data_ZO4 # _chem_comp.id ZO4 _chem_comp.name "N-{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenyl}-beta-D-ribopyranosylamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 Cl N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-14 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.965 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZO4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MTX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZO4 C1 C1 C 0 1 Y N N -14.012 24.227 -12.944 5.025 -0.108 -0.338 C1 ZO4 1 ZO4 C10 C2 C 0 1 N N N -13.572 25.914 -10.257 1.503 1.007 -0.164 C10 ZO4 2 ZO4 C11 C3 C 0 1 N N N -12.935 25.218 -12.607 3.916 0.810 0.110 C11 ZO4 3 ZO4 C12 C4 C 0 1 N N N -13.249 26.558 -13.268 3.860 0.832 1.639 C12 ZO4 4 ZO4 C13 C5 C 0 1 N N N -11.641 24.686 -13.210 4.182 2.223 -0.411 C13 ZO4 5 ZO4 C17 C6 C 0 1 Y N N -13.672 26.289 -7.833 -0.834 1.325 -0.479 C17 ZO4 6 ZO4 C18 C7 C 0 1 Y N N -12.967 25.994 -6.673 -0.760 2.713 -0.475 C18 ZO4 7 ZO4 C19 C8 C 0 1 Y N N -13.417 26.434 -5.439 -1.907 3.466 -0.311 C19 ZO4 8 ZO4 C2 C9 C 0 1 Y N N -14.774 24.381 -14.097 4.875 -0.860 -1.490 C2 ZO4 9 ZO4 C20 C10 C 0 1 Y N N -14.585 27.179 -5.364 -3.130 2.843 -0.152 C20 ZO4 10 ZO4 C21 C11 C 0 1 Y N N -15.310 27.492 -6.497 -3.210 1.455 -0.155 C21 ZO4 11 ZO4 C22 C12 C 0 1 Y N N -14.848 27.038 -7.740 -2.060 0.696 -0.319 C22 ZO4 12 ZO4 C24 C13 C 0 1 N N R -17.534 28.823 -7.003 -4.530 -0.638 0.002 C24 ZO4 13 ZO4 C25 C14 C 0 1 N N R -17.216 29.016 -8.486 -5.618 -1.090 0.979 C25 ZO4 14 ZO4 C26 C15 C 0 1 N N R -18.398 28.565 -9.338 -5.740 -2.616 0.924 C26 ZO4 15 ZO4 C27 C16 C 0 1 N N R -19.715 29.088 -8.772 -6.039 -3.042 -0.516 C27 ZO4 16 ZO4 C29 C17 C 0 1 N N N -19.878 28.680 -7.311 -4.934 -2.515 -1.436 C29 ZO4 17 ZO4 C3 C18 C 0 1 Y N N -15.762 23.451 -14.406 5.887 -1.704 -1.908 C3 ZO4 18 ZO4 C4 C19 C 0 1 Y N N -15.983 22.363 -13.568 7.054 -1.802 -1.178 C4 ZO4 19 ZO4 C5 C20 C 0 1 Y N N -15.214 22.206 -12.421 7.211 -1.047 -0.016 C5 ZO4 20 ZO4 C6 C21 C 0 1 Y N N -14.227 23.135 -12.113 6.188 -0.192 0.398 C6 ZO4 21 ZO4 C7 C22 C 0 1 N N N -15.445 21.036 -11.510 8.459 -1.147 0.771 C7 ZO4 22 ZO4 C8 C23 C 0 1 N N N -14.659 20.848 -10.467 8.821 -2.444 1.447 C8 ZO4 23 ZO4 C9 C24 C 0 1 N N N -16.433 20.195 -11.750 9.258 -0.095 0.883 C9 ZO4 24 ZO4 N1 N1 N 0 1 N N N -16.432 28.233 -6.227 -4.447 0.825 0.006 N1 ZO4 25 ZO4 N3 N2 N 0 1 N N N -12.781 25.308 -11.152 2.638 0.327 -0.419 N3 ZO4 26 ZO4 N4 N3 N 0 1 N N N -13.139 25.806 -8.994 0.328 0.563 -0.651 N4 ZO4 27 ZO4 O2 O1 O 0 1 N N N -14.589 26.512 -10.573 1.540 2.022 0.505 O2 ZO4 28 ZO4 O3 O2 O 0 1 N N N -18.701 28.005 -6.865 -4.853 -1.093 -1.314 O3 ZO4 29 ZO4 O4 O3 O 0 1 N N N -16.922 30.394 -8.742 -5.269 -0.684 2.304 O4 ZO4 30 ZO4 O5 O4 O 0 1 N N N -18.229 29.036 -10.679 -4.513 -3.209 1.354 O5 ZO4 31 ZO4 O6 O5 O 0 1 N N N -19.757 30.515 -8.881 -6.083 -4.469 -0.593 O6 ZO4 32 ZO4 CL CL1 CL 0 0 N N N -15.193 27.763 -3.778 -4.568 3.794 0.054 CL ZO4 33 ZO4 H1 H1 H 0 1 N N N -14.181 26.965 -12.849 4.811 1.191 2.033 H1 ZO4 34 ZO4 H2 H2 H 0 1 N N N -12.425 27.262 -13.079 3.058 1.496 1.964 H2 ZO4 35 ZO4 H3 H3 H 0 1 N N N -13.367 26.413 -14.352 3.670 -0.175 2.010 H3 ZO4 36 ZO4 H4 H4 H 0 1 N N N -11.392 23.719 -12.749 4.223 2.208 -1.500 H4 ZO4 37 ZO4 H5 H5 H 0 1 N N N -11.769 24.553 -14.294 3.381 2.887 -0.086 H5 ZO4 38 ZO4 H6 H6 H 0 1 N N N -10.827 25.402 -13.022 5.133 2.583 -0.017 H6 ZO4 39 ZO4 H7 H7 H 0 1 N N N -12.057 25.415 -6.734 0.194 3.203 -0.599 H7 ZO4 40 ZO4 H8 H8 H 0 1 N N N -12.863 26.199 -4.542 -1.847 4.545 -0.308 H8 ZO4 41 ZO4 H9 H9 H 0 1 N N N -14.599 25.222 -14.752 3.963 -0.787 -2.064 H9 ZO4 42 ZO4 H10 H10 H 0 1 N N N -15.407 27.269 -8.635 -2.119 -0.382 -0.323 H10 ZO4 43 ZO4 H11 H11 H 0 1 N N N -17.752 29.816 -6.583 -3.571 -1.057 0.306 H11 ZO4 44 ZO4 H12 H12 H 0 1 N N N -16.344 28.395 -8.740 -6.570 -0.638 0.698 H12 ZO4 45 ZO4 H13 H13 H 0 1 N N N -18.430 27.465 -9.333 -6.552 -2.940 1.576 H13 ZO4 46 ZO4 H14 H14 H 0 1 N N N -20.541 28.648 -9.350 -6.999 -2.630 -0.827 H14 ZO4 47 ZO4 H15 H15 H 0 1 N N N -20.039 29.578 -6.697 -3.980 -2.959 -1.150 H15 ZO4 48 ZO4 H16 H16 H 0 1 N N N -20.744 28.008 -7.213 -5.163 -2.779 -2.468 H16 ZO4 49 ZO4 H17 H17 H 0 1 N N N -16.358 23.574 -15.298 5.764 -2.289 -2.808 H17 ZO4 50 ZO4 H18 H18 H 0 1 N N N -16.750 21.642 -13.808 7.843 -2.463 -1.505 H18 ZO4 51 ZO4 H19 H19 H 0 1 N N N -13.626 23.007 -11.225 6.306 0.399 1.294 H19 ZO4 52 ZO4 H20 H20 H 0 1 N N N -14.980 19.948 -9.923 9.417 -3.053 0.767 H20 ZO4 53 ZO4 H21 H21 H 0 1 N N N -13.621 20.719 -10.809 9.398 -2.235 2.348 H21 ZO4 54 ZO4 H22 H22 H 0 1 N N N -14.720 21.721 -9.800 7.911 -2.981 1.715 H22 ZO4 55 ZO4 H23 H23 H 0 1 N N N -16.598 19.354 -11.093 10.169 -0.168 1.458 H23 ZO4 56 ZO4 H24 H24 H 0 1 N N N -17.077 20.348 -12.603 8.998 0.835 0.398 H24 ZO4 57 ZO4 H25 H25 H 0 1 N N N -16.054 29.029 -5.753 -5.251 1.356 0.120 H25 ZO4 58 ZO4 H26 H26 H 0 1 N N N -11.973 24.854 -10.775 2.609 -0.483 -0.952 H26 ZO4 59 ZO4 H27 H27 H 0 1 N N N -12.290 25.289 -8.884 0.286 -0.285 -1.120 H27 ZO4 60 ZO4 H28 H28 H 0 1 N N N -16.185 30.666 -8.207 -5.171 0.272 2.409 H28 ZO4 61 ZO4 H29 H29 H 0 1 N N N -17.409 28.709 -11.029 -4.517 -4.176 1.339 H29 ZO4 62 ZO4 H30 H30 H 0 1 N N N -20.578 30.836 -8.528 -6.268 -4.810 -1.479 H30 ZO4 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZO4 C3 C2 DOUB Y N 1 ZO4 C3 C4 SING Y N 2 ZO4 C2 C1 SING Y N 3 ZO4 C4 C5 DOUB Y N 4 ZO4 C12 C11 SING N N 5 ZO4 C13 C11 SING N N 6 ZO4 C1 C11 SING N N 7 ZO4 C1 C6 DOUB Y N 8 ZO4 C11 N3 SING N N 9 ZO4 C5 C6 SING Y N 10 ZO4 C5 C7 SING N N 11 ZO4 C9 C7 DOUB N N 12 ZO4 C7 C8 SING N N 13 ZO4 N3 C10 SING N N 14 ZO4 O5 C26 SING N N 15 ZO4 O2 C10 DOUB N N 16 ZO4 C10 N4 SING N N 17 ZO4 C26 C27 SING N N 18 ZO4 C26 C25 SING N N 19 ZO4 N4 C17 SING N N 20 ZO4 O6 C27 SING N N 21 ZO4 C27 C29 SING N N 22 ZO4 O4 C25 SING N N 23 ZO4 C25 C24 SING N N 24 ZO4 C17 C22 DOUB Y N 25 ZO4 C17 C18 SING Y N 26 ZO4 C22 C21 SING Y N 27 ZO4 C29 O3 SING N N 28 ZO4 C24 O3 SING N N 29 ZO4 C24 N1 SING N N 30 ZO4 C18 C19 DOUB Y N 31 ZO4 C21 N1 SING N N 32 ZO4 C21 C20 DOUB Y N 33 ZO4 C19 C20 SING Y N 34 ZO4 C20 CL SING N N 35 ZO4 C12 H1 SING N N 36 ZO4 C12 H2 SING N N 37 ZO4 C12 H3 SING N N 38 ZO4 C13 H4 SING N N 39 ZO4 C13 H5 SING N N 40 ZO4 C13 H6 SING N N 41 ZO4 C18 H7 SING N N 42 ZO4 C19 H8 SING N N 43 ZO4 C2 H9 SING N N 44 ZO4 C22 H10 SING N N 45 ZO4 C24 H11 SING N N 46 ZO4 C25 H12 SING N N 47 ZO4 C26 H13 SING N N 48 ZO4 C27 H14 SING N N 49 ZO4 C29 H15 SING N N 50 ZO4 C29 H16 SING N N 51 ZO4 C3 H17 SING N N 52 ZO4 C4 H18 SING N N 53 ZO4 C6 H19 SING N N 54 ZO4 C8 H20 SING N N 55 ZO4 C8 H21 SING N N 56 ZO4 C8 H22 SING N N 57 ZO4 C9 H23 SING N N 58 ZO4 C9 H24 SING N N 59 ZO4 N1 H25 SING N N 60 ZO4 N3 H26 SING N N 61 ZO4 N4 H27 SING N N 62 ZO4 O4 H28 SING N N 63 ZO4 O5 H29 SING N N 64 ZO4 O6 H30 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZO4 SMILES ACDLabs 12.01 "C=C(C)c1cccc(c1)C(C)(C)NC(=O)Nc1cc(NC2OCC(O)C(O)C2O)c(Cl)cc1" ZO4 InChI InChI 1.03 "InChI=1S/C24H30ClN3O5/c1-13(2)14-6-5-7-15(10-14)24(3,4)28-23(32)26-16-8-9-17(25)18(11-16)27-22-21(31)20(30)19(29)12-33-22/h5-11,19-22,27,29-31H,1,12H2,2-4H3,(H2,26,28,32)/t19-,20-,21-,22-/m1/s1" ZO4 InChIKey InChI 1.03 AFRUCARRYXUVSH-GXRSIYKFSA-N ZO4 SMILES_CANONICAL CACTVS 3.385 "CC(=C)c1cccc(c1)C(C)(C)NC(=O)Nc2ccc(Cl)c(N[C@@H]3OC[C@@H](O)[C@@H](O)[C@H]3O)c2" ZO4 SMILES CACTVS 3.385 "CC(=C)c1cccc(c1)C(C)(C)NC(=O)Nc2ccc(Cl)c(N[CH]3OC[CH](O)[CH](O)[CH]3O)c2" ZO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=C)c1cccc(c1)C(C)(C)NC(=O)Nc2ccc(c(c2)N[C@H]3[C@@H]([C@@H]([C@@H](CO3)O)O)O)Cl" ZO4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=C)c1cccc(c1)C(C)(C)NC(=O)Nc2ccc(c(c2)NC3C(C(C(CO3)O)O)O)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZO4 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenyl}-beta-D-ribopyranosylamine" ZO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-chloranyl-3-[[(2~{R},3~{R},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxan-2-yl]amino]phenyl]-3-[2-(3-prop-1-en-2-ylphenyl)propan-2-yl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZO4 "Create component" 2021-05-14 RCSB ZO4 "Initial release" 2021-06-09 RCSB ##