH 19 ZNH C3B C3B C 0 1 N N N N N N 29.425 21.349 4.086 ? ? ? C3B ZNH 20 ZNH C4B C4B C 0 1 N N N N N N 29.034 22.426 3.174 ? ? ? C4B ZNH 21 ZNH CMB CMB C 0 1 N N N N N N 30.816 19.160 3.775 ? ? ? CMB ZNH 22 ZNH CAB CAB C 0 1 N N N N N N 29.099 21.265 5.428 ? ? ? CAB ZNH 23 ZNH CBB CBB C 0 1 N N N N N N 30.084 21.394 6.395 ? ? ? CBB ZNH 24 ZNH NC "N C" N 0 1 Y N N N N N 28.004 24.549 1.271 ? ? ? NC ZNH 25 ZNH C1C C1C C 0 1 Y N N N N N 27.651 24.439 2.596 ? ? ? C1C ZNH 26 ZNH C2C C2C C 0 1 Y N N N N N 26.620 25.395 2.926 ? ? ? C2C ZNH 27 ZNH C3C C3C C 0 1 Y N N N N N 26.325 26.070 1.770 ? ? ? C3C ZNH 28 ZNH C4C C4C C 0 1 Y N N N N N 27.208 25.535 0.746 ? ? ? C4C ZNH 29 ZNH CMC CMC C 0 1 N N N N N N 26.035 25.566 4.323 ? ? ? CMC ZNH 30 ZNH CAC CAC C 0 1 N N N N N N 25.344 27.048 1.555 ? ? ? CAC ZNH 31 ZNH CBC CBC C 0 1 N N N N N N 25.207 28.203 2.309 ? ? ? CBC ZNH 32 ZNH ND "N D" N 0 1 N N N N N N 29.023 24.459 -1.447 ? ? ? ND ZNH 33 ZNH C1D C1D C 0 1 N N N N N N 28.110 25.461 -1.617 ? ? ? C1D ZNH 34 ZNH C2D C2D C 0 1 N N N N N N 28.222 26.013 -2.928 ? ? ? C2D ZNH 35 ZNH C3D C3D C 0 1 N N N N N N 29.243 25.340 -3.544 ? ? ? C3D ZNH 36 ZNH C4D C4D C 0 1 N N N N N N 29.727 24.372 -2.614 ? ? ? C4D ZNH 37 ZNH CMD CMD C 0 1 N N N N N N 27.353 27.131 -3.494 ? ? ? CMD ZNH 38 ZNH CAD CAD C 0 1 N N N N N N 29.834 25.630 -4.915 ? ? ? CAD ZNH 39 ZNH CBD CBD C 0 1 N N N N N N 30.962 26.634 -4.701 ? ? ? CBD ZNH 40 ZNH CGD CGD C 0 1 N N N N N N 31.512 27.233 -5.987 ? ? ? CGD ZNH 41 ZNH O1D O1D O 0 1 N N N N N N 31.086 26.836 -7.093 ? ? ? O1D ZNH 42 ZNH O2D O2D O 0 1 N N N N N N 32.384 28.119 -5.879 ? ? ? O2D ZNH 43 ZNH HHA HHA H 0 1 N N N N N N 31.231 23.518 -3.805 ? ? ? HHA ZNH 44 ZNH HHB HHB H 0 1 N N N N N N 31.770 19.727 1.279 ? ? ? HHB ZNH 45 ZNH HHC HHC H 0 1 N N N N N N 27.761 23.492 4.491 ? ? ? HHC ZNH 46 ZNH HHD HHD H 0 1 N N N N N N 26.587 26.726 -0.874 ? ? ? HHD ZNH 47 ZNH HMA1 HMA1 H 0 0 N N N N N N 33.132 19.024 -0.058 ? ? ? HMA1 ZNH 48 ZNH HMA2 HMA2 H 0 0 N N N N N N 33.077 18.745 -1.832 ? ? ? HMA2 ZNH 49 ZNH HMA3 HMA3 H 0 0 N N N N N N 34.336 19.816 -1.130 ? ? ? HMA3 ZNH 50 ZNH HAA1 HAA1 H 0 0 N N N N N N 33.227 22.402 -4.014 ? ? ? HAA1 ZNH 51 ZNH HAA2 HAA2 H 0 0 N N N N N N 34.079 20.960 -3.367 ? ? ? HAA2 ZNH 52 ZNH HBA1 HBA1 H 0 0 N N N N N N 32.117 19.554 -4.057 ? ? ? HBA1 ZNH 53 ZNH HBA2 HBA2 H 0 0 N N N N N N 31.383 21.010 -4.810 ? ? ? HBA2 ZNH 54 ZNH H2A H2A H 0 1 N N N N N N 34.539 20.503 -6.874 ? ? ? H2A ZNH 55 ZNH HMB1 HMB1 H 0 0 N N N N N N 30.561 18.954 4.825 ? ? ? HMB1 ZNH 56 ZNH HMB2 HMB2 H 0 0 N N N N N N 30.392 18.373 3.134 ? ? ? HMB2 ZNH 57 ZNH HMB3 HMB3 H 0 0 N N N N N N 31.910 19.177 3.660 ? ? ? HMB3 ZNH 58 ZNH HAB HAB H 0 1 N N N N N N 28.074 21.098 5.723 ? ? ? HAB ZNH 59 ZNH HBB1 HBB1 H 0 0 N N N N N N 29.825 21.328 7.441 ? ? ? HBB1 ZNH 60 ZNH HBB2 HBB2 H 0 0 N N N N N N 31.110 21.561 6.102 ? ? ? HBB2 ZNH 61 ZNH HMC1 HMC1 H 0 0 N N N N N N 26.623 26.311 4.879 ? ? ? HMC1 ZNH 62 ZNH HMC2 HMC2 H 0 0 N N N N N N 24.992 25.907 4.244 ? ? ? HMC2 ZNH 63 ZNH HMC3 HMC3 H 0 0 N N N N N N 26.067 24.603 4.854 ? ? ? HMC3 ZNH 64 ZNH HAC HAC H 0 1 N N N N N N 24.646 26.891 0.746 ? ? ? HAC ZNH 65 ZNH HBC1 HBC1 H 0 0 N N N N N N 24.423 28.909 2.078 ? ? ? HBC1 ZNH 66 ZNH HBC2 HBC2 H 0 0 N N N N N N 25.885 28.397 3.127 ? ? ? HBC2 ZNH 67 ZNH HMD1 HMD1 H 0 0 N N N N N N 27.664 27.351 -4.526 ? ? ? HMD1 ZNH 68 ZNH HMD2 HMD2 H 0 0 N N N N N N 26.299 26.815 -3.489 ? ? ? HMD2 ZNH 69 ZNH HMD3 HMD3 H 0 0 N N N N N N 27.468 28.033 -2.876 ? ? ? HMD3 ZNH 70 ZNH HAD1 HAD1 H 0 0 N N N N N N 30.229 24.705 -5.361 ? ? ? HAD1 ZNH 71 ZNH HAD2 HAD2 H 0 0 N N N N N N 29.066 26.058 -5.576 ? ? ? HAD2 ZNH 72 ZNH HBD1 HBD1 H 0 0 N N N N N N 30.581 27.453 -4.074 ? ? ? HBD1 ZNH 73 ZNH HBD2 HBD2 H 0 0 N N N N N N 31.784 26.124 -4.178 ? ? ? HBD2 ZNH 74 ZNH H2D H2D H 0 1 N N N N N N 32.645 28.414 -6.743 ? ? ? H2D ZNH 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZNH ZN NA SING N N 1 ZNH ZN NB SING N N 2 ZNH ZN NC SING N N 3 ZNH ZN ND SING N N 4 ZNH CHA C1A DOUB N N 5 ZNH CHA C4D SING N N 6 ZNH CHA HHA SING N N 7 ZNH CHB C4A DOUB N N 8 ZNH CHB C1B SING N N 9 ZNH CHB HHB SING N N 10 ZNH CHC C4B DOUB N N 11 ZNH CHC C1C SING N N 12 ZNH CHC HHC SING N N 13 ZNH CHD C4C SING N N 14 ZNH CHD C1D DOUB N N 15 ZNH CHD HHD SING N N 16 ZNH NA C1A SING N N 17 ZNH NA C4A SING N N 18 ZNH C1A C2A SING N N 19 ZNH C2A C3A DOUB N N 20 ZNH C2A CAA SING N N 21 ZNH C3A C4A SING N N 22 ZNH C3A CMA SING N N 23 ZNH CMA HMA1 SING N N 24 ZNH CMA HMA2 SING N N 25 ZNH CMA HMA3 SING N N 26 ZNH CAA CBA SING N N 27 ZNH CAA HAA1 SING N N 28 ZNH CAA HAA2 SING N N 29 ZNH CBA CGA SING N N 30 ZNH CBA HBA1 SING N N 31 ZNH CBA HBA2 SING N N 32 ZNH CGA O1A DOUB N N 33 ZNH CGA O2A SING N N 34 ZNH O2A H2A SING N N 35 ZNH NB C1B DOUB N N 36 ZNH NB C4B SING N N 37 ZNH C1B C2B SING N N 38 ZNH C2B C3B DOUB N N 39 ZNH C2B CMB SING N N 40 ZNH C3B C4B SING N N 41 ZNH C3B CAB SING N N 42 ZNH CMB HMB1 SING N N 43 ZNH CMB HMB2 SING N N 44 ZNH CMB HMB3 SING N N 45 ZNH CAB CBB DOUB N N 46 ZNH CAB HAB SING N N 47 ZNH CBB HBB1 SING N N 48 ZNH CBB HBB2 SING N N 49 ZNH NC C1C SING Y N 50 ZNH NC C4C SING Y N 51 ZNH C1C C2C DOUB Y N 52 ZNH C2C C3C SING Y N 53 ZNH C2C CMC SING N N 54 ZNH C3C C4C DOUB Y N 55 ZNH C3C CAC SING N N 56 ZNH CMC HMC1 SING N N 57 ZNH CMC HMC2 SING N N 58 ZNH CMC HMC3 SING N N 59 ZNH CAC CBC DOUB N N 60 ZNH CAC HAC SING N N 61 ZNH CBC HBC1 SING N N 62 ZNH CBC HBC2 SING N N 63 ZNH ND C1D SING N N 64 ZNH ND C4D DOUB N N 65 ZNH C1D C2D SING N N 66 ZNH C2D C3D DOUB N N 67 ZNH C2D CMD SING N N 68 ZNH C3D C4D SING N N 69 ZNH C3D CAD SING N N 70 ZNH CMD HMD1 SING N N 71 ZNH CMD HMD2 SING N N 72 ZNH CMD HMD3 SING N N 73 ZNH CAD CBD SING N N 74 ZNH CAD HAD1 SING N N 75 ZNH CAD HAD2 SING N N 76 ZNH CBD CGD SING N N 77 ZNH CBD HBD1 SING N N 78 ZNH CBD HBD2 SING N N 79 ZNH CGD O1D DOUB N N 80 ZNH CGD O2D SING N N 81 ZNH O2D H2D SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZNH InChI InChI 1.06 "InChI=1S/C34H34N4O4.Zn/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;" ZNH InChIKey InChI 1.06 FUTVBRXUIKZACV-RGGAHWMASA-L ZNH SMILES_CANONICAL CACTVS 3.385 "CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Zn][N@@]5C(=CC6=NC(=Cc4c(C)c3C=C)C(=C6C)C=C)C(=C(CCC(O)=O)C5=C2)C" ZNH SMILES CACTVS 3.385 "CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Zn][N]5C(=CC6=NC(=Cc4c(C)c3C=C)C(=C6C)C=C)C(=C(CCC(O)=O)C5=C2)C" ZNH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C=C)C=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C=C)C)CCC(=O)O)C" ZNH SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C=C)C=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C=C)C)CCC(=O)O)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZNH "Create component" 2001-03-01 RCSB ZNH "Modify descriptor" 2023-09-23 RCSB ZNH "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ZNH CYS None Heme/heme-like "Amino-acid side chain" "Any position" CAB SG ? ? 2 ZNH CYS None Heme/heme-like "Amino-acid side chain" "Any position" CAC SG ? ? #