data_ZNL # _chem_comp.id ZNL _chem_comp.name "N-{7-methyl-1-[(3S)-1-(prop-2-enoyl)azepan-3-yl]-1H-benzimidazol-2-yl}-5-(prop-2-enamido)thiophene-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-28 _chem_comp.pdbx_modified_date 2023-10-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZNL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EME _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZNL C16 C1 C 0 1 Y N N -10.468 -24.151 12.652 1.124 -1.469 -0.097 C16 ZNL 1 ZNL C12 C2 C 0 1 N N N -10.654 -23.518 5.679 4.252 2.149 1.770 C12 ZNL 2 ZNL C11 C3 C 0 1 N N N -11.342 -23.304 6.975 3.476 3.145 1.015 C11 ZNL 3 ZNL C15 C4 C 0 1 N N N -12.202 -24.097 9.145 1.913 1.404 0.468 C15 ZNL 4 ZNL C13 C5 C 0 1 N N N -9.408 -23.093 5.455 5.392 2.500 2.358 C13 ZNL 5 ZNL C01 C6 C 0 1 N N N -14.266 -22.118 10.581 5.435 -0.641 -0.607 C01 ZNL 6 ZNL C02 C7 C 0 1 Y N N -13.470 -21.955 11.819 4.679 -1.907 -0.294 C02 ZNL 7 ZNL C03 C8 C 0 1 Y N N -12.304 -22.767 12.202 3.297 -1.884 -0.189 C03 ZNL 8 ZNL C05 C9 C 0 1 N N S -11.583 -24.739 10.412 2.590 0.523 -0.611 C05 ZNL 9 ZNL C06 C10 C 0 1 N N N -12.119 -26.156 10.683 2.050 0.840 -1.942 C06 ZNL 10 ZNL C07 C11 C 0 1 N N N -11.754 -27.109 9.544 2.314 2.270 -2.403 C07 ZNL 11 ZNL C08 C12 C 0 1 N N N -10.567 -26.624 8.718 1.240 3.178 -1.855 C08 ZNL 12 ZNL C09 C13 C 0 1 N N N -10.994 -25.727 7.539 1.684 3.766 -0.503 C09 ZNL 13 ZNL C18 C14 C 0 1 N N N -8.403 -25.678 13.285 -1.234 -1.483 0.083 C18 ZNL 14 ZNL C19 C15 C 0 1 Y N N -7.466 -26.850 12.933 -2.525 -0.778 0.041 C19 ZNL 15 ZNL C20 C16 C 0 1 Y N N -7.599 -27.591 11.791 -2.645 0.551 -0.220 C20 ZNL 16 ZNL C22 C17 C 0 1 Y N N -5.656 -28.493 13.061 -4.832 -0.592 0.178 C22 ZNL 17 ZNL C24 C18 C 0 1 N N N -3.300 -28.837 14.040 -7.140 -0.031 0.241 C24 ZNL 18 ZNL C25 C19 C 0 1 N N N -3.011 -27.378 14.286 -8.547 -0.416 0.423 C25 ZNL 19 ZNL C26 C20 C 0 1 N N N -2.219 -26.635 13.505 -9.507 0.498 0.314 C26 ZNL 20 ZNL C28 C21 C 0 1 Y N N -6.301 -27.407 13.683 -3.796 -1.429 0.266 C28 ZNL 21 ZNL C31 C22 C 0 1 Y N N -11.673 -22.449 13.449 2.595 -3.066 0.102 C31 ZNL 22 ZNL C32 C23 C 0 1 Y N N -12.138 -21.403 14.290 3.301 -4.257 0.283 C32 ZNL 23 ZNL C33 C24 C 0 1 Y N N -13.233 -20.667 13.893 4.674 -4.262 0.174 C33 ZNL 24 ZNL C34 C25 C 0 1 Y N N -13.873 -20.946 12.685 5.361 -3.093 -0.112 C34 ZNL 25 ZNL N04 N1 N 0 1 Y N N -11.496 -23.897 11.690 2.341 -0.889 -0.310 N04 ZNL 26 ZNL N10 N2 N 0 1 N N N -11.511 -24.361 7.889 2.373 2.768 0.338 N10 ZNL 27 ZNL N17 N3 N 0 1 N N N -9.499 -25.228 12.439 -0.090 -0.807 -0.137 N17 ZNL 28 ZNL N23 N4 N 0 1 N N N -4.538 -29.280 13.466 -6.168 -0.957 0.351 N23 ZNL 29 ZNL N30 N5 N 0 1 Y N N -10.567 -23.312 13.691 1.275 -2.747 0.144 N30 ZNL 30 ZNL O14 O1 O 0 1 N N N -11.772 -22.194 7.266 3.831 4.308 1.001 O14 ZNL 31 ZNL O27 O2 O 0 1 N N N -2.436 -29.651 14.342 -6.854 1.124 -0.010 O27 ZNL 32 ZNL O29 O3 O 0 1 N N N -8.234 -25.078 14.329 -1.200 -2.676 0.318 O29 ZNL 33 ZNL S21 S1 S 0 1 Y N N -6.473 -28.835 11.588 -4.279 1.033 -0.190 S21 ZNL 34 ZNL H1 H1 H 0 1 N N N -11.179 -24.035 4.889 3.895 1.132 1.848 H1 ZNL 35 ZNL H2 H2 H 0 1 N N N -12.221 -23.008 9.295 0.831 1.372 0.336 H2 ZNL 36 ZNL H3 H3 H 0 1 N N N -13.232 -24.472 9.047 2.169 1.027 1.458 H3 ZNL 37 ZNL H4 H4 H 0 1 N N N -8.942 -23.269 4.497 5.961 1.768 2.912 H4 ZNL 38 ZNL H5 H5 H 0 1 N N N -8.867 -22.574 6.232 5.749 3.516 2.280 H5 ZNL 39 ZNL H6 H6 H 0 1 N N N -15.088 -22.826 10.763 5.582 -0.071 0.310 H6 ZNL 40 ZNL H7 H7 H 0 1 N N N -14.681 -21.144 10.281 6.403 -0.893 -1.038 H7 ZNL 41 ZNL H8 H8 H 0 1 N N N -13.620 -22.504 9.778 4.864 -0.044 -1.319 H8 ZNL 42 ZNL H9 H9 H 0 1 N N N -10.532 -24.905 10.133 3.665 0.707 -0.604 H9 ZNL 43 ZNL H10 H10 H 0 1 N N N -13.214 -26.114 10.779 2.493 0.156 -2.667 H10 ZNL 44 ZNL H11 H11 H 0 1 N N N -11.683 -26.532 11.620 0.973 0.676 -1.926 H11 ZNL 45 ZNL H12 H12 H 0 1 N N N -12.625 -27.211 8.880 3.287 2.596 -2.038 H12 ZNL 46 ZNL H13 H13 H 0 1 N N N -11.504 -28.090 9.974 2.302 2.309 -3.492 H13 ZNL 47 ZNL H14 H14 H 0 1 N N N -10.033 -27.500 8.320 1.058 3.989 -2.560 H14 ZNL 48 ZNL H15 H15 H 0 1 N N N -9.894 -26.050 9.372 0.322 2.608 -1.714 H15 ZNL 49 ZNL H16 H16 H 0 1 N N N -11.788 -26.254 6.989 2.360 4.602 -0.686 H16 ZNL 50 ZNL H17 H17 H 0 1 N N N -10.119 -25.596 6.885 0.806 4.133 0.028 H17 ZNL 51 ZNL H18 H18 H 0 1 N N N -8.374 -27.394 11.065 -1.815 1.213 -0.419 H18 ZNL 52 ZNL H19 H19 H 0 1 N N N -3.470 -26.906 15.142 -8.802 -1.442 0.646 H19 ZNL 53 ZNL H20 H20 H 0 1 N N N -2.054 -25.594 13.738 -10.541 0.215 0.449 H20 ZNL 54 ZNL H21 H21 H 0 1 N N N -1.745 -27.077 12.641 -9.253 1.524 0.092 H21 ZNL 55 ZNL H22 H22 H 0 1 N N N -5.977 -27.006 14.632 -3.896 -2.483 0.482 H22 ZNL 56 ZNL H23 H23 H 0 1 N N N -11.642 -21.188 15.225 2.772 -5.172 0.507 H23 ZNL 57 ZNL H24 H24 H 0 1 N N N -13.599 -19.868 14.521 5.219 -5.184 0.314 H24 ZNL 58 ZNL H25 H25 H 0 1 N N N -14.727 -20.346 12.408 6.438 -3.110 -0.195 H25 ZNL 59 ZNL H26 H26 H 0 1 N N N -9.607 -25.731 11.582 -0.117 0.145 -0.324 H26 ZNL 60 ZNL H27 H27 H 0 1 N N N -4.628 -30.267 13.333 -6.396 -1.879 0.551 H27 ZNL 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZNL C13 C12 DOUB N N 1 ZNL C12 C11 SING N N 2 ZNL C11 O14 DOUB N N 3 ZNL C11 N10 SING N N 4 ZNL C09 N10 SING N N 5 ZNL C09 C08 SING N N 6 ZNL N10 C15 SING N N 7 ZNL C08 C07 SING N N 8 ZNL C15 C05 SING N N 9 ZNL C07 C06 SING N N 10 ZNL C05 C06 SING N N 11 ZNL C05 N04 SING N N 12 ZNL C01 C02 SING N N 13 ZNL S21 C20 SING Y N 14 ZNL S21 C22 SING Y N 15 ZNL N04 C03 SING Y N 16 ZNL N04 C16 SING Y N 17 ZNL C20 C19 DOUB Y N 18 ZNL C02 C03 DOUB Y N 19 ZNL C02 C34 SING Y N 20 ZNL C03 C31 SING Y N 21 ZNL N17 C16 SING N N 22 ZNL N17 C18 SING N N 23 ZNL C16 N30 DOUB Y N 24 ZNL C34 C33 DOUB Y N 25 ZNL C19 C18 SING N N 26 ZNL C19 C28 SING Y N 27 ZNL C22 N23 SING N N 28 ZNL C22 C28 DOUB Y N 29 ZNL C18 O29 DOUB N N 30 ZNL C31 N30 SING Y N 31 ZNL C31 C32 DOUB Y N 32 ZNL N23 C24 SING N N 33 ZNL C26 C25 DOUB N N 34 ZNL C33 C32 SING Y N 35 ZNL C24 C25 SING N N 36 ZNL C24 O27 DOUB N N 37 ZNL C12 H1 SING N N 38 ZNL C15 H2 SING N N 39 ZNL C15 H3 SING N N 40 ZNL C13 H4 SING N N 41 ZNL C13 H5 SING N N 42 ZNL C01 H6 SING N N 43 ZNL C01 H7 SING N N 44 ZNL C01 H8 SING N N 45 ZNL C05 H9 SING N N 46 ZNL C06 H10 SING N N 47 ZNL C06 H11 SING N N 48 ZNL C07 H12 SING N N 49 ZNL C07 H13 SING N N 50 ZNL C08 H14 SING N N 51 ZNL C08 H15 SING N N 52 ZNL C09 H16 SING N N 53 ZNL C09 H17 SING N N 54 ZNL C20 H18 SING N N 55 ZNL C25 H19 SING N N 56 ZNL C26 H20 SING N N 57 ZNL C26 H21 SING N N 58 ZNL C28 H22 SING N N 59 ZNL C32 H23 SING N N 60 ZNL C33 H24 SING N N 61 ZNL C34 H25 SING N N 62 ZNL N17 H26 SING N N 63 ZNL N23 H27 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZNL SMILES ACDLabs 12.01 "O=C(Nc1nc2cccc(C)c2n1C1CCCCN(C1)C(=O)C=C)c1cc(NC(=O)C=C)sc1" ZNL InChI InChI 1.06 "InChI=1S/C25H27N5O3S/c1-4-20(31)27-21-13-17(15-34-21)24(33)28-25-26-19-11-8-9-16(3)23(19)30(25)18-10-6-7-12-29(14-18)22(32)5-2/h4-5,8-9,11,13,15,18H,1-2,6-7,10,12,14H2,3H3,(H,27,31)(H,26,28,33)/t18-/m0/s1" ZNL InChIKey InChI 1.06 DZTGCJZKRUDIGP-SFHVURJKSA-N ZNL SMILES_CANONICAL CACTVS 3.385 "Cc1cccc2nc(NC(=O)c3csc(NC(=O)C=C)c3)n([C@H]4CCCCN(C4)C(=O)C=C)c12" ZNL SMILES CACTVS 3.385 "Cc1cccc2nc(NC(=O)c3csc(NC(=O)C=C)c3)n([CH]4CCCCN(C4)C(=O)C=C)c12" ZNL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1n(c(n2)NC(=O)c3cc(sc3)NC(=O)C=C)[C@H]4CCCCN(C4)C(=O)C=C" ZNL SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1n(c(n2)NC(=O)c3cc(sc3)NC(=O)C=C)C4CCCCN(C4)C(=O)C=C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZNL "SYSTEMATIC NAME" ACDLabs 12.01 "N-{7-methyl-1-[(3S)-1-(prop-2-enoyl)azepan-3-yl]-1H-benzimidazol-2-yl}-5-(prop-2-enamido)thiophene-3-carboxamide" ZNL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[7-methyl-1-[(3~{S})-1-prop-2-enoylazepan-3-yl]benzimidazol-2-yl]-5-(prop-2-enoylamino)thiophene-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZNL "Create component" 2022-09-28 RCSB ZNL "Initial release" 2023-10-18 RCSB #