data_ZOY # _chem_comp.id ZOY _chem_comp.name "N-[(4S)-4,5-diamino-5-oxopentyl]-10-phenyldecanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H35 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZOY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7MX1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZOY N N1 N 0 1 N N N N N N 115.130 -3.320 12.478 -9.422 1.558 0.555 N ZOY 1 ZOY C1 C1 C 0 1 N N S N N N 115.933 -2.264 11.870 -9.336 0.322 -0.233 C1 ZOY 2 ZOY C16 C2 C 0 1 N N N N N N 120.406 -6.905 11.233 -1.946 0.736 -0.404 C16 ZOY 3 ZOY C17 C3 C 0 1 N N N N N N 121.885 -6.916 11.615 -0.676 -0.026 -0.022 C17 ZOY 4 ZOY C18 C4 C 0 1 N N N N N N 122.830 -6.857 10.391 0.551 0.795 -0.421 C18 ZOY 5 ZOY C19 C5 C 0 1 N N N N N N 124.242 -7.357 10.700 1.822 0.032 -0.039 C19 ZOY 6 ZOY C2 C6 C 0 1 N N N N N N 116.489 -2.720 10.496 -8.066 -0.441 0.149 C2 ZOY 7 ZOY C20 C7 C 0 1 N N N N N N 125.137 -6.377 11.403 3.049 0.853 -0.439 C20 ZOY 8 ZOY C21 C8 C 0 1 N N N N N N 126.499 -6.972 11.647 4.319 0.091 -0.056 C21 ZOY 9 ZOY C22 C9 C 0 1 N N N N N N 127.621 -6.041 12.049 5.547 0.912 -0.456 C22 ZOY 10 ZOY C23 C10 C 0 1 N N N N N N 127.925 -6.022 13.513 6.817 0.150 -0.074 C23 ZOY 11 ZOY C24 C11 C 0 1 N N N N N N 129.184 -5.228 13.879 8.045 0.971 -0.474 C24 ZOY 12 ZOY C25 C12 C 0 1 Y N N N N N 130.478 -6.004 13.968 9.296 0.220 -0.097 C25 ZOY 13 ZOY C26 C13 C 0 1 Y N N N N N 131.389 -5.975 12.923 9.861 0.401 1.151 C26 ZOY 14 ZOY C27 C14 C 0 1 Y N N N N N 132.576 -6.678 12.998 11.009 -0.287 1.497 C27 ZOY 15 ZOY C28 C15 C 0 1 Y N N N N N 132.877 -7.418 14.110 11.591 -1.158 0.594 C28 ZOY 16 ZOY C29 C16 C 0 1 Y N N N N N 131.982 -7.458 15.163 11.024 -1.341 -0.654 C29 ZOY 17 ZOY C3 C17 C 0 1 N N N N N N 117.294 -4.008 10.635 -6.838 0.380 -0.251 C3 ZOY 18 ZOY C30 C18 C 0 1 Y N N N N N 130.793 -6.754 15.091 9.874 -0.655 -0.998 C30 ZOY 19 ZOY C4 C19 C 0 1 N N N N N N 118.264 -4.402 9.490 -5.568 -0.382 0.132 C4 ZOY 20 ZOY C5 C20 C 0 1 N N N N N N 119.947 -5.557 10.789 -3.155 -0.072 -0.010 C5 ZOY 21 ZOY C6 C21 C 0 1 N N N N N N 115.086 -1.004 11.671 -10.542 -0.538 0.048 C6 ZOY 22 ZOY N1 N2 N 0 1 N N N N N N 118.887 -5.612 9.984 -4.393 0.404 -0.251 N1 ZOY 23 ZOY N2 N3 N 0 1 N N N N N N 115.695 0.161 11.831 -10.899 -1.503 -0.823 N2 ZOY 24 ZOY O1 O1 O 0 1 N N N N N N 120.491 -4.506 11.120 -3.015 -1.152 0.524 O1 ZOY 25 ZOY O2 O2 O 0 1 N N N N N N 113.899 -1.122 11.373 -11.190 -0.361 1.057 O2 ZOY 26 ZOY H1 H1 H 0 1 N N N N N N 114.781 -3.007 13.361 -10.218 2.111 0.276 H1 ZOY 27 ZOY H8 H2 H 0 1 N N N N N N 114.363 -3.543 11.877 -9.451 1.355 1.543 H8 ZOY 28 ZOY H H4 H 0 1 N N N N N N 116.782 -2.019 12.526 -9.306 0.569 -1.294 H ZOY 29 ZOY H5 H5 H 0 1 N N N N N N 119.812 -7.211 12.107 -1.965 1.694 0.115 H5 ZOY 30 ZOY H3 H6 H 0 1 N N N N N N 120.247 -7.621 10.413 -1.958 0.906 -1.481 H3 ZOY 31 ZOY H30 H7 H 0 1 N N N N N N 122.095 -7.839 12.175 -0.665 -0.196 1.055 H30 ZOY 32 ZOY H31 H8 H 0 1 N N N N N N 122.087 -6.045 12.255 -0.657 -0.984 -0.541 H31 ZOY 33 ZOY H32 H9 H 0 1 N N N N N N 122.895 -5.814 10.049 0.540 0.965 -1.498 H32 ZOY 34 ZOY H33 H10 H 0 1 N N N N N N 122.405 -7.480 9.590 0.533 1.753 0.098 H33 ZOY 35 ZOY H34 H11 H 0 1 N N N N N N 124.153 -8.251 11.335 1.833 -0.137 1.038 H34 ZOY 36 ZOY H35 H12 H 0 1 N N N N N N 124.720 -7.630 9.748 1.840 -0.926 -0.558 H35 ZOY 37 ZOY H9 H13 H 0 1 N N N N N N 117.139 -1.931 10.091 -8.054 -0.610 1.226 H9 ZOY 38 ZOY H10 H14 H 0 1 N N N N N N 115.649 -2.893 9.807 -8.047 -1.399 -0.370 H10 ZOY 39 ZOY H36 H15 H 0 1 N N N N N N 125.244 -5.476 10.781 3.038 1.023 -1.516 H36 ZOY 40 ZOY H37 H16 H 0 1 N N N N N N 124.685 -6.105 12.368 3.030 1.812 0.080 H37 ZOY 41 ZOY H39 H17 H 0 1 N N N N N N 126.391 -7.718 12.448 4.331 -0.079 1.020 H39 ZOY 42 ZOY H38 H18 H 0 1 N N N N N N 126.808 -7.474 10.718 4.338 -0.867 -0.576 H38 ZOY 43 ZOY H40 H19 H 0 1 N N N N N N 128.531 -6.351 11.514 5.535 1.082 -1.533 H40 ZOY 44 ZOY H41 H20 H 0 1 N N N N N N 127.346 -5.021 11.743 5.528 1.870 0.063 H41 ZOY 45 ZOY H42 H21 H 0 1 N N N N N N 127.069 -5.574 14.038 6.828 -0.020 1.003 H42 ZOY 46 ZOY H43 H22 H 0 1 N N N N N N 128.060 -7.060 13.852 6.836 -0.809 -0.593 H43 ZOY 47 ZOY H44 H23 H 0 1 N N N N N N 129.317 -4.446 13.117 8.033 1.140 -1.551 H44 ZOY 48 ZOY H45 H24 H 0 1 N N N N N N 129.009 -4.760 14.859 8.026 1.929 0.045 H45 ZOY 49 ZOY H46 H25 H 0 1 N N N N N N 131.168 -5.395 12.039 9.407 1.082 1.856 H46 ZOY 50 ZOY H47 H26 H 0 1 N N N N N N 133.272 -6.644 12.173 11.451 -0.145 2.471 H47 ZOY 51 ZOY H48 H27 H 0 1 N N N N N N 133.806 -7.966 14.164 12.488 -1.696 0.864 H48 ZOY 52 ZOY H49 H28 H 0 1 N N N N N N 132.211 -8.040 16.043 11.479 -2.021 -1.359 H49 ZOY 53 ZOY H12 H29 H 0 1 N N N N N N 116.573 -4.831 10.747 -6.850 0.550 -1.327 H12 ZOY 54 ZOY H11 H30 H 0 1 N N N N N N 117.894 -3.918 11.553 -6.857 1.339 0.268 H11 ZOY 55 ZOY H50 H31 H 0 1 N N N N N N 130.102 -6.789 15.920 9.430 -0.800 -1.971 H50 ZOY 56 ZOY H13 H32 H 0 1 N N N N N N 119.013 -3.615 9.319 -5.557 -0.552 1.208 H13 ZOY 57 ZOY H14 H33 H 0 1 N N N N N N 117.715 -4.594 8.557 -5.549 -1.340 -0.387 H14 ZOY 58 ZOY H15 H34 H 0 1 N N N N N N 118.516 -6.502 9.717 -4.505 1.268 -0.678 H15 ZOY 59 ZOY H17 H35 H 0 1 N N N N N N 115.185 1.013 11.709 -10.380 -1.644 -1.630 H17 ZOY 60 ZOY H16 H36 H 0 1 N N N N N N 116.665 0.189 12.074 -11.675 -2.056 -0.642 H16 ZOY 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZOY C4 N1 SING N N 1 ZOY C4 C3 SING N N 2 ZOY N1 C5 SING N N 3 ZOY C18 C19 SING N N 4 ZOY C18 C17 SING N N 5 ZOY C2 C3 SING N N 6 ZOY C2 C1 SING N N 7 ZOY C19 C20 SING N N 8 ZOY C5 O1 DOUB N N 9 ZOY C5 C16 SING N N 10 ZOY C16 C17 SING N N 11 ZOY O2 C6 DOUB N N 12 ZOY C20 C21 SING N N 13 ZOY C21 C22 SING N N 14 ZOY C6 N2 SING N N 15 ZOY C6 C1 SING N N 16 ZOY C1 N SING N N 17 ZOY C22 C23 SING N N 18 ZOY C26 C27 DOUB Y N 19 ZOY C26 C25 SING Y N 20 ZOY C27 C28 SING Y N 21 ZOY C23 C24 SING N N 22 ZOY C24 C25 SING N N 23 ZOY C25 C30 DOUB Y N 24 ZOY C28 C29 DOUB Y N 25 ZOY C30 C29 SING Y N 26 ZOY N H1 SING N N 27 ZOY N H8 SING N N 28 ZOY C1 H SING N N 29 ZOY C16 H5 SING N N 30 ZOY C16 H3 SING N N 31 ZOY C17 H30 SING N N 32 ZOY C17 H31 SING N N 33 ZOY C18 H32 SING N N 34 ZOY C18 H33 SING N N 35 ZOY C19 H34 SING N N 36 ZOY C19 H35 SING N N 37 ZOY C2 H9 SING N N 38 ZOY C2 H10 SING N N 39 ZOY C20 H36 SING N N 40 ZOY C20 H37 SING N N 41 ZOY C21 H39 SING N N 42 ZOY C21 H38 SING N N 43 ZOY C22 H40 SING N N 44 ZOY C22 H41 SING N N 45 ZOY C23 H42 SING N N 46 ZOY C23 H43 SING N N 47 ZOY C24 H44 SING N N 48 ZOY C24 H45 SING N N 49 ZOY C26 H46 SING N N 50 ZOY C27 H47 SING N N 51 ZOY C28 H48 SING N N 52 ZOY C29 H49 SING N N 53 ZOY C3 H12 SING N N 54 ZOY C3 H11 SING N N 55 ZOY C30 H50 SING N N 56 ZOY C4 H13 SING N N 57 ZOY C4 H14 SING N N 58 ZOY N1 H15 SING N N 59 ZOY N2 H17 SING N N 60 ZOY N2 H16 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZOY SMILES ACDLabs 12.01 "NC(=O)C(N)CCCNC(=O)CCCCCCCCCc1ccccc1" ZOY InChI InChI 1.03 "InChI=1S/C21H35N3O2/c22-19(21(23)26)15-11-17-24-20(25)16-10-5-3-1-2-4-7-12-18-13-8-6-9-14-18/h6,8-9,13-14,19H,1-5,7,10-12,15-17,22H2,(H2,23,26)(H,24,25)/t19-/m0/s1" ZOY InChIKey InChI 1.03 PXLGZFSIHCIIGA-IBGZPJMESA-N ZOY SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCNC(=O)CCCCCCCCCc1ccccc1)C(N)=O" ZOY SMILES CACTVS 3.385 "N[CH](CCCNC(=O)CCCCCCCCCc1ccccc1)C(N)=O" ZOY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCCCCCC(=O)NCCC[C@@H](C(=O)N)N" ZOY SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCCCCCCCCC(=O)NCCCC(C(=O)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZOY "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(4S)-4,5-diamino-5-oxopentyl]-10-phenyldecanamide" ZOY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(4~{S})-4,5-bis(azanyl)-5-oxidanylidene-pentyl]-10-phenyl-decanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZOY "Create component" 2021-05-18 RCSB ZOY "Initial release" 2022-03-30 RCSB ZOY "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ZOY TPO None Lipid/lipid-like "Amino-acid backbone" C-terminal N C ? ? 2 ZOY ALA None Lipid/lipid-like "Amino-acid side chain" "Any position" C16 CB ? ? #